메뉴 건너뛰기




Volumn 27, Issue 9, 2013, Pages 1390-1402

Minireview: Long noncoding RNAs: New "links" between gene expression and cellular outcomes in endocrinology

Author keywords

[No Author keywords available]

Indexed keywords

ANDROGEN RECEPTOR; ANTISENSE OLIGONUCLEOTIDE; DOUBLE STRANDED RNA; ESTROGEN RECEPTOR; GLUCOSE 6 PHOSPHATASE; HISTONE H3; HISTONE METHYLTRANSFERASE; LONG UNTRANSLATED RNA; MESSENGER RNA; MICRORNA; PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA; PHOSPHOENOLPYRUVATE CARBOXYKINASE (GTP); POLYCOMB REPRESSIVE COMPLEX 2; PROGESTERONE RECEPTOR; PROTEIN P53; RETINOIC ACID RECEPTOR; RIBOSOME RNA; RNA BINDING PROTEIN; RNA POLYMERASE II; SMALL NUCLEOLAR RNA; THYROID HORMONE RECEPTOR; TRANSCRIPTION FACTOR; TRANSFER RNA;

EID: 84883249942     PISSN: 08888809     EISSN: None     Source Type: Journal    
DOI: 10.1210/me.2013-1113     Document Type: Review
Times cited : (38)

References (99)
  • 1
    • 0014937223 scopus 로고
    • Central dogma of molecular biology
    • Crick F. Central dogma of molecular biology. Nature. 1970;227: 561-563.
    • (1970) Nature. , vol.227 , pp. 561-563
    • Crick, F.1
  • 2
    • 0142104045 scopus 로고    scopus 로고
    • Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs
    • Okazaki Y, Furuno M, Kasukawa T, et al. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573.
    • (2002) Nature. , vol.420 , pp. 563-573
    • Okazaki, Y.1    Furuno, M.2    Kasukawa, T.3
  • 3
    • 84865757142 scopus 로고    scopus 로고
    • Landscape of transcription in human cells
    • Djebali S, Davis CA, Merkel A, et al. Landscape of transcription in human cells. Nature. 2012;489:101-108.
    • (2012) Nature. , vol.489 , pp. 101-108
    • Djebali, S.1    Davis, C.A.2    Merkel, A.3
  • 4
    • 34250305146 scopus 로고    scopus 로고
    • Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
    • Birney E, Stamatoyannopoulos JA, Dutta A, et al. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature. 2007;447:799-816.
    • (2007) Nature. , vol.447 , pp. 799-816
    • Birney, E.1    Stamatoyannopoulos, J.A.2    Dutta, A.3
  • 5
    • 34250160256 scopus 로고    scopus 로고
    • RNA maps reveal new RNA classes and a possible function for pervasive transcription
    • Kapranov P, Cheng J, Dike S, et al. RNA maps reveal new RNA classes and a possible function for pervasive transcription. Science. 2007;316:1484-1488.
    • (2007) Science. , vol.316 , pp. 1484-1488
    • Kapranov, P.1    Cheng, J.2    Dike, S.3
  • 7
    • 0025727201 scopus 로고
    • Conservation of position and exclusive expression of mouse Xist from the inactive X chromosome
    • Brockdorff N, Ashworth A, Kay GF, et al. Conservation of position and exclusive expression of mouse Xist from the inactive X chromosome. Nature. 1991;351:329-331.
    • (1991) Nature. , vol.351 , pp. 329-331
    • Brockdorff, N.1    Ashworth, A.2    Kay, G.F.3
  • 8
    • 24644519490 scopus 로고    scopus 로고
    • The transcriptional landscape of the mammalian genome
    • Carninci P, Kasukawa T, Katayama S, et al. The transcriptional landscape of the mammalian genome. Science. 2005;309:1559-1563.
    • (2005) Science. , vol.309 , pp. 1559-1563
    • Carninci, P.1    Kasukawa, T.2    Katayama, S.3
  • 9
    • 84875200257 scopus 로고    scopus 로고
    • Long noncoding RNAs: Cellular address codes in development and disease
    • Batista PJ, Chang HY. Long noncoding RNAs: cellular address codes in development and disease. Cell. 2013;152:1298-1307.
    • (2013) Cell. , vol.152 , pp. 1298-1307
    • Batista, P.J.1    Chang, H.Y.2
  • 10
    • 84883214592 scopus 로고    scopus 로고
    • Sizing up long noncoding RNAs: Do lncRNAs have secondary and tertiary structure?
    • Novikova IV, Hennelly SP, Sanbonmatsu KY. Sizing up long noncoding RNAs: do lncRNAs have secondary and tertiary structure? Bioarchitecture. 2012;2.
    • (2012) Bioarchitecture , vol.2
    • Novikova, I.V.1    Hennelly, S.P.2    Sanbonmatsu, K.Y.3
  • 11
    • 84865839598 scopus 로고    scopus 로고
    • Long noncoding RNAs are rarely translated in two human cell lines
    • Bánfai B, Jia H, Khatun J, et al. Long noncoding RNAs are rarely translated in two human cell lines. Genome Res. 2012;22:1646-1657.
    • (2012) Genome Res. , vol.22 , pp. 1646-1657
    • Bánfai, B.1    Jia, H.2    Khatun, J.3
  • 12
    • 84861904178 scopus 로고    scopus 로고
    • Genome regulation by long noncoding RNAs
    • Rinn JL, Chang HY. Genome regulation by long noncoding RNAs. Annu Rev Biochem. 2012;81:145-166.
