메뉴 건너뛰기




Volumn 14, Issue 6, 2012, Pages 687-704

An integrated computational and experimental study for overproducing fatty acids in Escherichia coli

Author keywords

Computational strain design; Fatty acids overproduction; Metabolic flux analysis

Indexed keywords

ACYL-ACP; BIO-PRODUCTION; BIOSYNTHETIC PATHWAY; CATALYTIC PRODUCTION; E. COLI; EXPERIMENTAL STUDIES; FATTY ACID CHAINS; FLUX ANALYSIS; FREE FATTY ACID; GENETIC MANIPULATIONS; HIGHER YIELD; METABOLIC FLUX ANALYSIS; METABOLIC PATHWAYS; MICROBIAL PRODUCTION; PRIORITIZATION; RECOMBINANT STRAINS; THEORETICAL YIELD; THIOESTERASES; WILD TYPES;

EID: 84869027982     PISSN: 10967176     EISSN: 10967184     Source Type: Journal    
DOI: 10.1016/j.ymben.2012.08.008     Document Type: Article
Times cited : (98)

References (68)
  • 1
    • 74149094503 scopus 로고    scopus 로고
    • Engineering the isobutanol biosynthetic pathway in Escherichia coli by comparison of three aldehyde reductase/alcohol dehydrogenase genes
    • Atsumi S., Wu T.Y., Eckl E.M., Hawkins S.D., Buelter T., Liao J.C. Engineering the isobutanol biosynthetic pathway in Escherichia coli by comparison of three aldehyde reductase/alcohol dehydrogenase genes. Appl. Microbiol. Biotechnol. 2010, 85:651-657.
    • (2010) Appl. Microbiol. Biotechnol. , vol.85 , pp. 651-657
    • Atsumi, S.1    Wu, T.Y.2    Eckl, E.M.3    Hawkins, S.D.4    Buelter, T.5    Liao, J.C.6
  • 3
    • 0242487787 scopus 로고    scopus 로고
    • Optknock: a bilevel programming framework for identifying gene knockout strategies for microbial strain optimization
    • Burgard A.P., Pharkya P., Maranas C.D. Optknock: a bilevel programming framework for identifying gene knockout strategies for microbial strain optimization. Biotechnol. Bioeng. 2003, 84:647-657.
    • (2003) Biotechnol. Bioeng. , vol.84 , pp. 647-657
    • Burgard, A.P.1    Pharkya, P.2    Maranas, C.D.3
  • 4
    • 0035157890 scopus 로고    scopus 로고
    • Escherichia coli FadR positively regulates transcription of the fabB fatty acid biosynthetic gene
    • Campbell J.W., Cronan J.E. Escherichia coli FadR positively regulates transcription of the fabB fatty acid biosynthetic gene. J. Bacteriol. 2001, 183:5982-5990.
    • (2001) J. Bacteriol. , vol.183 , pp. 5982-5990
    • Campbell, J.W.1    Cronan, J.E.2
  • 5
    • 80052441741 scopus 로고    scopus 로고
    • Re-examination of metabolic fluxes in Escherichia coli during anaerobic fermentation of glucose using (13)C labeling experiments and 2-dimensional nuclear magnetic resonance (NMR) spectroscopy
    • Choudhary M.K., Yoon J.M., Gonzalez R., Shanks J.V. Re-examination of metabolic fluxes in Escherichia coli during anaerobic fermentation of glucose using (13)C labeling experiments and 2-dimensional nuclear magnetic resonance (NMR) spectroscopy. Biotechnol. Bioprocess Eng. 2011, 16:419-437.
    • (2011) Biotechnol. Bioprocess Eng. , vol.16 , pp. 419-437
    • Choudhary, M.K.1    Yoon, J.M.2    Gonzalez, R.3    Shanks, J.V.4
  • 6
    • 0034666431 scopus 로고    scopus 로고
    • Overproduction of acetyl-CoA carboxylase activity increases the rate of fatty acid biosynthesis in Escherichia coli
    • Davis M.S., Solbiati J., Cronan J.E. Overproduction of acetyl-CoA carboxylase activity increases the rate of fatty acid biosynthesis in Escherichia coli. J. Biol. Chem. 2000, 275:28593-28598.
