메뉴 건너뛰기




Volumn 31, Issue 6, 2013, Pages 811-817

Synthetic biology: Tools to design microbes for the production of chemicals and fuels

Author keywords

Biochemical; Biofuel; Expression control; Metabolic engineering; Microbial cell factory; Synthetic biology

Indexed keywords

BIOCHEMICAL; DESIGN TOOL; EXPRESSION CONTROLS; MICROBIAL CELL FACTORIES; MULTIPLE LEVELS; POST-TRANSCRIPTIONAL; PROGRAMMABLE CONTROLS; SYNTHETIC BIOLOGY;

EID: 84882633318     PISSN: 07349750     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.biotechadv.2013.03.012     Document Type: Review
Times cited : (58)

References (87)
  • 1
    • 77957329119 scopus 로고    scopus 로고
    • Isoprenoid pathway optimization for Taxol precursor overproduction in Escherichia coli
    • Ajikumar P.K., Xiao W.H., Tyo K.E., Wang Y., Simeon F., Leonard E., et al. Isoprenoid pathway optimization for Taxol precursor overproduction in Escherichia coli. Science 2010, 330:70-74.
    • (2010) Science , vol.330 , pp. 70-74
    • Ajikumar, P.K.1    Xiao, W.H.2    Tyo, K.E.3    Wang, Y.4    Simeon, F.5    Leonard, E.6
  • 2
    • 33847083318 scopus 로고    scopus 로고
    • Global transcription machinery engineering: a new approach for improving cellular phenotype
    • Alper H., Stephanopoulos G. Global transcription machinery engineering: a new approach for improving cellular phenotype. Metab Eng 2007, 9:258-267.
    • (2007) Metab Eng , vol.9 , pp. 258-267
    • Alper, H.1    Stephanopoulos, G.2
  • 4
    • 33845442201 scopus 로고    scopus 로고
    • Engineering yeast transcription machinery for improved ethanol tolerance and production
    • Alper H., Moxley J., Nevoigt E., Fink G.R., Stephanopoulos G. Engineering yeast transcription machinery for improved ethanol tolerance and production. Science 2006, 314:1565-1568.
    • (2006) Science , vol.314 , pp. 1565-1568
    • Alper, H.1    Moxley, J.2    Nevoigt, E.3    Fink, G.R.4    Stephanopoulos, G.5
  • 5
    • 79952470599 scopus 로고    scopus 로고
    • Adjustment of codon usage frequencies by codon harmonization improves protein expression and folding
    • Angov E., Legler P.M., Mease R.M. Adjustment of codon usage frequencies by codon harmonization improves protein expression and folding. Methods Mol Biol 2011, 705:1-13.
    • (2011) Methods Mol Biol , vol.705 , pp. 1-13
    • Angov, E.1    Legler, P.M.2    Mease, R.M.3
  • 6
    • 0036898867 scopus 로고    scopus 로고
    • Modular design of artificial transcription factors
    • Ansari A.Z., Mapp A.K. Modular design of artificial transcription factors. Curr Opin Chem Biol 2002, 6:765-772.
    • (2002) Curr Opin Chem Biol , vol.6 , pp. 765-772
    • Ansari, A.Z.1    Mapp, A.K.2
  • 7
    • 84865716528 scopus 로고    scopus 로고
    • Evaluation and biosynthetic incorporation of chlorotyrosine into recombinant proteins
    • Ayyadurai N., Deepankumar K., Prabhu N., Budisa N., Yun H. Evaluation and biosynthetic incorporation of chlorotyrosine into recombinant proteins. Biotechnol Bioprocess Eng 2012, 17:679-686.
    • (2012) Biotechnol Bioprocess Eng , vol.17 , pp. 679-686
    • Ayyadurai, N.1    Deepankumar, K.2    Prabhu, N.3    Budisa, N.4    Yun, H.5
  • 8
    • 79953159550 scopus 로고    scopus 로고