    • (2012) Annu Rev Biochem. , vol.81 , pp. 145-166
    • Rinn, J.L.1    Chang, H.Y.2
  • 13
    • 81055155799 scopus 로고    scopus 로고
    • Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes
    • Ingolia NT, Lareau LF, Weissman JS. Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes. Cell. 2011;147:789-802.
    • (2011) Cell. , vol.147 , pp. 789-802
    • Ingolia, N.T.1    Lareau, L.F.2    Weissman, J.S.3
  • 14
    • 84894532371 scopus 로고    scopus 로고
    • On the classification of long non-coding RNAs
    • Ma L, Bajic VB, Zhang Z. On the classification of long non-coding RNAs. RNA Biol. 2013;10(6).
    • (2013) RNA Biol , vol.10 , Issue.6
    • Ma, L.1    Bajic, V.B.2    Zhang, Z.3
  • 16
    • 67649671961 scopus 로고    scopus 로고
    • Long noncoding RNAs: Functional surprises from the RNA world
    • Wilusz JE, Sunwoo H, Spector DL. Long noncoding RNAs: functional surprises from the RNA world. Genes Dev. 2009;23:1494-1504.
    • (2009) Genes Dev. , vol.23 , pp. 1494-1504
    • Wilusz, J.E.1    Sunwoo, H.2    Spector, D.L.3
  • 17
    • 82155186923 scopus 로고    scopus 로고
    • The emergence of lncRNAs in cancer biology
    • Prensner JR, Chinnaiyan AM. The emergence of lncRNAs in cancer biology. Cancer Discov. 2011;1:391-407.
    • (2011) Cancer Discov. , vol.1 , pp. 391-407
    • Prensner, J.R.1    Chinnaiyan, A.M.2
  • 18
    • 84865727393 scopus 로고    scopus 로고
    • The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
    • Derrien T, Johnson R, Bussotti G, et al. The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression. Genome Res. 2012;22:1775-1789.
    • (2012) Genome Res. , vol.22 , pp. 1775-1789
    • Derrien, T.1    Johnson, R.2    Bussotti, G.3
  • 19
    • 62249133709 scopus 로고    scopus 로고
    • Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
    • Guttman M, Amit I, Garber M, et al. Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals. Nature. 2009;458:223-227.
    • (2009) Nature. , vol.458 , pp. 223-227
    • Guttman, M.1    Amit, I.2    Garber, M.3
  • 20
    • 79953888460 scopus 로고    scopus 로고
    • The functional role of long noncoding RNA in human carcinomas
    • Gibb EA, Brown CJ, Lam WL. The functional role of long noncoding RNA in human carcinomas. Mol Cancer. 2011;10:38.
    • (2011) Mol Cancer. , vol.10 , pp. 38
    • Gibb, E.A.1    Brown, C.J.2    Lam, W.L.3
  • 21
    • 84878865619 scopus 로고    scopus 로고
    • Ribosome profiling reveals resemblance between long non-coding RNAs and 5. Leaders of coding RNAs
    • Chew GL, Pauli A, Rinn JL, Regev A, Schier AF, Valen E. Ribosome profiling reveals resemblance between long non-coding RNAs and 5. leaders of coding RNAs. Development. 2013;140:2828-2834.
    • (2013) Development , vol.140 , pp. 2828-2834
    • Chew, G.L.1    Pauli, A.2    Rinn, J.L.3    Regev, A.4    Schier, A.F.5    Valen, E.6
  • 22
    • 77952148742 scopus 로고    scopus 로고
    • Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs
    • Guttman M, Garber M, Levin JZ, et al. Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs. Nat Biotechnol. 2010;28:503-510.
    • (2010) Nat Biotechnol. , vol.28 , pp. 503-510
    • Guttman, M.1    Garber, M.2    Levin, J.Z.3
  • 23
    • 80052978224 scopus 로고    scopus 로고
    • Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
    • Cabili MN, Trapnell C, Goff L, et al. Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses. Genes Dev. 2011;25:1915-1927.
    • (2011) Genes Dev. , vol.25 , pp. 1915-1927
    • Cabili, M.N.1    Trapnell, C.2    Goff, L.3
  • 24
    • 34547624303 scopus 로고    scopus 로고
    • Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
    • Mikkelsen TS, Ku M, Jaffe DB, et al. Genome-wide maps of chromatin state in pluripotent and lineage-committed cells. Nature. 2007;448:553-560.
    • (2007) Nature. , vol.448 , pp. 553-560
    • Mikkelsen, T.S.1    Ku, M.2    Jaffe, D.B.3
  • 25
    • 84874248583 scopus 로고    scopus 로고
    • Divergent transcription of long noncoding RNA/mRNA gene pairs in embryonic stem cells
    • Sigova AA, Mullen AC, Molinie B, et al. Divergent transcription of long noncoding RNA/mRNA gene pairs in embryonic stem cells. Proc Natl Acad Sci USA. 2013;110:2876-2881.
    • (2013) Proc Natl Acad Sci USA. , vol.110 , pp. 2876-2881
    • Sigova, A.A.1    Mullen, A.C.2    Molinie, B.3
  • 26
    • 77649177097 scopus 로고    scopus 로고
    • Predictive chromatin signatures in the mammalian genome
    • Hon GC, Hawkins RD, Ren B. Predictive chromatin signatures in the mammalian genome. Hum Mol Genet. 2009;18:R195-201.
