Expa: A program for calculating extreme pathways in biochemical reaction networks

Bioinformatics

Volumn 21, Issue 8, 2005, Pages 1739-1740

  Bell, Steven L ^a   Palsson, Bernhard Ø ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; CHEMICAL REACTION; COMPUTER PROGRAM; DEVICE; PRIORITY JOURNAL; STEADY STATE; STOICHIOMETRY;

EID: 17544366029     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/bti228     Document Type: Article

References (5)

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2. Papin,J.A., Price,N.D., Wiback,S.J., Fell,D.A. and Palsson,B.Ø. (2003) Metabolic pathways in the post-genome era. Trends Biochem. Sci., 28, 250-258.
3. Press,W.H., Teukolsky,S.A., Vetterling,W.T. and Flannery,B.P. (1992) Numerical Recipes in C, The Art of Scientific Computing, 2nd edn., Cambridge University Press.
4. Samatova,F.N., Geist,A., Ostrouchov,G. and Melechko,A. (2002) Parallel out-of-core algorithm for genome-scale enumeration of metabolic systemic pathways. In Proceedings of the First IEEE Workshop on High performance Computational Biolology (HICOMB2002), Ft. Lauderdale, FL, (http://www.hicomb.org/hicomb2003/papers/HICOMB2-6.pdf).
5. Schilling,C.H., Letscher,D. and Palsson,B.Ø. (2000) Theory for the systemic definition of metabolic pathways and their use in interpreting metabolic function from a pathway-oriented perspective. J. Theoret. Biol., 203, 249-283.