    • (2000) J. Biol. Chem. , vol.275 , pp. 28593-28598
    • Davis, M.S.1    Solbiati, J.2    Cronan, J.E.3
  • 7
    • 0030087860 scopus 로고    scopus 로고
    • Production of high levels of 8:0 and 10:0 fatty acids in transgenic canola by overexpression of Ch FatB2, a thioesterase cDNA from Cuphea hookeriana
    • Dehesh K., Jones A., Knutzon D.S., Voelker T.A. Production of high levels of 8:0 and 10:0 fatty acids in transgenic canola by overexpression of Ch FatB2, a thioesterase cDNA from Cuphea hookeriana. Plant. J. 1996, 9:167-172.
    • (1996) Plant. J. , vol.9 , pp. 167-172
    • Dehesh, K.1    Jones, A.2    Knutzon, D.S.3    Voelker, T.A.4
  • 8
    • 80051941601 scopus 로고    scopus 로고
    • Engineered reversal of the beta-oxidation cycle for the synthesis of fuels and chemicals
    • Dellomonaco C., Clomburg J.M., Miller E.N., Gonzalez R. Engineered reversal of the beta-oxidation cycle for the synthesis of fuels and chemicals. Nature 2011, 476:355-359.
    • (2011) Nature , vol.476 , pp. 355-359
    • Dellomonaco, C.1    Clomburg, J.M.2    Miller, E.N.3    Gonzalez, R.4
  • 10
    • 0037335931 scopus 로고    scopus 로고
    • Metabolic flux profiling of Escherichia coli mutants in central carbon metabolism using GC-MS
    • Fischer E., Sauer U. Metabolic flux profiling of Escherichia coli mutants in central carbon metabolism using GC-MS. Eur. J. Biochem. 2003, 270:880-891.
    • (2003) Eur. J. Biochem. , vol.270 , pp. 880-891
    • Fischer, E.1    Sauer, U.2
  • 11
    • 0344443759 scopus 로고    scopus 로고
    • A novel metabolic cycle catalyzes glucose oxidation and anaplerosis in hungry Escherichia coli
    • Fischer E., Sauer U. A novel metabolic cycle catalyzes glucose oxidation and anaplerosis in hungry Escherichia coli. J. Biol. Chem. 2003, 278:46446-46451.
    • (2003) J. Biol. Chem. , vol.278 , pp. 46446-46451
    • Fischer, E.1    Sauer, U.2
  • 12
    • 1642538406 scopus 로고    scopus 로고
    • High-throughput metabolic flux analysis based on gas chromatography-mass spectrometry derived C-13 constraints
    • Fischer E., Zamboni N., Sauer U. High-throughput metabolic flux analysis based on gas chromatography-mass spectrometry derived C-13 constraints. Anal. Biochem. 2004, 325:308-316.
    • (2004) Anal. Biochem. , vol.325 , pp. 308-316
    • Fischer, E.1    Zamboni, N.2    Sauer, U.3
  • 13
    • 63549102137 scopus 로고    scopus 로고
    • A review of the current state of biodiesel production using enzymatic transesterification
    • Fjerbaek L., Christensen K.V., Norddahl B. A review of the current state of biodiesel production using enzymatic transesterification. Biotechnol. Bioeng. 2009, 102:1298-1315.
    • (2009) Biotechnol. Bioeng. , vol.102 , pp. 1298-1315
    • Fjerbaek, L.1    Christensen, K.V.2    Norddahl, B.3
  • 15
    • 35748970454 scopus 로고    scopus 로고
    • Regulation of fatty acid metabolism in bacteria
    • Fujita Y., Matsuoka H., Hirooka K. Regulation of fatty acid metabolism in bacteria. Mol. Microbiol. 2007, 66:829-839.
    • (2007) Mol. Microbiol. , vol.66 , pp. 829-839
    • Fujita, Y.1    Matsuoka, H.2    Hirooka, K.3
  • 17
    • 84867013779 scopus 로고    scopus 로고
    • Metabolic engineering of Escherichia coli for 1-butanol biosynthesis through the inverted aerobic fatty acid beta-oxidation pathway
    • Gulevich A.Y., Skorokhodova A.Y., Sukhozhenko A.V., Shakulov R.S., Debabov V.G. Metabolic engineering of Escherichia coli for 1-butanol biosynthesis through the inverted aerobic fatty acid beta-oxidation pathway. Biotechnol. Lett 2011.
