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Volumn 4, Issue JUL, 2013, Pages

Metabolic analyses elucidate non-trivial gene targets for amplifying dihydroartemisinic acid production in yeast

Author keywords

Artemisinin; Extreme pathway; Flux balance analysis; Isotope labeling; Metabolic engineering; Metabolic flux analysis; Metabolic pathway; Minimization of metabolic adjustment

Indexed keywords

ARTEMISININ; ASPARTATE AMINOTRANSFERASE; DIHYDROARTEMISINIC ACID; GLUCOSE 6 PHOSPHATE DEHYDROGENASE; MALATE DEHYDROGENASE (NADP); NICOTINAMIDE ADENINE DINUCLEOTIDE PHOSPHATE; UNCLASSIFIED DRUG;

EID: 84885352221     PISSN: None     EISSN: 1664302X     Source Type: Journal    
DOI: 10.3389/fmicb.2013.00200     Document Type: Article
Times cited : (11)

References (67)
  • 1
    • 84870668228 scopus 로고    scopus 로고
    • Parallel labeling experiments with [1,2-13C]glucose and [U-13C]glutamine provide new insights into CHO cell metabolism
    • doi: 10.1016/j.ymben.2012.10.001
    • Ahn, W. S., and Antoniewicz, M. R. (2013). Parallel labeling experiments with [1,2-13C]glucose and [U-13C]glutamine provide new insights into CHO cell metabolism. Metab. Eng. 15, 34-47. doi: 10.1016/j.ymben.2012.10.001
    • (2013) Metab. Eng. , vol.15 , pp. 34-47
    • Ahn, W.S.1    Antoniewicz, M.R.2
  • 2
    • 18844392599 scopus 로고    scopus 로고
    • Identifying gene targets for the metabolic engineering of lycopene biosynthesis in Escherichia coli
    • doi: 10.1016/j.ymben.2004.12.003
    • Alper, H., Jin, Y.-S., Moxley, J. F., and Stephanopoulos, G. (2005). Identifying gene targets for the metabolic engineering of lycopene biosynthesis in Escherichia coli. Metab. Eng. 7, 155-164. doi: 10.1016/j.ymben.2004.12.003
    • (2005) Metab. Eng. , vol.7 , pp. 155-164
    • Alper, H.1    Jin, Y.-S.2    Moxley, J.F.3    Stephanopoulos, G.4
  • 3
    • 70449592325 scopus 로고    scopus 로고
    • Enhancing sesquiterpene production in Saccharomyces cerevisiae through in silico driven metabolic engineering
    • doi: 10.1016/j.ymben.2009.07.001
    • Asadollahi, M. A., Maury, J., Patil, K. R., Schalk, M., Clark, A., and Nielsen, J. (2009). Enhancing sesquiterpene production in Saccharomyces cerevisiae through in silico driven metabolic engineering. Metab. Eng. 11, 328-334. doi: 10.1016/j.ymben.2009.07.001
    • (2009) Metab. Eng. , vol.11 , pp. 328-334
    • Asadollahi, M.A.1    Maury, J.2    Patil, K.R.3    Schalk, M.4    Clark, A.5    Nielsen, J.6
  • 4
    • 84865009936 scopus 로고    scopus 로고
    • Dihydroartemisinin exerts its anticancer activity through depleting cellular iron via transferrin receptor-1
    • doi: 10.1371/journal.pone.0042703
    • Ba, Q., Zhou, N., Duan, J., Chen, T., Hao, M., Yang, X., et al. (2012). Dihydroartemisinin exerts its anticancer activity through depleting cellular iron via transferrin receptor-1. PLoS ONE 7:e42703. doi: 10.1371/journal.pone.0042703
    • (2012) PLoS ONE , vol.7
    • Ba, Q.1    Zhou, N.2    Duan, J.3    Chen, T.4    Hao, M.5    Yang, X.6
  • 5
    • 79952106791 scopus 로고    scopus 로고
    • From zero to hero - design-based systems metabolic engineering of Corynebacterium glutamicum for L-lysine production
    • doi: 10.1016/j.ymben.2011.01.003
    • Becker, J., Zelder, O., Häfner, S., Schröder, H., and Wittmann, C. (2011). From zero to hero - design-based systems metabolic engineering of Corynebacterium glutamicum for L-lysine production. Metab. Eng. 13, 159-168. doi: 10.1016/j.ymben.2011.01.003
    • (2011) Metab. Eng. , vol.13 , pp. 159-168
    • Becker, J.1    Zelder, O.2    Häfner, S.3    Schröder, H.4    Wittmann, C.5
  • 6
    • 17544366029 scopus 로고    scopus 로고
    • Expa: a program for calculating extreme pathways in biochemical reaction networks
    • doi: 10.1093/bioinformatics/bti228
    • Bell, S. L., and Palsson, B. Ø. (2004). Expa: a program for calculating extreme pathways in biochemical reaction networks. Bioinformatics 21, 1739-1740. doi: 10.1093/bioinformatics/bti228
    • (2004) Bioinformatics , vol.21 , pp. 1739-1740
    • Bell, S.L.1    Palsson, B.Ø.2
  • 7
    • 13544263331 scopus 로고    scopus 로고
    • Identification of intermediates and enzymes involved in the early steps of artemisinin biosynthesis in Artemisia annua
    • doi: 10.1055/s-2005-837749
    • Bertea, C. M., Freije, J. R., van der Woude, H., Verstappen, F. W., Perk, L., Marquez, V., et al. (2005). Identification of intermediates and enzymes involved in the early steps of artemisinin biosynthesis in Artemisia annua. Planta Med. 71, 40-47. doi: 10.1055/s-2005-837749