    • (2009) Hum Mol Genet. , vol.18
    • Hon, G.C.1    Hawkins, R.D.2    Ren, B.3
  • 27
    • 84455206362 scopus 로고    scopus 로고
    • Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution
    • Ulitsky I, Shkumatava A, Jan CH, Sive H, Bartel DP. Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution. Cell. 2011;147:1537-1550.
    • (2011) Cell. , vol.147 , pp. 1537-1550
    • Ulitsky, I.1    Shkumatava, A.2    Jan, C.H.3    Sive, H.4    Bartel, D.P.5
  • 28
    • 77957243921 scopus 로고    scopus 로고
    • Long noncoding RNAs with enhancer-like function in human cells
    • Ørom UA, Derrien T, Beringer M, et al. Long noncoding RNAs with enhancer-like function in human cells. Cell. 2010;143:46-58.
    • (2010) Cell. , vol.143 , pp. 46-58
    • Ørom, U.A.1    Derrien, T.2    Beringer, M.3
  • 29
    • 34248162440 scopus 로고    scopus 로고
    • Functionality or transcriptional noise? Evidence for selection within long noncoding RNAs
    • Ponjavic J, Ponting CP, Lunter G. Functionality or transcriptional noise? Evidence for selection within long noncoding RNAs. Genome Res. 2007;17:556-565.
    • (2007) Genome Res. , vol.17 , pp. 556-565
    • Ponjavic, J.1    Ponting, C.P.2    Lunter, G.3
  • 30
    • 76249108851 scopus 로고    scopus 로고
    • Catalogues of mammalian long noncoding RNAs: Modest conservation and incompleteness
    • Marques AC, Ponting CP. Catalogues of mammalian long noncoding RNAs: modest conservation and incompleteness. Genome Biol. 2009;10:R124.
    • (2009) Genome Biol. , vol.10
    • Marques, A.C.1    Ponting, C.P.2
  • 31
    • 84873300214 scopus 로고    scopus 로고
    • Braveheart, a long noncoding RNA required for cardiovascular lineage commitment
    • Klattenhoff CA, Scheuermann JC, Surface LE, et al. Braveheart, a long noncoding RNA required for cardiovascular lineage commitment. Cell. 2013;152:570-583
    • (2013) Cell. , vol.152 , pp. 570-583
    • Klattenhoff, C.A.1    Scheuermann, J.C.2    Surface, L.E.3
  • 32
    • 84872135457 scopus 로고    scopus 로고
    • Control of somatic tissue differentiation by the long non-codingRNATINCR
    • Kretz M, Siprashvili Z, Chu C, et al. Control of somatic tissue differentiation by the long non-codingRNATINCR. Nature. 2013; 493:231-235.
    • (2013) Nature. , vol.493 , pp. 231-235
    • Kretz, M.1    Siprashvili, Z.2    Chu, C.3
  • 33
    • 84874500772 scopus 로고    scopus 로고
    • Long noncoding RNAs regulate adipogenesis
    • Sun L, Goff LA, Trapnell C, et al. Long noncoding RNAs regulate adipogenesis. Proc Natl Acad Sci USA. 2013;110:3387-3392.
    • (2013) Proc Natl Acad Sci USA. , vol.110 , pp. 3387-3392
    • Sun, L.1    Goff, L.A.2    Trapnell, C.3
  • 34
    • 84868705910 scopus 로고    scopus 로고
    • Long noncoding RNAs in cardiac development and pathophysiology
    • Schonrock N, Harvey RP, Mattick JS. Long noncoding RNAs in cardiac development and pathophysiology. Circ Res. 2012;111: 1349-1362.
    • (2012) Circ Res. , vol.111 , pp. 1349-1362
    • Schonrock, N.1    Harvey, R.P.2    Mattick, J.S.3
  • 35
    • 80052869283 scopus 로고    scopus 로고
    • LincRNAs act in the circuitry controlling pluripotency and differentiation
    • Guttman M, Donaghey J, Carey BW, et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature. 2011;477:295-300.
    • (2011) Nature. , vol.477 , pp. 295-300
    • Guttman, M.1    Donaghey, J.2    Carey, B.W.3
  • 36
    • 24644472515 scopus 로고    scopus 로고
    • Antisense transcription in the mammalian transcriptome
    • Katayama S, Tomaru Y, Kasukawa T, et al. Antisense transcription in the mammalian transcriptome. Science. 2005;309:1564-1566.
    • (2005) Science. , vol.309 , pp. 1564-1566
    • Katayama, S.1    Tomaru, Y.2    Kasukawa, T.3
  • 37
    • 79953673245 scopus 로고    scopus 로고
    • Expression of distinct RNAs from 3 untranslated regions
    • Mercer TR, Wilhelm D, Dinger ME, et al. Expression of distinct RNAs from 3 untranslated regions. Nucleic Acids Res. 2011;39: 2393-2403.
    • (2011) Nucleic Acids Res. , vol.39 , pp. 2393-2403
    • Mercer, T.R.1    Wilhelm, D.2    Dinger, M.E.3
  • 38
    • 80053613296 scopus 로고    scopus 로고
    • Promoter-associated long noncoding RNAs repress transcription through a RNA binding protein TLS
    • Kurokawa R. Promoter-associated long noncoding RNAs repress transcription through a RNA binding protein TLS. Adv Exp Med Biol. 2011;722:196-208.
    • (2011) Adv Exp Med Biol. , vol.722 , pp. 196-208
    • Kurokawa, R.1
  • 40
    • 0031044166 scopus 로고    scopus 로고
    • Xistdeficient mice are defective in dosage compensation but not spermatogenesis
    • Marahrens Y, Panning B, Dausman J, Strauss W, Jaenisch R. Xistdeficient mice are defective in dosage compensation but not spermatogenesis. Genes Dev. 1997;11:156-166.