    • (2011) Biotechnol. Lett
    • Gulevich, A.Y.1    Skorokhodova, A.Y.2    Sukhozhenko, A.V.3    Shakulov, R.S.4    Debabov, V.G.5
  • 18
    • 78650570829 scopus 로고    scopus 로고
    • Application and engineering of fatty acid biosynthesis in Escherichia coli for advanced fuels and chemicals
    • Handke P., Lynch S.A., Gill R.T. Application and engineering of fatty acid biosynthesis in Escherichia coli for advanced fuels and chemicals. Metab. Eng. 2011, 13:28-37.
    • (2011) Metab. Eng. , vol.13 , pp. 28-37
    • Handke, P.1    Lynch, S.A.2    Gill, R.T.3
  • 19
    • 17544367317 scopus 로고    scopus 로고
    • Inhibition of beta-ketoacyl-acyl carrier protein synthase III (FabH) by acyl-acyl carrier protein in Escherichia coli
    • Heath R.J., Rock C.O. Inhibition of beta-ketoacyl-acyl carrier protein synthase III (FabH) by acyl-acyl carrier protein in Escherichia coli. J. Biol. Chem. 1996, 271:10996-11000.
    • (1996) J. Biol. Chem. , vol.271 , pp. 10996-11000
    • Heath, R.J.1    Rock, C.O.2
  • 20
    • 0030033704 scopus 로고    scopus 로고
    • Regulation of fatty acid elongation and initiation by acyl-acyl carrier protein in Escherichia coli
    • Heath R.J., Rock C.O. Regulation of fatty acid elongation and initiation by acyl-acyl carrier protein in Escherichia coli. J. Biol. Chem. 1996, 271:1833-1836.
    • (1996) J. Biol. Chem. , vol.271 , pp. 1833-1836
    • Heath, R.J.1    Rock, C.O.2
  • 21
    • 1642576086 scopus 로고    scopus 로고
    • Expression of two Escherichia coli acetyl-CoA carboxylase subunits is autoregulated
    • James E.S., Cronan J.E. Expression of two Escherichia coli acetyl-CoA carboxylase subunits is autoregulated. J. Biol. Chem. 2004, 279:2520-2527.
    • (2004) J. Biol. Chem. , vol.279 , pp. 2520-2527
    • James, E.S.1    Cronan, J.E.2
  • 22
    • 81155158878 scopus 로고    scopus 로고
    • Phylogenetic and experimental characterization of an acyl-ACP thioesterase family reveals significant diversity in enzymatic specificity and activity
    • 44
    • Jing F., Cantu D.C., Tvaruzkova J., Chipman J.P., Nikolau B.J., Yandeau-Nelson M.D., Reilly P.J. Phylogenetic and experimental characterization of an acyl-ACP thioesterase family reveals significant diversity in enzymatic specificity and activity. Bmc Biochem. 2011, 12. , 44.
    • (2011) Bmc Biochem. , pp. 12
    • Jing, F.1    Cantu, D.C.2    Tvaruzkova, J.3    Chipman, J.P.4    Nikolau, B.J.5    Yandeau-Nelson, M.D.6    Reilly, P.J.7
  • 24
    • 34249765651 scopus 로고
    • NMR View-A computer-program for the visualization and analysis of nmr data
    • Johnson B.A., Blevins R.A. NMR View-A computer-program for the visualization and analysis of nmr data. J. Biomolecular NMR 1994, 4:603-614.
    • (1994) J. Biomolecular NMR , vol.4 , pp. 603-614
    • Johnson, B.A.1    Blevins, R.A.2
  • 25
    • 77951552860 scopus 로고    scopus 로고
    • OptORF: optimal metabolic and regulatory perturbations for metabolic engineering of microbial strains. BMC
    • Kim J., Reed J.L. OptORF: optimal metabolic and regulatory perturbations for metabolic engineering of microbial strains. BMC. Syst. Biol. 2010, 4:53.
    • (2010) Syst. Biol. , vol.4 , pp. 53
    • Kim, J.1    Reed, J.L.2
  • 26
    • 20444420179 scopus 로고    scopus 로고
    • Strain improvement by metabolic engineering: lysine production as a case study for systems biology
    • Koffas M., Stephanopoulos G. Strain improvement by metabolic engineering: lysine production as a case study for systems biology. Curr. Opin. Biotechnol. 2005, 16:361-366.