    • (2005) Planta Med. , vol.71 , pp. 40-47
    • Bertea, C.M.1    Freije, J.R.2    van der Woude, H.3    Verstappen, F.W.4    Perk, L.5    Marquez, V.6
  • 8
    • 0346964232 scopus 로고    scopus 로고
    • In vivo transformations of dihydroartemisinic acid in Artemisia annua plants
    • doi: 10.1016/j.tet.2003.11.070
    • Brown, G. D., and Sy, L.-K. (2004). In vivo transformations of dihydroartemisinic acid in Artemisia annua plants. Tetrahedron 60, 1139-1159. doi: 10.1016/j.tet.2003.11.070
    • (2004) Tetrahedron , vol.60 , pp. 1139-1159
    • Brown, G.D.1    Sy, L.-K.2
  • 9
    • 0020614458 scopus 로고
    • A theoretical analysis of NADPH production and consumption in yeasts
    • doi: 10.1099/00221287-129-4-953
    • Bruinenberg, P. M., Dijken, J. P. V., and Scheffers, W. A. (1983). A theoretical analysis of NADPH production and consumption in yeasts. J. Gen. Microbiol. 129, 953-964. doi: 10.1099/00221287-129-4-953
    • (1983) J. Gen. Microbiol. , vol.129 , pp. 953-964
    • Bruinenberg, P.M.1    Dijken, J.P.V.2    Scheffers, W.A.3
  • 10
    • 0242487787 scopus 로고    scopus 로고
    • Optknock: a bilevel programming framework for identifying gene knockout strategies for microbial strain optimization
    • doi: 10.1002/bit.10803
    • Burgard, A. P., Pharkya, P., and Maranas, C. D. (2003). Optknock: a bilevel programming framework for identifying gene knockout strategies for microbial strain optimization. Biotechnol. Bioeng. 84, 647-657. doi: 10.1002/bit.10803
    • (2003) Biotechnol. Bioeng. , vol.84 , pp. 647-657
    • Burgard, A.P.1    Pharkya, P.2    Maranas, C.D.3
  • 12
    • 56549084929 scopus 로고    scopus 로고
    • Making artemisinin
    • doi: 10.1016/j.phytochem.2008.10.001
    • Covello, P. S. (2008). Making artemisinin. Phytochemistry 69, 2881-2885. doi: 10.1016/j.phytochem.2008.10.001
    • (2008) Phytochemistry , vol.69 , pp. 2881-2885
    • Covello, P.S.1
  • 13
    • 70449732094 scopus 로고    scopus 로고
    • Artemisinin-based combination therapies: a vital tool in efforts to eliminate malaria
    • doi: 10.1038/nrmiro2239
    • Eastman, R. T., and Fidock, D. A. (2009). Artemisinin-based combination therapies: a vital tool in efforts to eliminate malaria. Nat. Rev. Microbiol. 7, 864-874. doi: 10.1038/nrmiro2239
    • (2009) Nat. Rev. Microbiol. , vol.7 , pp. 864-874
    • Eastman, R.T.1    Fidock, D.A.2
  • 14
    • 78149359284 scopus 로고    scopus 로고
    • Shrinking the malaria map: progress and prospects
    • doi: 10.1016/S0140-6736(10)61270-6
    • Feachem, R. G., Phillips, A. A., Hwang, J., Cotter, C., Wielgosz, B., Greenwood, B. M., et al. (2010). Shrinking the malaria map: progress and prospects. Lancet 376, 1566-1578. doi: 10.1016/S0140-6736(10)61270-6
    • (2010) Lancet , vol.376 , pp. 1566-1578
    • Feachem, R.G.1    Phillips, A.A.2    Hwang, J.3    Cotter, C.4    Wielgosz, B.5    Greenwood, B.M.6
  • 15
    • 78649814437 scopus 로고    scopus 로고
    • Metabolic flux analysis of the mixotrophic metabolisms in the green sulfur bacterium Chlorobaculum tepidum
    • doi: 10.1074/jbc. M110.162958
    • Feng, X., Tang, K.-H., Blankenship, R. E., and Tang, Y. J. (2010). Metabolic flux analysis of the mixotrophic metabolisms in the green sulfur bacterium Chlorobaculum tepidum. J. Biol. Chem. 285, 39544-39550. doi: 10.1074/jbc. M110.162958
    • (2010) J. Biol. Chem. , vol.285 , pp. 39544-39550
    • Feng, X.1    Tang, K.-H.2    Blankenship, R.E.3    Tang, Y.J.4
  • 16
    • 77952827501 scopus 로고    scopus 로고
    • Flavonoids from Artemisia annua L. as antioxidants and their potential synergism with artemisinin against malaria and cancer
    • doi: 10.3390/molecules15053135
    • Ferreira, J. F. S., Luthria, D. L., Sasaki, T., and Heyerick, A. (2010). Flavonoids from Artemisia annua L. as antioxidants and their potential synergism with artemisinin against malaria and cancer. Molecules 15, 3135-3170. doi: 10.3390/molecules15053135
    • (2010) Molecules , vol.15 , pp. 3135-3170
    • Ferreira, J.F.S.1    Luthria, D.L.2    Sasaki, T.3    Heyerick, A.4
  • 17
    • 84885425764 scopus 로고    scopus 로고
    • Artemisinin induces A549 cell apoptosis dominantly via a reactive oxygen species-mediated amplification activation loop among caspase-9, -8 and -3
    • doi: 10.1007/s10495-013-0857-z [Epub ahead of print]
    • Gao, W., Xiao, F., Wang, X., and Chen, T. (2013). Artemisinin induces A549 cell apoptosis dominantly via a reactive oxygen species-mediated amplification activation loop among caspase-9, -8 and -3. Apoptosis doi: 10.1007/s10495-013-0857-z [Epub ahead of print].