    • (1997) Genes Dev. , vol.11 , pp. 156-166
    • Marahrens, Y.1    Panning, B.2    Dausman, J.3    Strauss, W.4    Jaenisch, R.5
  • 41
    • 0033637110 scopus 로고    scopus 로고
    • A shift from reversible to irreversible X inactivation is triggered during ES cell differentiation
    • Wutz A, Jaenisch R. A shift from reversible to irreversible X inactivation is triggered during ES cell differentiation. Mol Cell. 2000; 5:695-705.
    • (2000) Mol Cell. , vol.5 , pp. 695-705
    • Wutz, A.1    Jaenisch, R.2
  • 42
    • 0036479009 scopus 로고    scopus 로고
    • Chromosomal silencing and localization are mediated by different domains of Xist RNA
    • Wutz A, Rasmussen TP, Jaenisch R. Chromosomal silencing and localization are mediated by different domains of Xist RNA. Nat Genet. 2002;30:167-174.
    • (2002) Nat Genet. , vol.30 , pp. 167-174
    • Wutz, A.1    Rasmussen, T.P.2    Jaenisch, R.3
  • 43
    • 55349109963 scopus 로고    scopus 로고
    • Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome
    • Zhao J, Sun BK, Erwin JA, Song JJ, Lee JT. Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome. Science. 2008;322:750-756.
    • (2008) Science. , vol.322 , pp. 750-756
    • Zhao, J.1    Sun, B.K.2    Erwin, J.A.3    Song, J.J.4    Lee, J.T.5
  • 44
    • 79959948197 scopus 로고    scopus 로고
    • YY1 tethers Xist RNA to the inactive X nucleation center
    • Jeon Y, Lee JT. YY1 tethers Xist RNA to the inactive X nucleation center. Cell. 2011;146:119-133.
    • (2011) Cell. , vol.146 , pp. 119-133
    • Jeon, Y.1    Lee, J.T.2
  • 45
    • 79955468280 scopus 로고    scopus 로고
    • Long non-coding RNA ANRIL is required for the PRC2 recruitment to and silencing of p15(INK4B) tumor suppressor gene
    • Kotake Y, Nakagawa T, Kitagawa K, et al. Long non-coding RNA ANRIL is required for the PRC2 recruitment to and silencing of p15(INK4B) tumor suppressor gene. Oncogene. 2011;30:1956-1962.
    • (2011) Oncogene. , vol.30 , pp. 1956-1962
    • Kotake, Y.1    Nakagawa, T.2    Kitagawa, K.3
  • 46
    • 79953748673 scopus 로고    scopus 로고
    • A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression
    • Wang KC, Yang YW, Liu B, et al. A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression. Nature. 2011;472:120-124.
    • (2011) Nature. , vol.472 , pp. 120-124
    • Wang, K.C.1    Yang, Y.W.2    Liu, B.3
  • 47
    • 84874368349 scopus 로고    scopus 로고
    • Activating RNAs associate with Mediator to enhance chromatin architecture and transcription
    • Lai F, Orom UA, Cesaroni M, et al. Activating RNAs associate with Mediator to enhance chromatin architecture and transcription. Nature. 2013;494:497-501.
    • (2013) Nature. , vol.494 , pp. 497-501
    • Lai, F.1    Orom, U.A.2    Cesaroni, M.3
  • 48
    • 34250729138 scopus 로고    scopus 로고
    • Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs
    • Rinn JL, Kertesz M, Wang JK, et al. Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs. Cell. 2007;129:1311-1323.
    • (2007) Cell. , vol.129 , pp. 1311-1323
    • Rinn, J.L.1    Kertesz, M.2    Wang, J.K.3
  • 49
    • 77954572735 scopus 로고    scopus 로고
    • Long noncoding RNA as modular scaffold of histone modification complexes
    • Tsai MC, Manor O, Wan Y, et al. Long noncoding RNA as modular scaffold of histone modification complexes. Science. 2010;329: 689-693.
    • (2010) Science. , vol.329 , pp. 689-693
    • Tsai, M.C.1    Manor, O.2    Wan, Y.3
  • 50
    • 67650921949 scopus 로고    scopus 로고
    • Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression
    • Khalil AM, Guttman M, Huarte M, et al. Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression. Proc Natl Acad Sci USA. 2009; 106:11667-11672.
    • (2009) Proc Natl Acad Sci USA. , vol.106 , pp. 11667-11672
    • Khalil, A.M.1    Guttman, M.2    Huarte, M.3
  • 51
    • 78650253763 scopus 로고    scopus 로고
    • Genome-wide identification of polycomb-associated RNAs by RIP-seq
    • Zhao J, Ohsumi TK, Kung JT, et al. Genome-wide identification of polycomb-associated RNAs by RIP-seq. Mol Cell. 2010;40:939-953.
    • (2010) Mol Cell. , vol.40 , pp. 939-953
    • Zhao, J.1    Ohsumi, T.K.2    Kung, J.T.3
  • 52
    • 80053576647 scopus 로고    scopus 로고
    • Steroid receptor RNA activator-a nuclear receptor coregulator with multiple partners: Insights and challenges
    • Colley SM, Leedman PJ. Steroid receptor RNA activator-a nuclear receptor coregulator with multiple partners: insights and challenges. Biochimie. 2011;93:1966-1972.
