-
1
-
-
80053453491
-
Separation of recombination and SOS response in Escherichia coli RecA suggests LexA interaction sites
-
Adikesavan, A.K. et al. (2011) Separation of recombination and SOS response in Escherichia coli RecA suggests LexA interaction sites. PLoS Genet., 7, e1002244.
-
(2011)
PLoS Genet.
, vol.7
-
-
Adikesavan, A.K.1
-
2
-
-
0035838976
-
Automated structure-based prediction of functional sites in proteins: Applications to assessing the validity of inheriting protein function from homology in genome annotation and to protein docking
-
DOI 10.1006/jmbi.2001.4870
-
Aloy, P. et al. (2001) Automated structure-based prediction of functional sites in proteins: applications to assessing the validity of inheriting protein function from homology in genome annotation and to protein docking. J. Mol. Biol., 311, 395-408. (Pubitemid 32744549)
-
(2001)
Journal of Molecular Biology
, vol.311
, Issue.2
, pp. 395-408
-
-
Aloy, P.1
Querol, E.2
Aviles, F.X.3
Sternberg, M.J.E.4
-
3
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
DOI 10.1093/nar/25.17.3389
-
Altschul, S. et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res., 25, 3389-3402. (Pubitemid 27359211)
-
(1997)
Nucleic Acids Research
, vol.25
, Issue.17
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
4
-
-
0033954256
-
The Protein data Bank
-
Berman, H. et al. (2000) The protein data bank. Nucleic Acids Res., 28, 235-242. (Pubitemid 30047768)
-
(2000)
Nucleic Acids Research
, vol.28
, Issue.1
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
5
-
-
84858126537
-
Automated protein structure modeling with swiss-model workspace and the protein model portal
-
In: Orry, A.J.W. and Abagyan, R. (eds) Humana Press
-
Bordoli, L. et al. (2012) Automated protein structure modeling with swiss-model workspace and the protein model portal. In: Orry, A.J.W. and Abagyan, R. (eds) Homology Modeling, volume 857 of Methods in Molecular Biology. pp. 107-136. Humana Press.
-
(2012)
Homology Modeling, Volume 857 of Methods in Molecular Biology
, pp. 107-136
-
-
Bordoli, L.1
-
6
-
-
84867781208
-
Epistasis as the primary factor in molecular evolution
-
Breen, M.S. et al. (2012) Epistasis as the primary factor in molecular evolution. Nature, 490, 535538.
-
(2012)
Nature
, vol.490
, pp. 535538
-
-
Breen, M.S.1
-
7
-
-
58149518390
-
The bacterial lexa transcriptional repressor
-
10.1007/s00018-008-8378-6
-
Butala, M. et al. (2009) The bacterial lexa transcriptional repressor. Cell. Mol. Life Sci., 66, 82-93. 10.1007/s00018-008-8378-6.
-
(2009)
Cell. Mol. Life Sci.
, vol.66
, pp. 82-93
-
-
Butala, M.1
-
8
-
-
78649655423
-
Networks of high mutual information define the structural proximity of catalytic sites: Implications for catalytic residue identification
-
Buslje, C.M. et al. (2010) Networks of high mutual information define the structural proximity of catalytic sites: implications for catalytic residue identification. PLoS Comput. Biol., 6, e1000978.
-
(2010)
PLoS Comput. Biol.