    • (2013) Apoptosis
    • Gao, W.1    Xiao, F.2    Wang, X.3    Chen, T.4
  • 18
    • 58449106341 scopus 로고    scopus 로고
    • Flux balance analysis of barley seeds: a computational approach to study systemic properties of central metabolism
    • doi: 10.1104/pp.108.129635
    • Grafahrend-Belau, E., Schreiber, F., Koschutzki, D., and Junker, B. H. (2009). Flux balance analysis of barley seeds: a computational approach to study systemic properties of central metabolism. Plant Physiol. 149, 585-598. doi: 10.1104/pp.108.129635
    • (2009) Plant Physiol. , vol.149 , pp. 585-598
    • Grafahrend-Belau, E.1    Schreiber, F.2    Koschutzki, D.3    Junker, B.H.4
  • 20
    • 77956795100 scopus 로고    scopus 로고
    • ATP-citrate lyase is required for production of cytosolic acetyl coenzyme A and development in Aspergillus nidulans
    • doi: 10.1128/EC.00080-10
    • Hynes, M. J., and Murray, S. L. (2010). ATP-citrate lyase is required for production of cytosolic acetyl coenzyme A and development in Aspergillus nidulans. Eukaryot. Cell 9, 1039-1048. doi: 10.1128/EC.00080-10
    • (2010) Eukaryot. Cell , vol.9 , pp. 1039-1048
    • Hynes, M.J.1    Murray, S.L.2
  • 21
    • 35248815969 scopus 로고    scopus 로고
    • Ensuring sustained ACT production and reliable artemisinin supply
    • doi: 10.1186/1475-2875-6-125
    • Kindermans, J.-M., Pilloy, J., Olliaro, P., and Gomes, M. (2007). Ensuring sustained ACT production and reliable artemisinin supply. Malar. J. 6, 125. doi: 10.1186/1475-2875-6-125
    • (2007) Malar. J. , vol.6 , pp. 125
    • Kindermans, J.-M.1    Pilloy, J.2    Olliaro, P.3    Gomes, M.4
  • 22
    • 33750623278 scopus 로고    scopus 로고
    • Elevation of glucose 6-phosphate dehydrogenase activity increases xylitol production in recombinant Saccharomyces cerevisiae
    • doi: 10.1016/j.molcatb.2006.06.014
    • Kwon, D.-H., Kim, M.-D., Lee, T.-H., Oh, Y.-J., Ryu, Y.-W., and Seo, J.-H. (2006). Elevation of glucose 6-phosphate dehydrogenase activity increases xylitol production in recombinant Saccharomyces cerevisiae. J. Mol. Catal. B Enzym. 43, 86-89. doi: 10.1016/j.molcatb.2006.06.014
    • (2006) J. Mol. Catal. B Enzym. , vol.43 , pp. 86-89
    • Kwon, D.-H.1    Kim, M.-D.2    Lee, T.-H.3    Oh, Y.-J.4    Ryu, Y.-W.5    Seo, J.-H.6
  • 23
    • 56249130054 scopus 로고    scopus 로고
    • Developing an industrial artemisinic acid fermentation process to support the cost-effective production of antimalarial artemisinin-based combination therapies
    • doi: 10.1002/btpr.27
    • Lenihan, J. R., Tsuruta, H., Diola, D., Renninger, N. S., and Regentin, R. (2008). Developing an industrial artemisinic acid fermentation process to support the cost-effective production of antimalarial artemisinin-based combination therapies. Biotechnol. Prog. 24, 1026-1032. doi: 10.1002/btpr.27
    • (2008) Biotechnol. Prog. , vol.24 , pp. 1026-1032
    • Lenihan, J.R.1    Tsuruta, H.2    Diola, D.3    Renninger, N.S.4    Regentin, R.5
  • 24
    • 84857029523 scopus 로고    scopus 로고
    • Continuous-flow synthesis of the anti-malaria drug artemisinin
    • doi: 10.1002/anie.201107446
    • Lévesque, F., and Seeberger, P. H. (2012). Continuous-flow synthesis of the anti-malaria drug artemisinin. Angew. Chem. Int. Ed. Engl. 51, 1706-1709. doi: 10.1002/anie.201107446
    • (2012) Angew. Chem. Int. Ed. Engl. , vol.51 , pp. 1706-1709
    • Lévesque, F.1    Seeberger, P.H.2
  • 25
    • 79959310056 scopus 로고    scopus 로고
    • A novel purification method of artemisinin from Artemisia annua
    • doi: 10.1016/j.indcrop.2011.03.023
