KOTOBUKI-1 apparatus for cryogenic coherent X-ray diffraction imaging

Review of Scientific Instruments

Volumn 84, Issue 9, 2013, Pages

  Nakasako, Masayoshi ^a,b   Takayama, Yuki ^a,b   Oroguchi, Tomotaka ^a,b   Sekiguchi, Yuki ^a,b   Kobayashi, Amane ^a,b   Shirahama, Keiya ^a   Yamamoto, Masaki ^b   Hikima, Takaaki ^b   Yonekura, Koji ^b   Maki Yonekura, Saori ^b   Kohmura, Yoshiki ^b   Inubushi, Yuichi ^b   Takahashi, Yukio ^b,c   Suzuki, Akihiro ^b,c   Matsunaga, Sachihiro ^d   Inui, Yayoi ^d   Tono, Kensuke ^e   Kameshima, Takashi ^e   Joti, Yasumasa ^e   Hoshi, Takahiko ^f  

^a KEIO UNIVERSITY   (Japan)

^b RIKEN SPring 8 Center   (Japan)

^c OSAKA UNIVERSITY   (Japan)

^d TOKYO UNIVERSITY OF SCIENCE   (Japan)

^e JAPAN SYNCHROTRON RADIATION RESEARCH INSTITUTE   (Japan)

^f Kohzu Precision Co Ltd   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL SCIENCE; COHERENT X-RAY DIFFRACTION IMAGING; CRYOGENIC TEMPERATURES; EVAPORATION COOLING; EXPERIMENTAL APPARATUS; EXPERIMENTAL ENVIRONMENT; NITROGEN STORAGES; X-RAY FREE ELECTRON LASERS;

BIOLOGICAL MATERIALS; CRYOGENICS; CRYSTALLINE MATERIALS; DATA ACQUISITION; FREE ELECTRON LASERS; HYDRATION; LIQUID NITROGEN;

X RAY DIFFRACTION;

ARTICLE; EQUIPMENT; FREEZING; METHODOLOGY; X RAY DIFFRACTION; DEVICES; PROCEDURES;

FREEZING; X-RAY DIFFRACTION;

EID: 84885152332     PISSN: 00346748     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.4822123     Document Type: Article

References (62)