, vol.6
-
-
Buslje, C.M.1
-
9
-
-
34548133728
-
Predicting functionally important residues from sequence conservation
-
DOI 10.1093/bioinformatics/btm270
-
Capra, J.A. and Singh, M. (2007) Predicting functionally important residues from sequence conservation. Bioinformatics, 23, 1875-1882. (Pubitemid 47299827)
-
(2007)
Bioinformatics
, vol.23
, Issue.15
, pp. 1875-1882
-
-
Capra, J.A.1
Singh, M.2
-
10
-
-
0029587166
-
A method to predict functional residues in proteins
-
DOI 10.1038/nsb0295-171
-
Casari, G. et al. (1995) A method to predict functional residues in proteins. Nat. Struct. Biol., 2, 171-178. (Pubitemid 26040653)
-
(1995)
Nature Structural Biology
, vol.2
, Issue.2
, pp. 171-178
-
-
Casari, G.1
Sander, C.2
Valencia, A.3
-
11
-
-
42449111332
-
Reassessing a sparse energetic network within a single protein domain
-
DOI 10.1073/pnas.0711732105
-
Chi, C. et al. (2008) Reassessing a sparse energetic network within a single protein domain. Proc. Natl Acad. Sci. USA, 105, 4679-4684. (Pubitemid 351753806)
-
(2008)
Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, Issue.12
, pp. 4679-4684
-
-
Chi, C.N.1
Elfstrom, L.2
Shi, Y.3
Snall, T.4
Engstrom, A.5
Jemth, P.6
-
13
-
-
0028916599
-
A hot spot of binding energy in a hormone-receptor interface
-
Clackson, T. and Well, J.A. (1995) A hot spot of binding energy in a hormone-receptor interface. Science, 267, 383-386.
-
(1995)
Science
, vol.267
, pp. 383-386
-
-
Clackson, T.1
Well, J.A.2
-
14
-
-
77955344995
-
Surface residues dynamically organize water bridges to enhance electron transfer between proteins
-
de la Lande, A. et al. (2010) Surface residues dynamically organize water bridges to enhance electron transfer between proteins. Proc. Natl Acad. Sci. USA, 107, 11799-11804.
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, pp. 11799-11804
-
-
De La-Lande, A.1
-
15
-
-
59149089414
-
Joint evolutionary trees: A large-scale method to predict protein interfaces based on sequence sampling
-
Engelen, S. et al. (2009) Joint evolutionary trees: a large-scale method to predict protein interfaces based on sequence sampling. PLoS Comput. Biol., 5, e1000267.
-
(2009)
PLoS Comput. Biol.
, vol.5
-
-
Engelen, S.1
-
16
-
-
77649271360
-
Evolutionary trace annotation of protein function in the structural proteome
-
Erdin, S. et al. (2010) Evolutionary trace annotation of protein function in the structural proteome. J. Mol. Biol., 396, 1451-1473.
-
(2010)
J. Mol. Biol.
, vol.396
, pp. 1451-1473
-
-
Erdin, S.1
-
17
-
-
2542445427
-
ConSurf: Identification of functional regions in proteins by surface-mapping of phylogenetic information
-
DOI 10.1093/bioinformatics/19.1.163
-
Glaser, F. et al. (2003) ConSurf: identification of functional regions in proteins by surface-mapping of phylogenetic information. Bioinformatics, 19, 163-164. (Pubitemid 36150199)
-
(2003)
Bioinformatics
, vol.19
, Issue.1
, pp. 163-164
-
-
Glaser, F.1
Pupko, T.2
Paz, I.3
Bell, R.E.4
Bechor-Shental, D.5
Martz, E.6
Ben-Tal, N.7
-
18
-
-
0042674397
-
Using a neural network and spatial clustering to predict the location of active sites in enzymes
-
Gutteridge, A. et al. (2003) Using a neural network and spatial clustering to predict the location of active sites in enzymes. J. Mol. Biol., 330, 719-734.
-
(2003)
J. Mol. Biol.
, vol.330
, pp. 719-734
-
-
Gutteridge, A.1
-
19
-
-
68749107059
-
Protein sectors: Evolutionary units of three-dimensional structure
-
Halabi, N. et al. (2009) Protein sectors: evolutionary units of three-dimensional structure. Cell, 138, 774-786.