    • Liu, N. Q., Schuehly, W., von Freyhold, M., and van der Kooy, F. (2011). A novel purification method of artemisinin from Artemisia annua. Ind. Crops Prod. 34, 1084-1088. doi: 10.1016/j.indcrop.2011.03.023
    • (2011) Ind. Crops Prod. , vol.34 , pp. 1084-1088
    • Liu, N.Q.1    Schuehly, W.2    von Freyhold, M.3    van der Kooy, F.4
  • 26
    • 77953514760 scopus 로고    scopus 로고
    • Which metabolic pathways generate and characterize the flux space? A comparison among elementary modes, extreme pathways and minimal generators
    • doi: 10.1155/2010/753904
    • Llaneras, F., and Picó, J. (2010). Which metabolic pathways generate and characterize the flux space? A comparison among elementary modes, extreme pathways and minimal generators. J. Biomed. Biotechnol. 2010, 753904 doi: 10.1155/2010/753904
    • (2010) J. Biomed. Biotechnol. , vol.2010 , pp. 753904
    • Llaneras, F.1    Picó, J.2
  • 27
    • 65649126379 scopus 로고    scopus 로고
    • Connecting extracellular metabolomic measurements to intracellular flux states in yeast
    • doi: 10.1186/1752-0509-3-37
    • Mo, M. L., Palsson, B. O., and Herrgård, M. J. (2009). Connecting extracellular metabolomic measurements to intracellular flux states in yeast. BMC Syst. Biol. 3:37. doi: 10.1186/1752-0509-3-37
    • (2009) BMC Syst. Biol. , vol.3 , pp. 37
    • Mo, M.L.1    Palsson, B.O.2    Herrgård, M.J.3
  • 28
    • 84872376676 scopus 로고    scopus 로고
    • Isotopically nonstationary 13C flux analysis of Myc-induced metabolic reprogramming in B-cells
    • doi: 10.1016/j.ymben.2012.07.008
    • Murphy, T. A., Dang, C. V., and Young, J. D. (2013). Isotopically nonstationary 13C flux analysis of Myc-induced metabolic reprogramming in B-cells. Metab. Eng. 15, 206-217. doi: 10.1016/j.ymben.2012.07.008
    • (2013) Metab. Eng. , vol.15 , pp. 206-217
    • Murphy, T.A.1    Dang, C.V.2    Young, J.D.3
  • 29
    • 84874462051 scopus 로고    scopus 로고
    • Designer labels for plant metabolism: statistical design of isotope labeling experiments for improved quantification of flux in complex plant metabolic networks
    • doi: 10.1039/c2mb25253h
    • Nargund, S., and Sriram, G. (2013). Designer labels for plant metabolism: statistical design of isotope labeling experiments for improved quantification of flux in complex plant metabolic networks. Mol. Biosyst. 9, 99-112. doi: 10.1039/c2mb25253h
    • (2013) Mol. Biosyst. , vol.9 , pp. 99-112
    • Nargund, S.1    Sriram, G.2
  • 30
    • 0035862739 scopus 로고    scopus 로고
    • Expression of a cytoplasmic transhydrogenase in Saccharomyces cerevisiae results in formation of 2-oxoglutarate due to depletion of the NADPH pool
    • doi: 10.1002/1097-0061(200101)18:1
    • Nissen, T. L., Anderlund, M., Nielsen, J., Villadsen, J., and Kielland-Brandt, M. C. (2001). Expression of a cytoplasmic transhydrogenase in Saccharomyces cerevisiae results in formation of 2-oxoglutarate due to depletion of the NADPH pool. Yeast 18, 19-32. doi: 10.1002/1097-0061(200101)18:1
    • (2001) Yeast , vol.18 , pp. 19-32
    • Nissen, T.L.1    Anderlund, M.2    Nielsen, J.3    Villadsen, J.4    Kielland-Brandt, M.C.5
  • 31
    • 77955093984 scopus 로고    scopus 로고
    • Changes in the burden of malaria in sub-Saharan Africa
    • doi: 10.1016/S1473-3099(10)70096-7
    • O'Meara, W. P., Mangeni, J. N., Steketee, R., and Greenwood, B. (2010). Changes in the burden of malaria in sub-Saharan Africa. Lancet Infect. Dis. 10, 545-555. doi: 10.1016/S1473-3099(10)70096-7
    • (2010) Lancet Infect. Dis. , vol.10 , pp. 545-555
    • O'Meara, W.P.1    Mangeni, J.N.2    Steketee, R.3    Greenwood, B.4
  • 32
    • 77749320898 scopus 로고    scopus 로고
    • What is flux balance analysis?