    • (2005) Curr. Opin. Biotechnol. , vol.16 , pp. 361-366
    • Koffas, M.1    Stephanopoulos, G.2
  • 27
    • 79958747820 scopus 로고    scopus 로고
    • Metabolic engineering of cyanobacteria for 1-butanol production from carbon dioxide
    • Lan E.I., Liao J.C. Metabolic engineering of cyanobacteria for 1-butanol production from carbon dioxide. Metab. Eng. 2011, 13:353-363.
    • (2011) Metab. Eng. , vol.13 , pp. 353-363
    • Lan, E.I.1    Liao, J.C.2
  • 28
    • 77953044867 scopus 로고    scopus 로고
    • A process for microbial hydrocarbon synthesis: overproduction of fatty acids in Escherichia coli and catalytic conversion to alkanes
    • Lennen R.M., Braden D.J., West R.A., Dumesic J.A., Pfleger B.F. A process for microbial hydrocarbon synthesis: overproduction of fatty acids in Escherichia coli and catalytic conversion to alkanes. Biotechnol. Bioeng. 2010, 106:193-202.
    • (2010) Biotechnol. Bioeng. , vol.106 , pp. 193-202
    • Lennen, R.M.1    Braden, D.J.2    West, R.A.3    Dumesic, J.A.4    Pfleger, B.F.5
  • 29
    • 84862166207 scopus 로고    scopus 로고
    • Effect of acetate formation pathway and long chain fatty acid CoA-ligase on the free fatty acid production in E. coli expressing acy-ACP thioesterase from Ricinus communis
    • Li M., Zhang X., Agrawal A., San K.-Y. Effect of acetate formation pathway and long chain fatty acid CoA-ligase on the free fatty acid production in E. coli expressing acy-ACP thioesterase from Ricinus communis. Metab. Eng 2012, 14(4):380-387.
    • (2012) Metab. Eng , vol.14 , Issue.4 , pp. 380-387
    • Li, M.1    Zhang, X.2    Agrawal, A.3    San, K.-Y.4
  • 30
    • 77953022686 scopus 로고    scopus 로고
    • Quantitative analysis and engineering of fatty acid biosynthesis in E. coli
    • Liu T., Vora H., Khosla C. Quantitative analysis and engineering of fatty acid biosynthesis in E. coli. Metab. Eng. 2010, 12:378-386.
    • (2010) Metab. Eng. , vol.12 , pp. 378-386
    • Liu, T.1    Vora, H.2    Khosla, C.3
  • 31
    • 77953022686 scopus 로고    scopus 로고
    • Quantitative analysis and engineering of fatty acid biosynthesis in E. coli
    • Liu T., Vora H., Khosla C. Quantitative analysis and engineering of fatty acid biosynthesis in E. coli. Metab. Eng. 2010, 12:378-386.
    • (2010) Metab. Eng. , vol.12 , pp. 378-386
    • Liu, T.1    Vora, H.2    Khosla, C.3
  • 32
    • 57049105699 scopus 로고    scopus 로고
    • Overproduction of free fatty acids in E. coli: implications for biodiesel production
    • Lu X., Vora H., Khosla C. Overproduction of free fatty acids in E. coli: implications for biodiesel production. Metab. Eng. 2008, 10:333-339.
    • (2008) Metab. Eng. , vol.10 , pp. 333-339
    • Lu, X.1    Vora, H.2    Khosla, C.3
  • 34
    • 0036863098 scopus 로고    scopus 로고
    • Mechanistic diversity and regulation of Type II fatty acid synthesis
    • Marrakchi H., Zhang Y.M., Rock C.O. Mechanistic diversity and regulation of Type II fatty acid synthesis. Biochem. Soc. Trans. 2002, 30:1050-1055.
    • (2002) Biochem. Soc. Trans. , vol.30 , pp. 1050-1055
    • Marrakchi, H.1    Zhang, Y.M.2    Rock, C.O.3
  • 35
    • 83055180451 scopus 로고    scopus 로고
    • Engineering Escherichia coli for biodiesel production utilizing a bacterial fatty acid methyltransferase
    • Nawabi P., Bauer S., Kyrpides N., Lykidis A. Engineering Escherichia coli for biodiesel production utilizing a bacterial fatty acid methyltransferase. Appl. Environ. Microbiol. 2011, 77:8052-8061.