    • (2011) Biochimie. , vol.93 , pp. 1966-1972
    • Colley, S.M.1    Leedman, P.J.2
  • 53
    • 0033515637 scopus 로고    scopus 로고
    • A steroid receptor coactivator, SRA, functions as an RNA and is present in an SRC-1 complex
    • Lanz RB, McKenna NJ, Onate SA, et al. A steroid receptor coactivator, SRA, functions as an RNA and is present in an SRC-1 complex. Cell. 1999;97:17-27.
    • (1999) Cell. , vol.97 , pp. 17-27
    • Lanz, R.B.1    McKenna, N.J.2    Onate, S.A.3
  • 54
    • 33744541544 scopus 로고    scopus 로고
    • SLIRP, a small SRA binding protein, is a nuclear receptor corepressor
    • Hatchell EC, Colley SM, Beveridge DJ, et al. SLIRP, a small SRA binding protein, is a nuclear receptor corepressor. Mol Cell. 2006; 22:657-668.
    • (2006) Mol Cell. , vol.22 , pp. 657-668
    • Hatchell, E.C.1    Colley, S.M.2    Beveridge, D.J.3
  • 55
    • 0035339146 scopus 로고    scopus 로고
    • Sharp, an inducible cofactor that integrates nuclear receptor repression and activation
    • Shi Y, Downes M, Xie W, et al. Sharp, an inducible cofactor that integrates nuclear receptor repression and activation. Genes Dev. 2001;15:1140-1151.
    • (2001) Genes Dev. , vol.15 , pp. 1140-1151
    • Shi, Y.1    Downes, M.2    Xie, W.3
  • 56
    • 33749125424 scopus 로고    scopus 로고
    • The RNA helicases p68/p72 and the noncoding RNA SRA are coregulators of MyoD and skeletal muscle differentiation
    • Caretti G, Schiltz RL, Dilworth FJ, et al. The RNA helicases p68/p72 and the noncoding RNA SRA are coregulators of MyoD and skeletal muscle differentiation. Dev Cell. 2006;11:547-560.
    • (2006) Dev Cell. , vol.11 , pp. 547-560
    • Caretti, G.1    Schiltz, R.L.2    Dilworth, F.J.3
  • 57
    • 33746820269 scopus 로고    scopus 로고
    • Alternative splicing of the first intron of the steroid receptor RNA activator (SRA) participates in the generation of coding and noncoding RNA isoforms in breast cancer cell lines
    • Hube F, Guo J, Chooniedass-Kothari S, et al. Alternative splicing of the first intron of the steroid receptor RNA activator (SRA) participates in the generation of coding and noncoding RNA isoforms in breast cancer cell lines. DNA Cell Biol. 2006;25: 418-428.
    • (2006) DNA Cell Biol. , vol.25 , pp. 418-428
    • Hube, F.1    Guo, J.2    Chooniedass-Kothari, S.3
  • 58
    • 77951638287 scopus 로고    scopus 로고
    • Noncoding RNA gas5 is a growth arrest-and starvation-associated repressor of the glucocorticoid receptor
    • Kino T, Hurt DE, Ichijo T, Nader N, Chrousos GP. Noncoding RNA gas5 is a growth arrest-and starvation-associated repressor of the glucocorticoid receptor. Sci Signal. 2010;3:ra8.
    • (2010) Sci Signal. , vol.3
    • Kino, T.1    Hurt, D.E.2    Ichijo, T.3    Nader, N.4    Chrousos, G.P.5
  • 59
    • 77953957633 scopus 로고    scopus 로고
    • A coding-independent function of gene and pseudogene mRNAs regulates tumour biology
    • Poliseno L, Salmena L, Zhang J, Carver B, Haveman WJ, Pandolfi PP. A coding-independent function of gene and pseudogene mRNAs regulates tumour biology. Nature. 2010;465:1033-1038.
    • (2010) Nature. , vol.465 , pp. 1033-1038
    • Poliseno, L.1    Salmena, L.2    Zhang, J.3    Carver, B.4    Haveman, W.J.5    Pandolfi, P.P.6
  • 60
    • 80054715378 scopus 로고    scopus 로고
    • A long noncoding RNA controls muscle differentiation by functioning as a competing endogenous RNA
    • Cesana M, Cacchiarelli D, Legnini I, et al. A long noncoding RNA controls muscle differentiation by functioning as a competing endogenous RNA. Cell. 2011;147:358-369.
    • (2011) Cell. , vol.147 , pp. 358-369
    • Cesana, M.1    Cacchiarelli, D.2    Legnini, I.3
  • 61
    • 84876367541 scopus 로고    scopus 로고
    • Endogenous miRNA sponge lincRNARoR regulates Oct4, Nanog, and Sox2 in human embryonic stem cell self-renewal
    • Wang Y, Xu Z, Jiang J, et al. Endogenous miRNA sponge lincRNARoR regulates Oct4, Nanog, and Sox2 in human embryonic stem cell self-renewal. Dev Cell. 2013;25:69-80.
    • (2013) Dev Cell. , vol.25 , pp. 69-80
    • Wang, Y.1    Xu, Z.2    Jiang, J.3
  • 62
    • 78649467088 scopus 로고    scopus 로고
    • Large intergenic noncoding RNA-RoR modulates reprogramming of human induced pluripotent stem cells
    • Loewer S, Cabili MN, Guttman M, et al. Large intergenic noncoding RNA-RoR modulates reprogramming of human induced pluripotent stem cells. Nat Genet. 2010;42:1113-1117.