    • doi: 10.1038/nbt.1614
    • Orth, J. D., Thiele, I., and Palsson, B. O. (2010). What is flux balance analysis? Nat. Biotechnol. 28, 245-248. doi: 10.1038/nbt.1614
    • (2010) Nat. Biotechnol. , vol.28 , pp. 245-248
    • Orth, J.D.1    Thiele, I.2    Palsson, B.O.3
  • 35
    • 84867132196 scopus 로고    scopus 로고
    • Scheffersomyces stipitis: a comparative systems biology study with the Crabtree positive yeast Saccharomyces cerevisiae
    • doi: 10.1186/1475-2859-11-136
    • Papini, M., Nookaew, I., Uhlén, M., and Nielsen, J. (2012). Scheffersomyces stipitis: a comparative systems biology study with the Crabtree positive yeast Saccharomyces cerevisiae. Microb. Cell Fact. 11, 136. doi: 10.1186/1475-2859-11-136
    • (2012) Microb. Cell Fact. , vol.11 , pp. 136
    • Papini, M.1    Nookaew, I.2    Uhlén, M.3    Nielsen, J.4
  • 36
    • 34249934691 scopus 로고    scopus 로고
    • Metabolic engineering of Escherichia coli for the production of l-valine based on transcriptome analysis and in silico gene knockout simulation
    • doi: 10.1073/pnas.0702609104
    • Park, J. H., Lee, K. H., Kim, T. Y., and Lee, S. Y. (2007). Metabolic engineering of Escherichia coli for the production of l-valine based on transcriptome analysis and in silico gene knockout simulation. Proc. Natl. Acad. Sci. U.S.A. 104, 7797-7802. doi: 10.1073/pnas.0702609104
    • (2007) Proc. Natl. Acad. Sci. U.S.A. , vol.104 , pp. 7797-7802
    • Park, J.H.1    Lee, K.H.2    Kim, T.Y.3    Lee, S.Y.4
  • 37
    • 8744224466 scopus 로고    scopus 로고
    • OptStrain: a computational framework for redesign of microbial production systems
    • doi: 10.1101/gr.2872004
    • Pharkya, P., Burgard, A. P., and Maranas, C. D. (2004). OptStrain: a computational framework for redesign of microbial production systems. Genome Res. 14, 2367-2376. doi: 10.1101/gr.2872004
    • (2004) Genome Res. , vol.14 , pp. 2367-2376
    • Pharkya, P.1    Burgard, A.P.2    Maranas, C.D.3
  • 38
    • 72849128957 scopus 로고    scopus 로고
    • Artemisinin combination therapy for malaria: beyond good efficacy
    • doi: 10.1086/647947
    • Price, R. N., and Douglas, N. M. (2009). Artemisinin combination therapy for malaria: beyond good efficacy. Clin. Infect. Dis. 49, 1638-1640. doi: 10.1086/647947
    • (2009) Clin. Infect. Dis. , vol.49 , pp. 1638-1640
    • Price, R.N.1    Douglas, N.M.2
  • 39
    • 77954590959 scopus 로고    scopus 로고
    • Optforce: an optimization procedure for identifying all genetic manipulations leading to targeted overproductions
    • doi: 10.1371/journal.pcbi.1000744
    • Ranganathan, S., Suthers, P. F., and Maranas, C. D. (2010). Optforce: an optimization procedure for identifying all genetic manipulations leading to targeted overproductions. PLoS Comput. Biol. 6:e1000744. doi: 10.1371/journal.pcbi.1000744
    • (2010) PLoS Comput. Biol. , vol.6
    • Ranganathan, S.1    Suthers, P.F.2    Maranas, C.D.3
  • 40
    • 84869027982 scopus 로고    scopus 로고
    • An integrated computational and experimental study for overproducing fatty acids in Escherichia coli
    • doi: 10.1016/j.ymben.2012.08.008
    • Ranganathan, S., Tee, T. W., Chowdhury, A., Zomorrodi, A. R., Yoon, J. M., Fu, Y., et al. (2012). An integrated computational and experimental study for overproducing fatty acids in Escherichia coli. Metab. Eng. 14, 687-704. doi: 10.1016/j.ymben.2012.08.008
    • (2012) Metab. Eng. , vol.14 , pp. 687-704
    • Ranganathan, S.1    Tee, T.W.2    Chowdhury, A.3    Zomorrodi, A.R.4    Yoon, J.M.5    Fu, Y.6
  • 41
    • 33645870422 scopus 로고    scopus 로고
    • Production of the antimalarial drug precursor artemisinic acid in engineered yeast
    • doi: 10.1038/nature04640
    • Ro, D.-K., Paradise, E. M., Ouellet, M., Fisher, K. J., Newman, K. L., Ndungu, J. M., et al. (2006). Production of the antimalarial drug precursor artemisinic acid in engineered yeast. Nature 440, 940-943. doi: 10.1038/nature04640
    • (2006) Nature , vol.440 , pp. 940-943
    • Ro, D.-K.1    Paradise, E.M.2    Ouellet, M.3    Fisher, K.J.4    Newman, K.L.5    Ndungu, J.M.6
  • 42
    • 0029795209 scopus 로고    scopus 로고
    • Evolution of carbohydrate metabolic pathways
    • doi: 10.1016/0923-2508(96)83998-2
    • Romano, A. H., and Conway, T. (1996). Evolution of carbohydrate metabolic pathways. Res. Microbiol. 147, 448-455. doi: 10.1016/0923-2508(96)83998-2
    • (1996) Res. Microbiol. , vol.147 , pp. 448-455
    • Romano, A.H.1    Conway, T.2
  • 43
    • 77955002164 scopus 로고    scopus 로고
    • The molecular cloning of dihydroartemisinic aldehyde reductase and its implication in artemisinin biosynthesis in Artemisia annua
    • doi: 10.1055/s-0030-1249930
    • Rydén, A.-M., Ruyter-Spira, C., Quax, W. J., Osada, H., Muranaka, T., Kayser, O., et al. (2010). The molecular cloning of dihydroartemisinic aldehyde reductase and its implication in artemisinin biosynthesis in Artemisia annua. Planta Med. 76, 1778-1783. doi: 10.1055/s-0030-1249930