    • (2011) Appl. Environ. Microbiol. , vol.77 , pp. 8052-8061
    • Nawabi, P.1    Bauer, S.2    Kyrpides, N.3    Lykidis, A.4
  • 36
    • 43549122821 scopus 로고    scopus 로고
    • Platform biochemicals for a biorenewable chemical industry
    • Nikolau B.J., Perera M.A.D.N., Brachova L., Shanks B. Platform biochemicals for a biorenewable chemical industry. Plant J. 2008, 54:536-545.
    • (2008) Plant J. , vol.54 , pp. 536-545
    • Nikolau, B.J.1    Perera, M.A.D.N.2    Brachova, L.3    Shanks, B.4
  • 37
    • 30044437327 scopus 로고    scopus 로고
    • Evolutionary programming as a platform for in silico metabolic engineering
    • Patil K.R., Rocha I., Forster J., Nielsen J. Evolutionary programming as a platform for in silico metabolic engineering. BMC Bioinformatics 2005, 6:308.
    • (2005) BMC Bioinformatics , vol.6 , pp. 308
    • Patil, K.R.1    Rocha, I.2    Forster, J.3    Nielsen, J.4
  • 38
    • 79952103915 scopus 로고    scopus 로고
    • The expression of 1-deoxy-D-xylulose synthase and geraniol-10-hydroxylase or anthranilate synthase increases terpenoid indole alkaloid accumulation in Catharanthus roseus hairy roots
    • Peebles C.A., Sander G.W., Hughes E.H., Peacock R., Shanks J.V., San K.Y. The expression of 1-deoxy-D-xylulose synthase and geraniol-10-hydroxylase or anthranilate synthase increases terpenoid indole alkaloid accumulation in Catharanthus roseus hairy roots. Metab. Eng. 2010, 13:234-240.
    • (2010) Metab. Eng. , vol.13 , pp. 234-240
    • Peebles, C.A.1    Sander, G.W.2    Hughes, E.H.3    Peacock, R.4    Shanks, J.V.5    San, K.Y.6
  • 39
    • 8744224466 scopus 로고    scopus 로고
    • OptStrain: a computational framework for redesign of microbial production systems
    • Pharkya P., Burgard A.P., Maranas C.D. OptStrain: a computational framework for redesign of microbial production systems. Genome. Res. 2004, 14:2367-2376.
    • (2004) Genome. Res. , vol.14 , pp. 2367-2376
    • Pharkya, P.1    Burgard, A.P.2    Maranas, C.D.3
  • 40
    • 29544436058 scopus 로고    scopus 로고
    • An optimization framework for identifying reaction activation/inhibition or elimination candidates for overproduction in microbial systems
    • Pharkya P., Maranas C.D. An optimization framework for identifying reaction activation/inhibition or elimination candidates for overproduction in microbial systems. Metab. Eng. 2006, 8:1-13.
    • (2006) Metab. Eng. , vol.8 , pp. 1-13
    • Pharkya, P.1    Maranas, C.D.2
  • 42
    • 77954590959 scopus 로고    scopus 로고
    • OptForce: an optimization procedure for identifying all genetic manipulations leading to targeted overproductions
    • Ranganathan S., Suthers P.F., Maranas C.D. OptForce: an optimization procedure for identifying all genetic manipulations leading to targeted overproductions. PLoS Comput. Biol. 2010, 6:e1000744.
    • (2010) PLoS Comput. Biol. , vol.6
    • Ranganathan, S.1    Suthers, P.F.2    Maranas, C.D.3
  • 43
    • 84883552990 scopus 로고    scopus 로고
    • Bacteria And Method For Synthesizing Fatty Acids
    • WO/2011/116279 , USA
    • San, K.-Y., Li, M., Zhang, X., Bacteria And Method For Synthesizing Fatty Acids. 2011. Vol. WO/2011/116279 , USA.