-
(2009)
Cell
, vol.138
, pp. 774-786
-
-
Halabi, N.1
-
20
-
-
9944263528
-
Searching for new allosteric sites in enzymes
-
DOI 10.1016/j.sbi.2004.10.009, PII S0959440X0400185X
-
Hardy, J.A. et al. (2004) Searching for new allosteric sites in enzymes. Curr. Opin. Struct. Biol., 14, 706-715. (Pubitemid 39592582)
-
(2004)
Current Opinion in Structural Biology
, vol.14
, Issue.6
, pp. 706-715
-
-
Hardy, J.A.1
Wells, J.A.2
-
21
-
-
0027092678
-
Selection of representative protein data sets
-
Hobohm, U. et al. (1992) Selection of representative protein data sets. Protein Sci., 1, 409-417. (Pubitemid 23007308)
-
(1992)
Protein Science
, vol.1
, Issue.3
, pp. 409-417
-
-
Hobohm, U.1
Scharf, M.2
Schneider, R.3
Sander, C.4
-
22
-
-
34547600100
-
SiteFiNDER-3D: A web-based tool for predicting the location of functional sites in proteins
-
Innis, C.A. (2007) siteFiNDER-3D: a web-based tool for predicting the location of functional sites in proteins. Nucleic Acids Res., 35, W489-W494.
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Innis, C.A.1
-
23
-
-
38849090164
-
Prediction of enzyme function based on 3D templates of evolutionarily important amino acids
-
Kristensen, D.M. et al. (2008) Prediction of enzyme function based on 3D templates of evolutionarily important amino acids. BCM Bioinformatics, 9, 17.
-
(2008)
BCM Bioinformatics
, vol.9
, pp. 17
-
-
Kristensen, D.M.1
-
24
-
-
13444254300
-
PDBsum more: New summaries and analyses of the known 3D structures of proteins and nucleic acids
-
DOI 10.1093/nar/gki001
-
Laskowski, R. et al. (2005) PDBsum more: new summaries and analyses of the known 3D structures of proteins and nucleic acids. Nucleic Acids Res., 33, D266-D268. (Pubitemid 40207875)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.DATABASE ISS.
-
-
Laskowski, R.A.1
Chistyakov, V.V.2
Thornton, J.M.3
-
25
-
-
38349144394
-
Understanding the molecular machinery of genetics through 3D structures
-
Laskowski, R.A. and Thornton, J.M. (2008) Understanding the molecular machinery of genetics through 3D structures. Nat. Rev. Genet., 9, 141-145.
-
(2008)
Nat. Rev. Genet.
, vol.9
, pp. 141-145
-
-
Laskowski, R.A.1
Thornton, J.M.2
-
26
-
-
77955570809
-
Evolution: A guide to perturb protein function and networks
-
Lichtarge, O. and Wilkins, A. (2010) Evolution: a guide to perturb protein function and networks. Curr. Opin. Struct. Biol., 20, 351-359.
-
(2010)
Curr. Opin. Struct. Biol.