    • (2010) Planta Med. , vol.76 , pp. 1778-1783
    • Rydén, A.-M.1    Ruyter-Spira, C.2    Quax, W.J.3    Osada, H.4    Muranaka, T.5    Kayser, O.6
  • 44
    • 79551662521 scopus 로고    scopus 로고
    • Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0
    • doi: 10.1038/nprot.2011.308
    • Schellenberger, J., Que, R., Fleming, R. M. T., Thiele, I., Orth, J. D., Feist, A. M., et al. (2011). Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0. Nat. Protoc. 6, 1290-1307. doi: 10.1038/nprot.2011.308
    • (2011) Nat. Protoc. , vol.6 , pp. 1290-1307
    • Schellenberger, J.1    Que, R.2    Fleming, R.M.T.3    Thiele, I.4    Orth, J.D.5    Feist, A.M.6
  • 45
    • 0034615791 scopus 로고    scopus 로고
    • Theory for the systemic definition of metabolic pathways and their use in interpreting metabolic function from a pathway-oriented perspective
    • doi: 10.1006/jtbi.2000.1073
    • Schilling, C. H., Letscher, D., and Palsson, B. Ø. (2000). Theory for the systemic definition of metabolic pathways and their use in interpreting metabolic function from a pathway-oriented perspective. J. Theor. Biol. 203, 229-248. doi: 10.1006/jtbi.2000.1073
    • (2000) J. Theor. Biol. , vol.203 , pp. 229-248
    • Schilling, C.H.1    Letscher, D.2    Palsson, B.Ø.3
  • 46
    • 0034615788 scopus 로고    scopus 로고
    • Assessment of the metabolic capabilities of Haemophilus influenzae Rd through a genome-scale pathway analysis
    • doi: 10.1006/jtbi.2000.1088
    • Schilling, C. H., and Palsson, B. O. (2000). Assessment of the metabolic capabilities of Haemophilus influenzae Rd through a genome-scale pathway analysis. J. Theor. Biol. 203, 249-283. doi: 10.1006/jtbi.2000.1088
    • (2000) J. Theor. Biol. , vol.203 , pp. 249-283
    • Schilling, C.H.1    Palsson, B.O.2
  • 47
    • 0037069467 scopus 로고    scopus 로고
    • Analysis of optimality in natural and perturbed metabolic networks
    • doi: 10.1073/pnas.232349399
    • Segrè, D., Vitkup, D., and Church, G. M. (2002). Analysis of optimality in natural and perturbed metabolic networks. Proc. Natl. Acad. Sci. U.S.A. 99, 15112-15117. doi: 10.1073/pnas.232349399
    • (2002) Proc. Natl. Acad. Sci. U.S.A. , vol.99 , pp. 15112-15117
    • Segrè, D.1    Vitkup, D.2    Church, G.M.3
  • 48
    • 12244298643 scopus 로고    scopus 로고
    • Quantification of compartmented metabolic fluxes in developing soybean embryos by employing biosynthetically directed fractional 13C labeling, two-dimensional [13C, 1H] nuclear magnetic resonance, and comprehensive isotopomer balancing
    • doi: 10.1104/pp.104.050625
    • Sriram, G., Fulton, D. B., Iyer, V. V., Peterson, J. M., Zhou, R., Westgate, M. E., et al. (2004). Quantification of compartmented metabolic fluxes in developing soybean embryos by employing biosynthetically directed fractional 13C labeling, two-dimensional [13C, 1H] nuclear magnetic resonance, and comprehensive isotopomer balancing. Plant Physiol. 136, 3043-3057. doi: 10.1104/pp.104.050625
    • (2004) Plant Physiol. , vol.136 , pp. 3043-3057
    • Sriram, G.1    Fulton, D.B.2    Iyer, V.V.3    Peterson, J.M.4    Zhou, R.5    Westgate, M.E.6
  • 49
    • 38049152917 scopus 로고    scopus 로고
    • Global metabolic effects of glycerol kinase overexpression in rat hepatoma cells
    • doi: 10.1016/j.ymgme.2007.09.008
    • Sriram, G., Rahib, L., He, J.-S., Campos, A. E., Parr, L. S., Liao, J. C., et al. (2008). Global metabolic effects of glycerol kinase overexpression in rat hepatoma cells. Mol. Genet. Metab. 93, 145-159. doi: 10.1016/j.ymgme.2007.09.008
    • (2008) Mol. Genet. Metab. , vol.93 , pp. 145-159
    • Sriram, G.1    Rahib, L.2    He, J.-S.3    Campos, A.E.4    Parr, L.S.5    Liao, J.C.6
  • 51
    • 0037185534 scopus 로고    scopus 로고
    • The mechanism of the spontaneous autoxidation of dihydroartemisinic acid
    • doi: 10.1016/S0040-4020(01)01193-0
    • Sy, L.-K., and Brown, G. D. (2002). The mechanism of the spontaneous autoxidation of dihydroartemisinic acid. Tetrahedron 58, 897-908. doi: 10.1016/S0040-4020(01)01193-0
    • (2002) Tetrahedron , vol.58 , pp. 897-908
    • Sy, L.-K.1    Brown, G.D.2
  • 52
    • 0029146299 scopus 로고
    • Biosynthetically directed fractional 13C-labeling of proteinogenic amino acids. An efficient analytical tool to investigate intermediary metabolism
    • doi: 10.1111/j.1432-1033.1995.tb20829.x
    • Szyperski, T. (1995). Biosynthetically directed fractional 13C-labeling of proteinogenic amino acids. An efficient analytical tool to investigate intermediary metabolism. Eur. J. Biochem. 232, 433-448. doi: 10.1111/j.1432-1033.1995.tb20829.x
    • (1995) Eur. J. Biochem. , vol.232 , pp. 433-448
    • Szyperski, T.1
  • 53
    • 0031594984 scopus 로고    scopus 로고
    • 13C-NMR, MS and metabolic flux balancing in biotechnology research
    • Szyperski, T. (1998). 13C-NMR, MS and metabolic flux balancing in biotechnology research. Q. Rev. Biophy. 31, 41-106.