1. J. Miao, D. Sayre, and H. N. Chapman, J. Opt. Soc. Am. A 15, 1662 (1998). 10.1364/JOSAA.15.001662
2. J. Miao, P. Charalambous, J. Kirz, and D. Sayre, Nature (London) 400, 342 (1999). 10.1038/22498 (Pubitemid 29344194)
3. J. Miao, T. Ishikawa, Q. Shen, and T. Earnest, Annu. Rev. Phys. Chem. 59, 387 (2008). 10.1146/annurev.physchem.59.032607.093642 (Pubitemid 351703392)
4. J. Miao, T. Ishikawa, E. H. Anderson, and K. O. Hodgson, Phys. Rev. B 67, 174104 (2003). 10.1103/PhysRevB.67.174104
5. J. R. Fienup, Appl. Opt. 21, 2758 (1982). 10.1364/AO.21.002758
6. I. K. Robinson, I. A. Vartanyants, G. J. Williams, M. A. Pfeifer, and J. A. Pitney, Phys. Rev. Lett. 87, 195505 (2001). 10.1103/PhysRevLett.87.195505
7. J. Miao, T. Ishikawa, E. H. Johnson, B. Lai, and K. O. Hodgson, Phys. Rev. Lett. 89, 088303 (2002). 10.1103/PhysRevLett.89.088303
8. J. Miao, K. O. Hodgson, T. Ishikawa, C. A. Larabell, M. A. LeGros, and Y. Nishino, Proc. Natl. Acad. Sci. U.S.A. 100, 110 (2003). 10.1073/pnas.232691299 (Pubitemid 36078038)
9. J. Miao, Y. Nishino, Y. Kohmura, B. Johnson, C. Song, S. H. Risbud, and T. Ishikawa, Phys. Rev. Lett. 95, 085503 (2005). 10.1103/PhysRevLett.95.085503 (Pubitemid 41505941)
10. M. A. Pfeifer, G. J. Williams, I. A. Vartanyants, R. Harder, and I. K. Robinson, Nature (London) 442, 63 (2006). 10.1038/nature04867 (Pubitemid 44064208)
11. C. Song, H. Jiang, A. Mancuso, B. Amirbekian, L. Peng, R. Sun, S. S. Shah, Z. H. Zhou, T. Ishikawa, and J. Miao, Phys. Rev. Lett. 101, 158101 (2008). 10.1103/PhysRevLett.101.158101
12. I. K. Robinson and R. Harder, Nature Mater. 8, 291 (2009). 10.1038/nmat2400
13. Y. Nishino, Y. Takahashi, N. Imamoto, T. Ishikawa, and K. Maeshima, Phys. Rev. Lett. 102, 018101 (2009). 10.1103/PhysRevLett.102.018101
14. H. Jiang, C. Song, C.-C. Chen, R. Xu, K. S. Raines, B. P. Fahimian, C.-H. Lu, T.-K. Lee, A. Nakashima, J. Urano, T. Ishikawa, F. Tamanoi, and J. Miao, Proc. Natl. Acad. Sci. U.S.A. 107, 11234 (2010). 10.1073/pnas.1000156107
15. Y. Takahashi, N. Zettsu, Y. Nishino, R. Tsutsumi, E. Matsubara, T. Ishikawa, and K. Yamauchi, Nano Lett. 10, 1922 (2010). 10.1021/nl100891n
16. M. C. Newton, S. J. Leake, R. Harder, and I. K. Robinson, Nature Mater. 9, 120 (2010). 10.1038/nmat2607
17. D. Nam, J. Park, M. Gallagher-Jones, S. Kim, S.-N. Kim, Y. Kohmura, H. Naitow, N. Kunishima, T. Yoshida, T. Ishikawa, and C. Song, Phys. Rev. Lett. 110, 098103 (2013). 10.1103/PhysRevLett.110.098103
18. J. Miao, R. L. Sandberg, and C. Song, IEEE J. Sel. Top. Q. 18, 399 (2012). 10.1109/JSTQE.2011.2157306
19. M. Nakasako, Philos. Trans. R. Soc. London, Ser. B 359, 1191 (2004). 10.1098/rstb.2004.1498 (Pubitemid 39123211)
20. E. O'Toole, G. Wray, J. Kremer, and J. R. McIntosh, J. Struct. Biol. 110, 55 (1993). 10.1006/jsbi.1993.1004
21. N. Shimizu, K. Hirata, K. Hasegawa, G. Ueno, and M. Yamamoto, J. Synchrotron Radiat. 14, 4 (2007). 10.1107/S0909049506049296 (Pubitemid 46058901)
22. J. Dubochet, M. Adrian, J.-J. Chang, J.-C. Homo, J. Lepault, A. W. McDowall, and P. Schultz, Q. Rev. Biophys. 21, 129 (1988). 10.1017/ S0033583500004297
23. B. E. Bammes, J. Jakana, M. F. Schmid, and W. Chiu, J. Struct. Biol. 169, 331 (2010). 10.1016/j.jsb.2009.11.001
24. R. B. G. Ravelli and E. F. Garman, Curr. Opin. Struct. Biol. 16, 624 (2006). 10.1016/j.sbi.2006.08.001 (Pubitemid 44472608)
25. G. Schneider, Ultramicroscopy 75, 85 (1998). 10.1016/S0304-3991(98)00054- 0 (Pubitemid 28529694)
26. J. Maser, A. Osanna, Y. Wang, C. Jacobsen, J. Kirz, S. Spector, B. Winn, and D. Tennant, J. Microsc. 197, 68 (2000). 10.1046/j.1365-2818.2000.00630.x (Pubitemid 30070468)