, vol.20
, pp. 351-359
-
-
Lichtarge, O.1
Wilkins, A.2
-
27
-
-
0029913807
-
An evolutionary trace method defines binding surfaces common to protein families
-
DOI 10.1006/jmbi.1996.0167
-
Lichtarge, O. et al. (1996) An evolutionary trace method defines binding surfaces common to protein families. J. Mol. Biol., 257, 342-358. (Pubitemid 26114038)
-
(1996)
Journal of Molecular Biology
, vol.257
, Issue.2
, pp. 342-358
-
-
Lichtarge, O.1
Bourne, H.R.2
Cohen, F.E.3
-
28
-
-
0024832465
-
- mutant LexA proteins
-
DOI 10.1016/0022-2836(89)90121-6
-
Lin, L.L. and Little, J.W. (1989) Autodigestion and RecA-dependent cleavage of Ind mutant LexA proteins. J. Mol. Biol., 210, 439-452. (Pubitemid 20030382)
-
(1989)
Journal of Molecular Biology
, vol.210
, Issue.3
, pp. 439-452
-
-
Lin, L.-L.1
Little, J.W.2
-
29
-
-
0036300444
-
Structural clusters of evolutionary trace residues are statistically significant and common in proteins
-
DOI 10.1006/jmbi.2001.5327
-
Madabushi, S. et al. (2002) Structural clusters of evolutionary trace residues are statistically significant and common in proteins. J. Mol. Biol., 316, 139-154. (Pubitemid 34729272)
-
(2002)
Journal of Molecular Biology
, vol.316
, Issue.1
, pp. 139-154
-
-
Madabushi, S.1
Yao, H.2
Marsh, M.3
Kristensen, D.M.4
Philippi, A.5
Sowa, M.E.6
Lichtarge, O.7
-
30
-
-
1542379652
-
Evolutionary Trace of G Protein-coupled Receptors Reveals Clusters of Residues That Determine Global and Class-specific Functions
-
DOI 10.1074/jbc.M312671200
-
Madabushi, S. et al. (2004) Evolutionary trace of G protein-coupled receptors reveals clusters of residues that determine global and class-specific functions. J. Biol. Chem., 279, 8126-8132. (Pubitemid 38294703)
-
(2004)
Journal of Biological Chemistry
, vol.279
, Issue.9
, pp. 8126-8132
-
-
Madabushi, S.1
Gross, A.K.2
Philippi, A.3
Meng, E.C.4
Wensel, T.G.5
Lichtarge, O.6
-
31
-
-
80053129150
-
Allostery in pharmacology: Thermodynamics, evolution and design
-
Maksay, G. (2011) Allostery in pharmacology: thermodynamics, evolution and design. Prog. Biophys. Mol. Biol., 106, 463-473.
-
(2011)
Prog. Biophys. Mol. Biol.
, vol.106
, pp. 463-473
-
-
Maksay, G.1
-
32
-
-
0037485769
-
Combining inference from evolution and geometric probability in protein structure evaluation
-
DOI 10.1016/S0022-2836(03)00663-6
-
Mihalek, I. et al. (2003) Combining inference from evolution and geometric probability in protein structure evaluation. J. Mol. Biol., 331, 263-279. (Pubitemid 36870792)
-
(2003)
Journal of Molecular Biology
, vol.331
, Issue.1
, pp. 263-279
-
-
Mihalek, I.1
Res, I.2
Yao, H.3
Lichtarge, O.4
-
33
-
-
1242339659
-
A family of evolution-entropy hybrid methods for ranking protein residues by importance
-
DOI 10.1016/j.jmb.2003.12.078
-
Mihalek, I. et al. (2004) A family of evolution-entropy hybrid methods for ranking protein residues by importance. J. Mol. Biol., 336, 1265-1282. (Pubitemid 38229712)
-
(2004)
Journal of Molecular Biology
, vol.336
, Issue.5
, pp. 1265-1282
-
-
Mihalek, I.1
Res, I.2
Lichtarge, O.3
-
34
-
-
33645024859
-
Evolutionary and structural feedback on selection of sequences for comparative analysis of proteins
-
Mihalek, I. et al. (2006a) Evolutionary and structural feedback on selection of sequences for comparative analysis of proteins. Proteins, 63, 87-99.