    • (2010) Nat Genet. , vol.42 , pp. 1113-1117
    • Loewer, S.1    Cabili, M.N.2    Guttman, M.3
  • 63
    • 84876177255 scopus 로고    scopus 로고
    • A pseudogene longnoncoding-RNA network regulates PTEN transcription and translation in human cells
    • Johnsson P, Ackley A, Vidarsdottir L, et al. A pseudogene longnoncoding-RNA network regulates PTEN transcription and translation in human cells. Nat Struct Mol Biol. 2013;20:440-446.
    • (2013) Nat Struct Mol Biol. , vol.20 , pp. 440-446
    • Johnsson, P.1    Ackley, A.2    Vidarsdottir, L.3
  • 64
    • 79951495822 scopus 로고    scopus 로고
    • LncRNAs transactivate STAU1-mediated mRNA decay by duplexing with 3 UTRs via Alu elements
    • Gong C, Maquat LE. lncRNAs transactivate STAU1-mediated mRNA decay by duplexing with 3 UTRs via Alu elements. Nature. 2011;470:284-288.
    • (2011) Nature. , vol.470 , pp. 284-288
    • Gong, C.1    Maquat, L.E.2
  • 65
    • 84872495808 scopus 로고    scopus 로고
    • Pivots of pluripotency: The roles of noncoding RNA in regulating embryonic and induced pluripotent stem cells
    • Huo JS, Zambidis ET. Pivots of pluripotency: the roles of noncoding RNA in regulating embryonic and induced pluripotent stem cells. Biochim Biophys Acta. 2013;1830:2385-2394.
    • (2013) Biochim Biophys Acta. , vol.1830 , pp. 2385-2394
    • Huo, J.S.1    Zambidis, E.T.2
  • 67
    • 84867900638 scopus 로고    scopus 로고
    • Long non-coding RNAs and cancer: A new frontier of translational research?
    • Spizzo R, Almeida MI, Colombatti A, Calin GA. Long non-coding RNAs and cancer: a new frontier of translational research? Oncogene. 2012;31:4577-4587.
    • (2012) Oncogene. , vol.31 , pp. 4577-4587
    • Spizzo, R.1    Almeida, M.I.2    Colombatti, A.3    Calin, G.A.4
  • 68
    • 84867291885 scopus 로고    scopus 로고
    • Long noncoding RNA: Its physiological and pathological roles
    • Yan B, Wang Z. Long noncoding RNA: its physiological and pathological roles. DNA Cell Biol. 2012;31(suppl 1):S34-S41.
    • (2012) DNA Cell Biol. , vol.31 , Issue.SUPPL. 1
    • Yan, B.1    Wang, Z.2
  • 69
    • 78649955414 scopus 로고    scopus 로고
    • Multiple roles for the non-codingRNA SRA in regulation of adipogenesis and insulin sensitivity
    • Xu B, Gerin I, Miao H, et al. Multiple roles for the non-codingRNA SRA in regulation of adipogenesis and insulin sensitivity. PLoS One. 2010;5:e14199.
    • (2010) PLoS One. , vol.5
    • Xu, B.1    Gerin, I.2    Miao, H.3
  • 70
    • 63049123701 scopus 로고    scopus 로고
    • Dax-1 and steroid receptor RNA activator (SRA) function as transcriptional coactivators for steroidogenic factor 1 in steroidogenesis
    • Xu B, Yang WH, Gerin I, Hu CD, Hammer GD, Koenig RJ. Dax-1 and steroid receptor RNA activator (SRA) function as transcriptional coactivators for steroidogenic factor 1 in steroidogenesis. Mol Cell Biol. 2009;29:1719-1734.
    • (2009) Mol Cell Biol. , vol.29 , pp. 1719-1734
    • Xu, B.1    Yang, W.H.2    Gerin, I.3    Hu, C.D.4    Hammer, G.D.5    Koenig, R.J.6
  • 71
    • 78649401946 scopus 로고    scopus 로고
    • Dax1 upregulates Oct4 expression in mouse embryonic stem cells via LRH-1 and SRA
    • Kelly VR, Xu B, Kuick R, Koenig RJ, Hammer GD. Dax1 upregulates Oct4 expression in mouse embryonic stem cells via LRH-1 and SRA. Mol Endocrinol. 2010;24:2281-2291.
    • (2010) Mol Endocrinol. , vol.24 , pp. 2281-2291
    • Kelly, V.R.1    Xu, B.2    Kuick, R.3    Koenig, R.J.4    Hammer, G.D.5
  • 72
  • 73
    • 77954853506 scopus 로고    scopus 로고
    • Research resource: Expression profiling reveals unexpected targets and functions of the human steroid receptor RNA activator (SRA) gene
    • Foulds CE, Tsimelzon A, Long W, et al. Research resource: expression profiling reveals unexpected targets and functions of the human steroid receptor RNA activator (SRA) gene. Mol Endocrinol. 2010;24:1090-1105.
    • (2010) Mol Endocrinol. , vol.24 , pp. 1090-1105
    • Foulds, C.E.1    Tsimelzon, A.2    Long, W.3
  • 74
    • 2442597244 scopus 로고    scopus 로고
    • The steroid receptorRNAactivator is the first functionalRNAencoding a protein
    • Chooniedass-Kothari S, Emberley E, Hamedani MK, et al. The steroid receptorRNAactivator is the first functionalRNAencoding a protein. FEBS Lett. 2004;566:43-47.