    • (2011) , vol.1
    • San, K.-Y.1    Li, M.2    Zhang, X.3
  • 44
    • 0032753923 scopus 로고    scopus 로고
    • Metabolic flux ratio analysis of genetic and environmental modulations of Escherichia coli central carbon metabolism
    • Sauer U., Lasko D.R., Fiaux J., Hochuli M., Glaser R., Szyperski T., Wuthrich K., Bailey J.E. Metabolic flux ratio analysis of genetic and environmental modulations of Escherichia coli central carbon metabolism. J. Bacteriol. 1999, 181:6679-6688.
    • (1999) J. Bacteriol. , vol.181 , pp. 6679-6688
    • Sauer, U.1    Lasko, D.R.2    Fiaux, J.3    Hochuli, M.4    Glaser, R.5    Szyperski, T.6    Wuthrich, K.7    Bailey, J.E.8
  • 45
    • 4544275674 scopus 로고    scopus 로고
    • Microbial type I fatty acid synthases (FAS): major players in a network of cellular FAS systems
    • Schweizer E., Hofmann J. Microbial type I fatty acid synthases (FAS): major players in a network of cellular FAS systems. Microbiol. Mol. Biol. Rev. 2004, 68:501-517.
    • (2004) Microbiol. Mol. Biol. Rev. , vol.68 , pp. 501-517
    • Schweizer, E.1    Hofmann, J.2
  • 46
    • 0037069467 scopus 로고    scopus 로고
    • Analysis of optimality in natural and perturbed metabolic networks
    • Segre D., Vitkup D., Church G.M. Analysis of optimality in natural and perturbed metabolic networks. Proc. Natl. Acad. Sci. USA 2002, 99:15112-15117.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 15112-15117
    • Segre, D.1    Vitkup, D.2    Church, G.M.3
  • 47
    • 54349114978 scopus 로고    scopus 로고
    • Metabolic engineering of Escherichia coli for 1-butanol and 1-propanol production via the keto-acid pathways
    • Shen C.R., Liao J.C. Metabolic engineering of Escherichia coli for 1-butanol and 1-propanol production via the keto-acid pathways. Metab. Eng. 2008, 10:312-320.
    • (2008) Metab. Eng. , vol.10 , pp. 312-320
    • Shen, C.R.1    Liao, J.C.2
  • 48
    • 1542265814 scopus 로고    scopus 로고
    • Metabolic flux analysis of pykF gene knockout Escherichia coli based on C-13-labeling experiments together with measurements of enzyme activities and intracellular metabolite concentrations
    • Siddiquee K.A., Arauzo-Bravo M.J., Shimizu K. Metabolic flux analysis of pykF gene knockout Escherichia coli based on C-13-labeling experiments together with measurements of enzyme activities and intracellular metabolite concentrations. Appl. Microbiol. Biotechnol. 2004, 63:407-417.
    • (2004) Appl. Microbiol. Biotechnol. , vol.63 , pp. 407-417
    • Siddiquee, K.A.1    Arauzo-Bravo, M.J.2    Shimizu, K.3
  • 49
    • 12244298643 scopus 로고    scopus 로고
    • Quantification of compartmented metabolic fluxes in developing soybean embryos by employing Biosynthetic ally directed fractional C-13 labeling, C-13, H-1 two-dimensional nuclear magnetic resonance, and comprehensive isotopomer balancing
    • Sriram G., Fulton D.B., Iyer V.V., Peterson J.M., Zhou R.L., Westgate M.E., Spalding M.H., Shanks J.V. Quantification of compartmented metabolic fluxes in developing soybean embryos by employing Biosynthetic ally directed fractional C-13 labeling, C-13, H-1 two-dimensional nuclear magnetic resonance, and comprehensive isotopomer balancing. Plant Physiol. 2004, 136:3043-3057.
    • (2004) Plant Physiol. , vol.136 , pp. 3043-3057
    • Sriram, G.1    Fulton, D.B.2    Iyer, V.V.3    Peterson, J.M.4    Zhou, R.L.5    Westgate, M.E.6    Spalding, M.H.7    Shanks, J.V.8
  • 51
    • 0032600888 scopus 로고    scopus 로고
    • Metabolic fluxes and metabolic engineering
    • Stephanopoulos G. Metabolic fluxes and metabolic engineering. Metab. Eng. 1999, 1:1-11.
    • (1999) Metab. Eng. , vol.1 , pp. 1-11
    • Stephanopoulos, G.1
  • 52
    • 33846950348 scopus 로고    scopus 로고
    • Challenges in engineering microbes for biofuels production
    • Stephanopoulos G. Challenges in engineering microbes for biofuels production. Science 2007, 315:801-804.