-
(2006)
Proteins
, vol.63
, pp. 87-99
-
-
Mihalek, I.1
-
35
-
-
32144437402
-
A structure and evolution-guided Monte Carlo sequence selection strategy for multiple alignment-based analysis of proteins
-
DOI 10.1093/bioinformatics/bti791
-
Mihalek, I. et al. (2006b) A structure and evolution guided monte carlo sequence selection strategy for multiple alignment-based analysis of proteins. Bioinformatics, 22, 149-156. (Pubitemid 43205400)
-
(2006)
Bioinformatics
, vol.22
, Issue.2
, pp. 149-156
-
-
Mihalek, I.1
Res, I.2
Lichtarge, O.3
-
36
-
-
0030614427
-
Receptor and βγ binding sites in the α subunit of the retinal G protein transducin
-
DOI 10.1126/science.275.5298.381
-
Onrust, R. et al. (1997) Receptor and betagamma binding sites in the alpha subunit of the retinal G protein transducin. Science, 275, 381-384. (Pubitemid 27051613)
-
(1997)
Science
, vol.275
, Issue.5298
, pp. 381-384
-
-
Onrust, R.1
Herzmark, P.2
Chi, P.3
Garcia, P.D.4
Lichtarge, O.5
Kingsley, C.6
Bourne, H.R.7
-
37
-
-
34548040966
-
Crystal structure of an ancient protein: Evolution by conformational epistasis
-
DOI 10.1126/science.1142819
-
Ortlund, E.A. et al. (2007) Crystal structure of an ancient protein: evolution by conformational epistasis. Science, 317, 1544-1548. (Pubitemid 47417432)
-
(2007)
Science
, vol.317
, Issue.5844
, pp. 1544-1548
-
-
Ortlund, E.A.1
Bridgham, J.T.2
Redinbo, M.R.3
Thornton, J.W.4
-
38
-
-
1842454912
-
Prediction of functional sites by analysis of sequence and structure conservation
-
DOI 10.1110/ps.03465504
-
Panchenko, A.R. et al. (2004) Prediction of functional sites by analysis of sequence and structure conservation. Protein Sci., 13, 884-892. (Pubitemid 38429212)
-
(2004)
Protein Science
, vol.13
, Issue.4
, pp. 884-892
-
-
Panchenko, A.R.1
Kondrashov, F.2
Bryant, S.3
-
39
-
-
33745599119
-
Phylogeny-independent detection of functional residues
-
DOI 10.1093/bioinformatics/btl104
-
Pazos, F. et al. (2006) Phylogeny-independent detection of functional residues. Bioinformatics, 22, 1440-1448. (Pubitemid 43985314)
-
(2006)
Bioinformatics
, vol.22
, Issue.12
, pp. 1440-1448
-
-
Pazos, F.1
Rausell, A.2
Valencia, A.3
-
40
-
-
54349091030
-
Protein co-evolution, co-adaptation and interactions
-
Pazos, F. and Valencia, A. (2008) Protein co-evolution, co-adaptation and interactions. EMBO J., 27, 2648-2655.
-
(2008)
EMBO J.
, vol.27
, pp. 2648-2655
-
-
Pazos, F.1
Valencia, A.2
-
41
-
-
0034843597
-
AL2CO: Calculation of positional conservation in a protein sequence alignment
-
Pei, J. and Grishin, N.V. (2001) AL2CO: calculation of positional conservation in a protein sequence alignment. Bioinformatics, 17, 700-712. (Pubitemid 32851378)
-
(2001)
Bioinformatics
, vol.17
, Issue.8
, pp. 700-712
-
-
Pei, J.1
Grishin, N.V.2
-
42
-
-
0002218484
-
Rate4Site: An algorithmic tool for the identification of functional regions in proteins by surface mapping of evolutionary determinants within their homologues
-
Pupko, T. et al. (2002) Rate4Site: an algorithmic tool for the identification of functional regions in proteins by surface mapping of evolutionary determinants within their homologues. Bioinformatics, 18, S71-S77. (Pubitemid 41185639)
-
(2002)
Bioinformatics
, vol.18
, Issue.SUPPL. 1
-
-
Pupko, T.1
Bell, R.E.2
Mayrose, I.3
Glaser, F.4
Ben-Tal, N.5
-
43
-
-
33845424990
-
Essential helix interactions in the anion transporter domain of prestin revealed by evolutionary trace analysis
-
DOI 10.1523/JNEUROSCI.2734-06.2006
-
Rajagopalan, L. et al. (2006) Essential helix interactions in the anion transporter domain of prestin revealed by evolutionary trace analysis. J. Neurosci., 26, 12727-12734. (Pubitemid 44904568)
-
(2006)
Journal of Neuroscience
, vol.26
, Issue.49
, pp. 12727-12734
-
-
Rajagopalan, L.1
Patel, N.2
Madabushi, S.3
Goddard, J.A.4
Anjan, V.5
Lin, F.6
Shope, C.7
Farrell, B.8
Lichtarge, O.9
Davidson, A.L.10
Brownell, W.E.11
Pereira, F.A.12
-
44
-
-
76649113438
-
Protein interactions and ligand binding: From protein subfamilies to functional specificity
-
Rausell, A. et al. (2010) Protein interactions and ligand binding: from protein subfamilies to functional specificity. Proc. Natl Acad. Sci. USA, 107, 1995-2000.