    • (1998) Q. Rev. Biophy. , vol.31 , pp. 41-106
    • Szyperski, T.1
  • 54
    • 32344437343 scopus 로고    scopus 로고
    • Artemisia annua L. (Asteraceae) trichome-specific cDNAs reveal CYP71AV1, a cytochrome P450 with a key role in the biosynthesis of the antimalarial sesquiterpene lactone artemisinin
    • doi: 10.1016/j.febslet.2006.01.065
    • Teoh, K., Polichuk, D., Reed, D., Nowak, G., and Covello, P. (2006). Artemisia annua L. (Asteraceae) trichome-specific cDNAs reveal CYP71AV1, a cytochrome P450 with a key role in the biosynthesis of the antimalarial sesquiterpene lactone artemisinin. FEBS Lett. 580, 1411-1416. doi: 10.1016/j.febslet.2006.01.065
    • (2006) FEBS Lett. , vol.580 , pp. 1411-1416
    • Teoh, K.1    Polichuk, D.2    Reed, D.3    Nowak, G.4    Covello, P.5
  • 55
    • 70549086797 scopus 로고    scopus 로고
    • Validation of reference genes for quantitative expression analysis by real-time RT-PCR in Saccharomyces cerevisiae
    • doi: 10.1186/1471-2199-10-99
    • Teste, M.-A., Duquenne, M., François, J. M., and Parrou, J.-L. (2009). Validation of reference genes for quantitative expression analysis by real-time RT-PCR in Saccharomyces cerevisiae. BMC Mol. Biol. 10:99. doi: 10.1186/1471-2199-10-99
    • (2009) BMC Mol. Biol. , vol.10 , pp. 99
    • Teste, M.-A.1    Duquenne, M.2    François, J.M.3    Parrou, J.-L.4
  • 56
    • 79959216987 scopus 로고    scopus 로고
    • Statistics-based model for prediction of chemical biosynthesis yield from Saccharomyces cerevisiae
    • doi: 10.1186/1475-2859-10-45
    • Varman, A. M., Xiao, Y., Leonard, E., and Tang, Y. J. (2011). Statistics-based model for prediction of chemical biosynthesis yield from Saccharomyces cerevisiae. Microb. Cell Fact. 10, 45. doi: 10.1186/1475-2859-10-45
    • (2011) Microb. Cell Fact. , vol.10 , pp. 45
    • Varman, A.M.1    Xiao, Y.2    Leonard, E.3    Tang, Y.J.4
  • 57
    • 0033983929 scopus 로고    scopus 로고
    • Seasonal variation of artemisinin and its biosynthetic precursors in plants of Artemisia annua of different geographical origin: proof for the existence of chemotypes
    • doi: 10.1055/s-2000-11115
    • Wallaart, T. E., Pras, N., Beekman, A. C., and Quax, W. J. (2000). Seasonal variation of artemisinin and its biosynthetic precursors in plants of Artemisia annua of different geographical origin: proof for the existence of chemotypes. Planta Med. 66, 57-62. doi: 10.1055/s-2000-11115
    • (2000) Planta Med. , vol.66 , pp. 57-62
    • Wallaart, T.E.1    Pras, N.2    Beekman, A.C.3    Quax, W.J.4
  • 58
    • 33749049315 scopus 로고    scopus 로고
    • Artemisinin: the biosynthetic pathway and its regulation in Artemisia annua, a terpenoid-rich species
    • doi: 10.1079/IVP2006782
    • Weathers, P., Elkholy, S., and Wobbe, K. (2006). Artemisinin: the biosynthetic pathway and its regulation in Artemisia annua, a terpenoid-rich species. In Vitro Cell. Dev. Biol. Plant 42, 309-317. doi: 10.1079/IVP2006782
    • (2006) In Vitro Cell. Dev. Biol. Plant , vol.42 , pp. 309-317
    • Weathers, P.1    Elkholy, S.2    Wobbe, K.3
  • 59
    • 84856389651 scopus 로고    scopus 로고
    • Production of amorphadiene in yeast, and its conversion to dihydroartemisinic acid, precursor to the antimalarial agent artemisinin
    • doi: 10.1073/pnas.1110740109
    • Westfall, P. J., Pitera, D. J., Lenihan, J. R., Eng, D., Woolard, F. X., Regentin, R., et al. (2012). Production of amorphadiene in yeast, and its conversion to dihydroartemisinic acid, precursor to the antimalarial agent artemisinin. Proc. Natl. Acad. Sci. U.S.A. 109, E111-E118. doi: 10.1073/pnas.1110740109
    • (2012) Proc. Natl. Acad. Sci. U.S.A. , vol.109
    • Westfall, P.J.1    Pitera, D.J.2    Lenihan, J.R.3    Eng, D.4    Woolard, F.X.5    Regentin, R.6
  • 60