    • (2007) Science , vol.315 , pp. 801-804
    • Stephanopoulos, G.1
  • 53
    • 0031783528 scopus 로고    scopus 로고
    • Overproduction of a functional fatty acid biosynthetic enzyme blocks fatty acid synthesis in Escherichia coli
    • Subrahmanyam S., Cronan J.E. Overproduction of a functional fatty acid biosynthetic enzyme blocks fatty acid synthesis in Escherichia coli. J. Bacteriol. 1998, 180:4596-4602.
    • (1998) J. Bacteriol. , vol.180 , pp. 4596-4602
    • Subrahmanyam, S.1    Cronan, J.E.2
  • 54
    • 69249102097 scopus 로고    scopus 로고
    • Genome-scale gene/reaction essentiality and synthetic lethality analysis
    • Suthers P.F., Zomorrodi A., Maranas C.D. Genome-scale gene/reaction essentiality and synthetic lethality analysis. Mol. Syst. Biol. 2009, 5:301.
    • (2009) Mol. Syst. Biol. , vol.5 , pp. 301
    • Suthers, P.F.1    Zomorrodi, A.2    Maranas, C.D.3
  • 55
    • 0029146299 scopus 로고
    • Biosynthetically directed fractional 13C-labeling of proteinogenic amino acids. An efficient analytical tool to investigate intermediary metabolism
    • Szyperski T. Biosynthetically directed fractional 13C-labeling of proteinogenic amino acids. An efficient analytical tool to investigate intermediary metabolism. Eur. J. Biochem. 1995, 232:433-448.
    • (1995) Eur. J. Biochem. , vol.232 , pp. 433-448
    • Szyperski, T.1
  • 56
    • 77949495880 scopus 로고    scopus 로고
    • Predicting metabolic engineering knockout strategies for chemical production: accounting for competing pathways
    • Tepper N., Shlomi T. Predicting metabolic engineering knockout strategies for chemical production: accounting for competing pathways. Bioinformatics 2010, 26:536-543.
    • (2010) Bioinformatics , vol.26 , pp. 536-543
    • Tepper, N.1    Shlomi, T.2
  • 57
    • 77956969126 scopus 로고    scopus 로고
    • (13)C-metabolic flux analysis for batch culture of escherichia coli and its pyk and pgi gene knockout mutants based on mass isotopomer distribution of intracellular metabolites
    • Toya Y., Ishii N., Nakahigashi K., Hirasawa T., Soga T., Tomita M., Shimizu K. (13)C-metabolic flux analysis for batch culture of escherichia coli and its pyk and pgi gene knockout mutants based on mass isotopomer distribution of intracellular metabolites. Biotechnol. Prog. 2010, 26:975-992.
    • (2010) Biotechnol. Prog. , vol.26 , pp. 975-992
    • Toya, Y.1    Ishii, N.2    Nakahigashi, K.3    Hirasawa, T.4    Soga, T.5    Tomita, M.6    Shimizu, K.7
  • 58
    • 42149108145 scopus 로고    scopus 로고
    • Biodiesel production-current state of the art and challenges
    • Vasudevan P.T., Briggs M. Biodiesel production-current state of the art and challenges. J. Ind. Microbiol. Biotechnol. 2008, 35:421-430.
    • (2008) J. Ind. Microbiol. Biotechnol. , vol.35 , pp. 421-430
    • Vasudevan, P.T.1    Briggs, M.2
  • 59
    • 0020709318 scopus 로고
    • Production of fatty alcohols from fatty-acids
    • Voeste T., Buchold H. Production of fatty alcohols from fatty-acids. J. Am. Oil Chem. Soc. 1984, 61:350-352.
    • (1984) J. Am. Oil Chem. Soc. , vol.61 , pp. 350-352
    • Voeste, T.1    Buchold, H.2
  • 60
    • 22244466130 scopus 로고    scopus 로고
    • Rock The structural biology of type II fatty acid biosynthesis
    • White S.W., Zheng J., Zhang Y.M., Rock The structural biology of type II fatty acid biosynthesis. Annu. Rev. Biochem. 2005, 74:791-831.