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, pp. 1995-2000
-
-
Rausell, A.1
-
45
-
-
20444462091
-
Correlated evolutionary pressure at interacting transcription factors and DNA response elements can guide the rational engineering of DNA binding specificity
-
DOI 10.1016/j.jmb.2005.04.054, PII S0022283605004808
-
Raviscioni, M. et al. (2005) Correlated evolutionary pressure at interacting transcription factors and dna response elements can guide the rational engineering of dna binding specificity. J. Mol. Biol., 350, 402-415. (Pubitemid 40828903)
-
(2005)
Journal of Molecular Biology
, vol.350
, Issue.3
, pp. 402-415
-
-
Raviscioni, M.1
Gu, P.2
Sattar, M.3
Cooney, A.J.4
Lichtarge, O.5
-
46
-
-
34247194102
-
Distinct faces of the Ku heterodimer mediate DNA repair and telomeric functions
-
DOI 10.1038/nsmb1214, PII NSMB1214
-
Ribes-Zamora, A. et al. (2007) Distinct faces of the Ku heterodimer mediate DNA repair versus telomeric functions. Nat. Struct. Mol. Biol., 14, 301-307. (Pubitemid 46608339)
-
(2007)
Nature Structural and Molecular Biology
, vol.14
, Issue.4
, pp. 301-307
-
-
Ribes-Zamora, A.1
Mihalek, I.2
Lichtarge, O.3
Bertuch, A.A.4
-
47
-
-
77952356281
-
Evolution-guided discovery and recoding of allosteric pathway specificity determinants in psychoactive bioamine receptors
-
Rodriguez, G. et al. (2010) Evolution-guided discovery and recoding of allosteric pathway specificity determinants in psychoactive bioamine receptors. Proc. Natl Acad. Sci. USA, 107, 7787-7792.
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, pp. 7787-7792
-
-
Rodriguez, G.1
-
48
-
-
77954065271
-
I-TASSER: A unified platform for automated protein structure and function prediction
-
Roy, A. et al. (2010) I-TASSER: a unified platform for automated protein structure and function prediction. Nat. Protocols, 5, 725-738.
-
(2010)
Nat. Protocols
, vol.5
, pp. 725-738
-
-
Roy, A.1
-
49
-
-
33644857279
-
Beta-arrestin-dependent, G protein-independent ERK1/2 activation by the beta2 adrenergic receptor
-
Shenoy, S. et al. (2006) Beta-arrestin-dependent, G protein-independent ERK1/2 activation by the beta2 adrenergic receptor. J. Biol. Chem., 281, 261-273.