27. T. Beetz, M. R. Howells, C. Jacobsen, C.-C. Kao, J. Kirz, E. Lima, T. O. Mentes, H. Miaoa, C. Sanchez-Hanke, D. Sayre, and D. Shapiro, Nucl. Instrum. Methods Phys. Res. A 545, 459 (2005). 10.1016/j.nima.2004.12.040 (Pubitemid 40710010)
28. X. Huang, J. Nelson, J. Kirz, E. Lima, S. Marchesini, H. Miao, A. M. Neiman, D. Shapiro, J. Steinbrener, A. Stewart, J. J. Turner, and C. Jacobsen, Phys. Rev. Lett. 103, 198101 (2009). 10.1103/PhysRevLett.103.198101
29. T.-Y. Teng, J. Appl. Crystallogr. 23, 387 (1990). 10.1107/ S0021889890005568
30. E. Lima, L. Wiegart, P. Pernot, M. Howells, J. Timmins, F. Zontone, and A. Madsen, Phys. Rev. Lett. 103, 198102 (2009). 10.1103/PhysRevLett.103.198102
31. E. Lima, A. Diaz, M. Guizar-sicairos, S. Gorelick, P. Pernot, T. Schleier, and A. Menzel, J. Microsc. 249, 1 (2013). 10.1111/j.1365-2818.2012. 03682.x
32. M. Born and E. Wolf, Principles of Optics, 7th (expanded) ed. (Cambridge University Press, Cambridge, 1999).
33. G. Martínez-Criado, R. Steinmann, B. Alén, A. Labrador, D. Fuster, J. M. Ripalda, A. Homs, S. Labouré, J. Susini, Rev. Sci. Instrum. 78, 025106 (2007). 10.1063/1.2459375 (Pubitemid 46363042)
34. L. E. Delong, O. G. Symko, and J. C. Wheatley, Rev. Sci. Instrum. 42, 147 (1971). 10.1063/1.1684846
35. Y. Fujiyoshi, T. Mizusaki, K. Morikawa, H. Yamagishi, Y. Aoki, H. Kihara, and Y. Harada, Ultramicroscopy 38, 241 (1991). 10.1016/0304-3991(91)90159-4
36. A. W. Robards and U. B. Sleytr, Low Temperature Methods in Biological Electron Microscopy (Elsevier, Amsterdam, 1991).
37. Y. Takayama and M. Nakasako, Rev. Sci. Instrum. 83, 054301 (2012). 10.1063/1.4718359
38. H. Iwamoto, J. Synchrotron Radiat. 16, 336 (2009). 10.1107/ S0909049509004828
39. R. Xu, S. Salha, K. S. Raines, H. Jiang, C.-C. Chen, Y. Takahashi, Y. Kohmura, Y. Nishino, C. Song, T. Ishikawa, and J. Miao, J. Synchrotron Radiat. 18, 293 (2011). 10.1107/S0909049510051733
40. Y. Takahashi, A. Suzuki, S. Furutaku, K. Yamauchi, Y. Kohmura, and T. Ishikawa, Appl. Phys. Lett. 102, 094102 (2013). 10.1063/1.4794063
41. K. Tamasaku, Y. Tanaka, M. Yabashi, H. Yamazaki, N. Kawamura, M. Suzuki, and T. Ishikawa, Nucl. Instrum. Methods Phys. Res. A 467-468, 686 (2001). 10.1016/S0168-9002(01)00446-6 (Pubitemid 32749014)
42. T. Ishikawa, H. Aoyagi, T. Asaka, Y. Asano, N. Azumi, T. Bizen, H. Ego, K. Fukami, T. Fukui, Y. Furukawa, S. Goto, H. Hanaki, T. Hara, T. Hasegawa, T. Hatsui, A. Higashiya, T. Hirono, N. Hosoda, M. Ishii, T. Inagaki, Y. Inubushi, T. Itoga, Y. Joti, M. Kago, T. Kameshima, H. Kimura, Y. Kirihara, A. Kiyomichi, T. Kobayashi, C. Kondo, T. Kudo, H. Maesaka, X. M. Maréchal, T. Masuda, S. Matsubara, T. Matsumoto, T. Matsushita, S. Matsui, M. Nagasono, N. Nariyama, H. Ohashi, T. Ohata, T. Ohshima, S. Ono, Y. Otake, C. Saji, T. Sakurai, T. Sato, K. Sawada, T. Seike, K. Shirasawa, T. Sugimoto, S. Suzuki, S. Takahashi, H. Takebe, K. Takeshita, K. Tamasaku, H. Tanaka, R. Tanaka, T. Tanaka, T. Togashi, K. Togawa, A. Tokuhisa, H. Tomizawa, K. Tono, S. Wu, M. Yabashi, M. Yamaga, A. Yamashita, K. Yanagida, C. Zhang, T. Shintake, H. Kitamura, and N. Kumagai, Nat. Photonics 6, 540 (2012). 10.1038/nphoton.2012.141
43. H. Yumoto, H. Mimura, T. Koyama, S. Matsuyama, K. Tono, T. Togashi, Y. Inubushi, T. Sato, T. Tanaka, T. Kimura, H. Yokoyama, J. Kim, Y. Sano, Y. Hachisu, M. Yabashi, H. Ohashi, H. Ohmori, T. Ishikawa, and K. Yamauchi, Nat. Photonics 7, 43 (2013). 10.1038/nphoton.2012.306