    • 0035997009 scopus 로고    scopus 로고
    • Extreme pathway analysis of human red blood cell metabolism
    • doi: 10.1016/S0006-3495(02)75210-7
    • Wiback, S. J., and Palsson, B. O. (2002). Extreme pathway analysis of human red blood cell metabolism. Biophys. J. 83, 808-818. doi: 10.1016/S0006-3495(02)75210-7
    • (2002) Biophys. J. , vol.83 , pp. 808-818
    • Wiback, S.J.1    Palsson, B.O.2
  • 61
    • 0034741983 scopus 로고    scopus 로고
    • 13C metabolic flux analysis
    • doi: 10.1006/mben.2001.0187
    • Wiechert, W. (2001). 13C metabolic flux analysis. Metab. Eng. 3, 195-206. doi: 10.1006/mben.2001.0187
    • (2001) Metab. Eng. , vol.3 , pp. 195-206
    • Wiechert, W.1
  • 62
    • 79952193925 scopus 로고    scopus 로고
    • World Health Organization, Available at, [accessed April 14, 2013]
    • World Health Organization (2010). World Malaria Report 2010. WHO. Available at: http://www.who.int/malaria/world_malaria_report_2010/en/index.html [accessed April 14, 2013].
    • (2010) World Malaria Report 2010. WHO
  • 63
    • 79954608615 scopus 로고    scopus 로고
    • The production of artemisinin precursors in tobacco
    • doi: 10.1111/j.1467-7652.2010.00556.x
    • Zhang, Y., Nowak, G., Reed, D. W., and Covello, P. S. (2011). The production of artemisinin precursors in tobacco. Plant Biotechnol. J. 9, 445-454. doi: 10.1111/j.1467-7652.2010.00556.x
    • (2011) Plant Biotechnol. J. , vol.9 , pp. 445-454
    • Zhang, Y.1    Nowak, G.2    Reed, D.W.3    Covello, P.S.4
  • 64
    • 52049090608 scopus 로고    scopus 로고
    • The molecular cloning of artemisinic aldehyde Δ 11(13) reductase and its role in glandular trichome-dependent biosynthesis of artemisinin in Artemisia annua
    • doi: 10.1074/jbc. M803090200
    • Zhang, Y., Teoh, K. H., Reed, D. W., Maes, L., Goossens, A., Olson, D. J. H., et al. (2008). The molecular cloning of artemisinic aldehyde Δ 11(13) reductase and its role in glandular trichome-dependent biosynthesis of artemisinin in Artemisia annua. J. Biol. Chem. 283, 21501-21508. doi: 10.1074/jbc. M803090200
    • (2008) J. Biol. Chem. , vol.283 , pp. 21501-21508
    • Zhang, Y.1    Teoh, K.H.2    Reed, D.W.3    Maes, L.4    Goossens, A.5    Olson, D.J.H.6
  • 65
    • 84875040713 scopus 로고    scopus 로고
    • pH-responsive artemisinin derivatives and lipid nanoparticle formulations inhibit growth of breast cancer cells in vitro and induce down-regulation of HER family members
    • doi: 10.1371/journal.pone.0059086
    • Zhang, Y. J., Gallis, B., Taya, M., Wang, S., Ho, R. J. Y., and Sasaki, T. (2013). pH-responsive artemisinin derivatives and lipid nanoparticle formulations inhibit growth of breast cancer cells in vitro and induce down-regulation of HER family members. PLoS ONE 8:e59086. doi: 10.1371/journal.pone.0059086
    • (2013) PLoS ONE , vol.8
    • Zhang, Y.J.1    Gallis, B.2    Taya, M.3    Wang, S.4    Ho, R.J.Y.5    Sasaki, T.6
  • 66
    • 77953508699 scopus 로고    scopus 로고
    • Mathematical modeling: bridging the gap between concept and realization in synthetic biology
    • doi: 10.1155/2010/541609
    • Zheng, Y., and Sriram, G. (2010). Mathematical modeling: bridging the gap between concept and realization in synthetic biology. J. Biomed. Biotechnol. 2010, 541609. doi: 10.1155/2010/541609
    • (2010) J. Biomed. Biotechnol. , vol.2010 , pp. 541609
    • Zheng, Y.1    Sriram, G.2
  • 67
    • 84865444062 scopus 로고    scopus 로고
    • A concise synthesis of (+)-artemisinin
    • doi: 10.1021/ja3061479
    • Zhu, C., and Cook, S. P. (2012). A concise synthesis of (+)-artemisinin. J. Am. Chem. Soc. 134, 13577-13579. doi: 10.1021/ja3061479
    • (2012) J. Am. Chem. Soc. , vol.134 , pp. 13577-13579
    • Zhu, C.1    Cook, S.P.2


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