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 261-273
-
-
Shenoy, S.1
-
50
-
-
0035126520
-
Prediction and confirmation of a site critical for effector regulation of RGS domain activity
-
DOI 10.1038/84974
-
Sowa, M. et al. (2001) Prediction and confirmation of a site critical for effector regulation of RGS domain activity. Nat. Struct. Biol., 8, 234-237. (Pubitemid 32180049)
-
(2001)
Nature Structural Biology
, vol.8
, Issue.3
, pp. 234-237
-
-
Sowa, M.E.1
He, W.2
Slep, K.C.3
Kercher, M.A.4
Lichtarge, O.5
Wensel, T.G.6
-
51
-
-
0034652331
-
A regulator of G protein signaling interaction surface linked to effector specificity
-
DOI 10.1073/pnas.030409597
-
Sowa, M.E. et al. (2000) A regulator of G protein signaling interaction surface linked to effector specificity. Proc. Natl Acad. Sci. USA, 97, 1483-1488. (Pubitemid 30118467)
-
(2000)
Proceedings of the National Academy of Sciences of the United States of America
, vol.97
, Issue.4
, pp. 1483-1488
-
-
Sowa, M.E.1
He, W.2
Wensel, T.G.3
Lichtarge, O.4
-
52
-
-
84866181982
-
Disentangling evolutionary signals: Conservation, specificity determining positions and coevolution. Implication for catalytic residue prediction
-
Teppa, E. et al. (2012) Disentangling evolutionary signals: conservation, specificity determining positions and coevolution. implication for catalytic residue prediction. BMC Bioinformatics, 13, 235.
-
(2012)
BMC Bioinformatics
, vol.13
, pp. 235
-
-
Teppa, E.1
-
53
-
-
70350635776
-
Exploitation of binding energy for catalysis and design
-
Thyme, S.B. et al. (2009) Exploitation of binding energy for catalysis and design. Nature, 461, 1300-1304.
-
(2009)
Nature
, vol.461
, pp. 1300-1304
-
-
Thyme, S.B.1
-
54
-
-
27544435126
-
Fast protein classification with multiple networks
-
DOI 10.1093/bioinformatics/bti1110
-
Tsuda, K. et al. (2005) Fast protein classification with multiple networks. Bioinformatics, 21 (Suppl. 2), ii59-ii65. (Pubitemid 41535429)
-
(2005)
Bioinformatics
, vol.21
, Issue.SUPPL. 2
-
-
Tsuda, K.1
Shin, H.J.2
Scholkopf, B.3
-
56
-
-
78650798477
-
Accurate protein structure annotation through competitive diffusion of enzymatic functions over a network of local evolutionary similarities
-
Venner, E. et al. (2010) Accurate protein structure annotation through competitive diffusion of enzymatic functions over a network of local evolutionary similarities. PLoS One, 5, e14286.
-
(2010)
PLoS One
, vol.5
-
-
Venner, E.1
-
57
-
-
47849086673
-
De-orphaning the structural proteome through reciprocal comparison of evolutionarily important structural features
-
Ward, R.M. et al. (2008) De-orphaning the structural proteome through reciprocal comparison of evolutionarily important structural features. PLoS One, 7;3, e2136.
-
(2008)
PLoS One
, vol.7
, Issue.3
-
-
Ward, R.M.1
-
58
-
-
77953963521
-
Sequence and structure continuity of evolutionary importance improves protein functional site discovery and annotation
-
Wilkins, A.D. et al. (2010) Sequence and structure continuity of evolutionary importance improves protein functional site discovery and annotation. Protein Sci., 19, 1296-1311.
-
(2010)
Protein Sci.
, vol.19
, pp. 1296-1311
-
-
Wilkins, A.D.1
-
59
-
-
0037423759
-
An accurate, sensitive, and scalable method to identify functional sites in protein structures
-
DOI 10.1016/S0022-2836(02)01336-0
-
Yao, H. et al. (2003) An accurate, sensitive, and scalable method to identify functional sites in protein structures. J. Mol. Biol., 326, 255-261. (Pubitemid 36279373)
-
(2003)
Journal of Molecular Biology
, vol.326
, Issue.1
, pp. 255-261
-
-
Yao, H.1
Kristensen, D.M.2
Mihalek, I.3
Sowa, M.E.4
Shaw, C.5
Kimmel, M.6
Kavraki, L.7
Lichtarge, O.8
|