    • (2004) FEBS Lett. , vol.566 , pp. 43-47
    • Chooniedass-Kothari, S.1    Emberley, E.2    Hamedani, M.K.3
  • 75
    • 33646122697 scopus 로고    scopus 로고
    • Overlapping BXSB congenic intervals, in combination with microarray gene expression, reveal novel lupus candidate genes
    • Haywood ME, Rose SJ, Horswell S, et al. Overlapping BXSB congenic intervals, in combination with microarray gene expression, reveal novel lupus candidate genes. Genes Immun. 2006;7:250-263.
    • (2006) Genes Immun. , vol.7 , pp. 250-263
    • Haywood, M.E.1    Rose, S.J.2    Horswell, S.3
  • 77
    • 84879462680 scopus 로고    scopus 로고
    • Androgen-responsive long noncoding RNA CTBP1-AS promotes prostate cancer
    • Takayama K, Horie-Inoue K, Katayama S, et al. Androgen-responsive long noncoding RNA CTBP1-AS promotes prostate cancer. EMBO J. 2013;32:1665-1680.
    • (2013) EMBO J. , vol.32 , pp. 1665-1680
    • Takayama, K.1    Horie-Inoue, K.2    Katayama, S.3
  • 78
    • 79551646237 scopus 로고    scopus 로고
    • Integration of cap analysis of gene expression and chromatin immunoprecipitation analysis on array reveals genome-wide androgen receptor signaling in prostate cancer cells
    • Takayama K, Tsutsumi S, Katayama S, et al. Integration of cap analysis of gene expression and chromatin immunoprecipitation analysis on array reveals genome-wide androgen receptor signaling in prostate cancer cells. Oncogene. 2011;30:619-630.
    • (2011) Oncogene. , vol.30 , pp. 619-630
    • Takayama, K.1    Tsutsumi, S.2    Katayama, S.3
  • 79
    • 49449117338 scopus 로고    scopus 로고
    • Antisense transcripts are targets for activating small RNAs
    • Schwartz JC, Younger ST, Nguyen NB, et al. Antisense transcripts are targets for activating small RNAs. Nat Struct Mol Biol. 2008; 15:842-848.
    • (2008) Nat Struct Mol Biol. , vol.15 , pp. 842-848
    • Schwartz, J.C.1    Younger, S.T.2    Nguyen, N.B.3
  • 81
    • 79955836460 scopus 로고    scopus 로고
    • A rapid, extensive, and transient transcriptional response to estrogen signaling in breast cancer cells
    • Hah N, Danko CG, Core L, et al. A rapid, extensive, and transient transcriptional response to estrogen signaling in breast cancer cells. Cell. 2011;145:622-634.
    • (2011) Cell. , vol.145 , pp. 622-634
    • Hah, N.1    Danko, C.G.2    Core, L.3
  • 82
    • 0034751523 scopus 로고    scopus 로고
    • Persistent changes in gene expression induced by estrogen and progesterone in the rat mammary gland
    • Ginger MR, Gonzalez-Rimbau MF, Gay JP, Rosen JM. Persistent changes in gene expression induced by estrogen and progesterone in the rat mammary gland. Mol Endocrinol. 2001;15: 1993-2009.
    • (2001) Mol Endocrinol. , vol.15 , pp. 1993-2009
    • Ginger, M.R.1    Gonzalez-Rimbau, M.F.2    Gay, J.P.3    Rosen, J.M.4
  • 83
    • 33645823589 scopus 로고    scopus 로고
    • A noncoding RNA is a potential marker of cell fate during mammary gland development
    • Ginger MR, Shore AN, Contreras A, et al. A noncoding RNA is a potential marker of cell fate during mammary gland development. Proc Natl Acad Sci USA. 2006;103:5781-5786.
    • (2006) Proc Natl Acad Sci USA. , vol.103 , pp. 5781-5786
    • Ginger, M.R.1    Shore, A.N.2    Contreras, A.3
  • 84
    • 84864607981 scopus 로고    scopus 로고
    • Pregnancy-induced noncoding RNA (PINC) associates with polycomb repressive complex 2. And regulates mammary epithelial differentiation
    • Shore AN, Kabotyanski EB, Roarty K, et al. Pregnancy-induced noncoding RNA (PINC) associates with polycomb repressive complex 2. and regulates mammary epithelial differentiation. PLoS Genet. 2012;8:e1002840.
    • (2012) PLoS Genet. , vol.8
    • Shore, A.N.1    Kabotyanski, E.B.2    Roarty, K.3
  • 85
    • 79955005458 scopus 로고    scopus 로고
    • SNORD-host RNAZfas1 is a regulator of mammary development and a potential marker for breast cancer
    • Askarian-Amiri ME, Crawford J, French JD, et al. SNORD-host RNAZfas1 is a regulator of mammary development and a potential marker for breast cancer. RNA. 2011;17:878-891.
    • (2011) RNA. , vol.17 , pp. 878-891
    • Askarian-Amiri, M.E.1    Crawford, J.2    French, J.D.3
  • 86
    • 60149092541 scopus 로고    scopus 로고
    • The long noncoding RNA Kcnq1ot1 organises a lineage-specific nuclear domain for epigenetic gene silencing
    • Redrup L, Branco MR, Perdeaux ER, et al. The long noncoding RNA Kcnq1ot1 organises a lineage-specific nuclear domain for epigenetic gene silencing. Development. 2009;136:525-530.
    • (2009) Development. , vol.136 , pp. 525-530
    • Redrup, L.1    Branco, M.R.2    Perdeaux, E.R.3
  • 87
    • 36148967315 scopus 로고    scopus 로고
    • Suggestive evidence for chromosomal localization of non-coding RNA from imprinted LIT1
    • Murakami K, Oshimura M, Kugoh H. Suggestive evidence for chromosomal localization of non-coding RNA from imprinted LIT1. J Hum Genet. 2007;52:926-933.