    • (2005) Annu. Rev. Biochem. , vol.74 , pp. 791-831
    • White, S.W.1    Zheng, J.2    Zhang, Y.M.3
  • 62
    • 80052021573 scopus 로고    scopus 로고
    • Genome-scale metabolic network modeling results in minimal interventions that cooperatively force carbon flux towards malonyl-CoA
    • Xu P., Ranganathan S., Fowler Z.L., Maranas C.D., Koffas M.A. Genome-scale metabolic network modeling results in minimal interventions that cooperatively force carbon flux towards malonyl-CoA. Metab. Eng. 2011, 13:578-587.
    • (2011) Metab. Eng. , vol.13 , pp. 578-587
    • Xu, P.1    Ranganathan, S.2    Fowler, Z.L.3    Maranas, C.D.4    Koffas, M.A.5
  • 63
    • 84859904363 scopus 로고    scopus 로고
    • Kinetic modeling of free fatty acid production in Escherichia coli based on continuous cultivation of a plasmid free strain
    • Youngquist J.T., Lennen R.M., Ranatunga D.R., Bothfeld W.H., Ii W.D.M., Pfleger B.F. Kinetic modeling of free fatty acid production in Escherichia coli based on continuous cultivation of a plasmid free strain. Biotechnol. Bioeng. 2012, 109:1518-1527.
    • (2012) Biotechnol. Bioeng. , vol.109 , pp. 1518-1527
    • Youngquist, J.T.1    Lennen, R.M.2    Ranatunga, D.R.3    Bothfeld, W.H.4    Ii, W.D.M.5    Pfleger, B.F.6
  • 64
    • 81755185882 scopus 로고    scopus 로고
    • In vitro reconstitution and steady-state analysis of the fatty acid synthase from Escherichia coli
    • Yu X., Liu T., Zhu F., Khosla C. In vitro reconstitution and steady-state analysis of the fatty acid synthase from Escherichia coli. Proc. Natl. Acad. Sci. U. S. A. 2011, 108:18643-18648.
    • (2011) Proc. Natl. Acad. Sci. U. S. A. , vol.108 , pp. 18643-18648
    • Yu, X.1    Liu, T.2    Zhu, F.3    Khosla, C.4
  • 65
    • 84859633048 scopus 로고    scopus 로고
    • Design of a dynamic sensor-regulator system for production of chemicals and fuels derived from fatty acids
    • Zhang F., Carothers J.M., Keasling J.D. Design of a dynamic sensor-regulator system for production of chemicals and fuels derived from fatty acids. Nat. Biotech. 2012, 30:354-359.
    • (2012) Nat. Biotech. , vol.30 , pp. 354-359
    • Zhang, F.1    Carothers, J.M.2    Keasling, J.D.3
  • 66
    • 0028953195 scopus 로고
    • Metabolic engineering of a pentose metabolism pathway in ethanologenic Zymomonas mobilis
    • Zhang M., Eddy C., Deanda K., Finkelstein M., Picataggio S. Metabolic engineering of a pentose metabolism pathway in ethanologenic Zymomonas mobilis. Science 1995, 267:240-243.
    • (1995) Science , vol.267 , pp. 240-243
    • Zhang, M.1    Eddy, C.2    Deanda, K.3    Finkelstein, M.4    Picataggio, S.5
  • 67
    • 84856573077 scopus 로고    scopus 로고
    • Improving fatty acid production in escherichia coli through the overexpression of malonyl coA-acyl carrier protein transacylase
    • Zhang X., Agrawal A., San K.-Y. Improving fatty acid production in escherichia coli through the overexpression of malonyl coA-acyl carrier protein transacylase. Biotechnol. Prog. 2012, 28:60-65.
    • (2012) Biotechnol. Prog. , vol.28 , pp. 60-65
    • Zhang, X.1    Agrawal, A.2    San, K.-Y.3
  • 68
    • 80555149222 scopus 로고    scopus 로고
    • Efficient free fatty acid production in Escherichia coli using plant acyl-ACP thioesterases
    • Zhang X., Li M., Agrawal A., San K.-Y. Efficient free fatty acid production in Escherichia coli using plant acyl-ACP thioesterases. Metab. Eng. 2011, 13:713-722.
    • (2011) Metab. Eng. , vol.13 , pp. 713-722
    • Zhang, X.1    Li, M.2    Agrawal, A.3    San, K.-Y.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.