44. H. M. Quiney and K. Nugent, Nature Phys. 7, 142 (2011). 10.1038/nphys1859
45. S. P. Hau-Riege, A. Graf, T. Döppner, R. A. London, J. Krzywinski, C. Fortmann, S. H. Glenzer, M. Frank, K. Sokolowski-Tinten, M. Messerschmidt, C. Bostedt, S. Schnob, J. A. Bradley, A. Luttman, D. Rolles, A. Rudenko, and B. Rudek, Phys. Rev. Lett. 108, 217402 (2012). 10.1103/PhysRevLett.108.217402
46. T. Hatsui, T. Kameshima, S. Ono, Y. Kirihara, T. Kudo, K. Kobayashi, M. Omodani, K. Ozaki, Y. Joti, A. Tokuhisa, T. Horigome, M. Yamaga, Y. Furukawa, A. Kiyomichi, T. Sugimoto, T. Hirano, T. Ohata, A. Amselem, and R. Tanaka, J. Jpn. Soc. Synchrotron Rad. Res. 25, 82 (2012) (in Japanese).
47. C. H. Kuo, C. H. Chen, and M. H. Huang, Adv. Funct. Mater. 17, 3773 (2007) 10.1002/adfm.200700356
48. W. Kodama and M. Nakasako, Phys. Rev. E 84, 021902 (2011). 10.1103/PhysRevE.84.021902
49. T. Oroguchi and M. Nakasako, Phys. Rev. E 87, 022712 (2013). 10.1103/PhysRevE.87.022712
50. S. Marchesini, H. He, H. N. Chapman, S. P. Hau-Riege, A. Noy, M. R. Howells, U. Weierstall, and J. C. H. Spence, Phys. Rev. B 68, 140101 (2003). 10.1103/PhysRevB.68.140101
51. J. Miao, K. O. Hodgson, and D. Sayre, Proc. Natl. Acad. Sci. U.S.A. 98, 6641 (2001) 10.1073/pnas.111083998 (Pubitemid 32538269)
52. Y. Yoshida, H. Kuroiwa, O. Misumi, K. Nishida, F. Yagisawa, T. Fujiwara, H. Nanamiya, F. Kawamura, and T. Kuroiwa, Science 313, 1435 (2006). 10.1126/science.1129689 (Pubitemid 44360271)
53. Y. Yoshida, T. Fujiwara, Y. Imoto, M. Yoshida, M. Ohnuma, S. Hirooka, O. Misumi, H. Kuroiwa, S. Kato, S. Matsunaga, and T. Kuroiwa, J. Cell Sci. 126, 2392 (2013). 10.1242/jcs.116798
54. A. V. Martin, N. D. Loh, C. Y. Hampton, R. G. Sierra, F. Wang, A. Aquila, S. Bajt, M. Barthelmess, C. Bostedt, J. D. Bozek, N. Coppola, S. W. Epp, B. Erk, H. Fleckenstein, L. Foucar, M. Frank, H. Graafsma, L. Gumprecht, A. Hartmann, R. Hartmann, G. Hauser, H. Hirsemann, P. Holl, S. Kassemeyer, N. Kimmel, M. Liang, L. Lomb, F. R. N. C. Maia, S. Marchesini, K. Nass, E. Pedersoli, C. Reich, D. Rolles, B. Rudek, A. Rudenko, J. Schulz, R. L. Shoeman, H. Soltau, D. Starodub, J. Steinbrener, F. Stellato, L. Strüder, J. Ullrich, G. Weidenspointner, T. A. White, C. B. Wunderer, A. Barty, I. Schlichting, M. J. Bogan, and H. N. Chapman, Opt. Express 20, 13501 (2012). 10.1364/OE.20.013501
55. S. Ikeda and H. Kono, Opt. Express 20, 3375 (2012). 10.1364/OE.20.003375
56. J. M. Rodenburg, A. C. Hurst, A. G. Cullis, B. R. Dobson, F. Pfeiffer, O. Bunk, C. David, K. Jefimovs, and I. Johnson, Phys. Rev. Lett. 98, 034801 (2007). 10.1103/PhysRevLett.98.034801 (Pubitemid 46135218)
57. Y. Takahashi, A. Suzuki, N. Zettsu, Y. Kohmura, Y. Senba, H. Ohashi, K. Yamauchi, and T. Ishikawa, Phys. Rev. B 83, 214109 (2011). 10.1103/PhysRevB.83. 214109
58. R. L. Owen, E. Rudino-Pinera, and E. F. Garman, Proc. Natl. Acad. Sci. U.S.A. 103, 4912 (2006). 10.1073/pnas.0600973103
59. M. R. Howells, T. Beetz, H. N. Chapman, C. Cui, J. M. Holton, C. J. Jacobsen, J. Kirz, E. Lima, S. Marchesini, H. Miao, D. Sayre, D. A. Shapiro, J. C. H. Spence, and D. Starodub, J. Electron Spectrosc. Relat. Phenom. 170, 4 (2009). 10.1016/j.elspec.2008.10.008
60. H. Murakami, G. Ueno, N. Shimizu, T. Kumasaka, and M. Yamamoto, J. Appl. Crystallogr. 45, 234 (2012). 10.1107/S0021889812003585
61. D. Giannakis, P. Schwander, and A. Ourmazd, Opt. Express 20, 12799 (2012). 10.1364/OE.20.012799
62. K. S. Raines, S. Salha, R. L. Sandberg, H. Jiang, J. A. Rodriguez, B. P. Fahimian, H. C. Kapteyn, J. Du, and J. Miao, Nature (London) 463, 214 (2010). 10.1038/nature08705