    • (2007) J Hum Genet. , vol.52 , pp. 926-933
    • Murakami, K.1    Oshimura, M.2    Kugoh, H.3
  • 88
    • 56549111129 scopus 로고    scopus 로고
    • The air noncoding RNA epigenetically silences transcription by targeting G9a to chromatin
    • Nagano T, Mitchell JA, Sanz LA, et al. The air noncoding RNA epigenetically silences transcription by targeting G9a to chromatin. Science. 2008;322:1717-1720.
    • (2008) Science. , vol.322 , pp. 1717-1720
    • Nagano, T.1    Mitchell, J.A.2    Sanz, L.A.3
  • 89
    • 54049138948 scopus 로고    scopus 로고
    • Kcnq1ot1 antisense noncoding RNA mediates lineage-specific transcriptional silencing through chromatin-level regulation
    • Pandey RR, Mondal T, Mohammad F, et al. Kcnq1ot1 antisense noncoding RNA mediates lineage-specific transcriptional silencing through chromatin-level regulation. Mol Cell. 2008;32:232-246.
    • (2008) Mol Cell. , vol.32 , pp. 232-246
    • Pandey, R.R.1    Mondal, T.2    Mohammad, F.3
  • 91
    • 0032898752 scopus 로고    scopus 로고
    • Xist RNA exhibits a banded localization on the inactive X chromosome and is excluded from autosomal material in cis
    • Duthie SM, Nesterova TB, Formstone EJ, et al. Xist RNA exhibits a banded localization on the inactive X chromosome and is excluded from autosomal material in cis. Hum Mol Genet. 1999;8: 195-204.
    • (1999) Hum Mol Genet. , vol.8 , pp. 195-204
    • Duthie, S.M.1    Nesterova, T.B.2    Formstone, E.J.3
  • 92
    • 0032514257 scopus 로고    scopus 로고
    • Stabilization and localization of Xist RNA are controlled by separate mechanisms and are not sufficient for X inactivation
    • Clemson CM, Chow JC, Brown CJ, Lawrence JB. Stabilization and localization of Xist RNA are controlled by separate mechanisms and are not sufficient for X inactivation. J Cell Biol. 1998;142: 13-23.
    • (1998) J Cell Biol. , vol.142 , pp. 13-23
    • Clemson, C.M.1    Chow, J.C.2    Brown, C.J.3    Lawrence, J.B.4
  • 93
    • 80054756754 scopus 로고    scopus 로고
    • Genomic maps of long noncoding RNA occupancy reveal principles of RNA-chromatin interactions
    • Chu C, Qu K, Zhong FL, Artandi SE, Chang HY. Genomic maps of long noncoding RNA occupancy reveal principles of RNA-chromatin interactions. Mol Cell. 2011;44:667-678.
    • (2011) Mol Cell. , vol.44 , pp. 667-678
    • Chu, C.1    Qu, K.2    Zhong, F.L.3    Artandi, S.E.4    Chang, H.Y.5
  • 95
    • 79952635167 scopus 로고    scopus 로고
    • Prostate cancer: Diagnostic performance of the PCA3 urine test
    • Lee GL, Dobi A, Srivastava S. Prostate cancer: diagnostic performance of the PCA3 urine test. Nat Rev Urol. 2011;8:123-124.
    • (2011) Nat Rev Urol. , vol.8 , pp. 123-124
    • Lee, G.L.1    Dobi, A.2    Srivastava, S.3
  • 96
    • 77951118936 scopus 로고    scopus 로고
    • Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis
    • Gupta RA, Shah N, Wang KC, et al. Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis. Nature. 2010;464:1071-1076.
    • (2010) Nature. , vol.464 , pp. 1071-1076
    • Gupta, R.A.1    Shah, N.2    Wang, K.C.3
  • 97
    • 84873451950 scopus 로고    scopus 로고
    • The noncoding RNAMALAT1 is a critical regulator of the metastasis phenotype of lung cancer cells
    • Gutschner T, Hammerle M, Eissmann M, et al. The noncoding RNAMALAT1 is a critical regulator of the metastasis phenotype of lung cancer cells. Cancer Res. 2013;73:1180-1189.
    • (2013) Cancer Res. , vol.73 , pp. 1180-1189
    • Gutschner, T.1    Hammerle, M.2    Eissmann, M.3
  • 98
    • 84880792943 scopus 로고    scopus 로고
    • Novel long non-coding RNAs are regulated by angiotensin II in vascular smooth muscle cells
    • [published online ahead of print May 22, 2013]. doi:10.1161/ CIRCRESAHA.112.300849
    • Leung A, Trac C, Jin W, et al. Novel long non-coding RNAs are regulated by angiotensin II in vascular smooth muscle cells [published online ahead of print May 22, 2013]. Circ Res. doi:10.1161/ CIRCRESAHA.112.300849.
    • Circ Res
    • Leung, A.1    Trac, C.2    Jin, W.3
  • 99
    • 84873668884 scopus 로고    scopus 로고
    • Long non-coding RNAs: Challenges for diagnosis and therapies
    • Sánchez Y, Huarte M. Long non-coding RNAs: challenges for diagnosis and therapies. Nucleic Acid Ther. 2013;23:15-20.
    • (2013) Nucleic Acid Ther. , vol.23 , pp. 15-20
    • Sánchez, Y.1    Huarte, M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.