    • Sensitive and accurate identification of protein-DNA binding events in ChIP-chip assays using higher order derivative analysis
    • Barrett C.L., Cho B.K., Palsson B.O. Sensitive and accurate identification of protein-DNA binding events in ChIP-chip assays using higher order derivative analysis. Nucleic Acids Res 2011, 39:1656-1665.
    • (2011) Nucleic Acids Res , vol.39 , pp. 1656-1665
    • Barrett, C.L.1    Cho, B.K.2    Palsson, B.O.3
  • 9
    • 70349778813 scopus 로고    scopus 로고
    • RNA-based computation in live cells
    • Benenson Y. RNA-based computation in live cells. Curr Opin Biotechnol 2009, 20:471-478.
    • (2009) Curr Opin Biotechnol , vol.20 , pp. 471-478
    • Benenson, Y.1
  • 10
    • 84871770439 scopus 로고    scopus 로고
    • Promoter engineering: recent advances in controlling transcription at the most fundamental level
    • Blazeck J., Alper H.S. Promoter engineering: recent advances in controlling transcription at the most fundamental level. Biotechnol J 2012, 8:46-58.
    • (2012) Biotechnol J , vol.8 , pp. 46-58
    • Blazeck, J.1    Alper, H.S.2
  • 11
    • 83055177124 scopus 로고    scopus 로고
    • Tuning gene expression in Yarrowia lipolytica by a hybrid promoter approach
    • Blazeck J., Liu L., Redden H., Alper H. Tuning gene expression in Yarrowia lipolytica by a hybrid promoter approach. Appl Environ Microbiol 2011, 77:7905-7914.
    • (2011) Appl Environ Microbiol , vol.77 , pp. 7905-7914
    • Blazeck, J.1    Liu, L.2    Redden, H.3    Alper, H.4
  • 12
    • 84866744379 scopus 로고    scopus 로고
    • Controlling promoter strength and regulation in Saccharomyces cerevisiae using synthetic hybrid promoters
    • Blazeck J., Garg R., Reed B., Alper H.S. Controlling promoter strength and regulation in Saccharomyces cerevisiae using synthetic hybrid promoters. Biotechnol Bioeng 2012, 109:2884-2895.
    • (2012) Biotechnol Bioeng , vol.109 , pp. 2884-2895
    • Blazeck, J.1    Garg, R.2    Reed, B.3    Alper, H.S.4
  • 13
    • 54349084011 scopus 로고    scopus 로고
    • Escherichia coli strains with promoter libraries constructed by Red/ET recombination pave the way for transcriptional fine-tuning
    • Braatsch S., Helmark S., Kranz H., Koebmann B., Jensen P.R. Escherichia coli strains with promoter libraries constructed by Red/ET recombination pave the way for transcriptional fine-tuning. Biotechniques 2008, 45:335-337.
    • (2008) Biotechniques , vol.45 , pp. 335-337
    • Braatsch, S.1    Helmark, S.2    Kranz, H.3    Koebmann, B.4    Jensen, P.R.5
  • 15
    • 0037863216 scopus 로고    scopus 로고
    • In vivo evolution of an RNA-based transcriptional activator
    • Buskirk A.R., Kehayova P.D., Landrigan A., Liu D.R. In vivo evolution of an RNA-based transcriptional activator. Chem Biol 2003, 10:533-540.
    • (2003) Chem Biol , vol.10 , pp. 533-540
    • Buskirk, A.R.1    Kehayova, P.D.2    Landrigan, A.3    Liu, D.R.4
  • 16
    • 4344646564 scopus 로고    scopus 로고
    • Engineering a ligand-dependent RNA transcriptional activator
    • Buskirk A.R., Landrigan A., Liu D.R. Engineering a ligand-dependent RNA transcriptional activator. Chem Biol 2004, 11:1157-1163.
    • (2004) Chem Biol , vol.11 , pp. 1157-1163
    • Buskirk, A.R.1    Landrigan, A.2    Liu, D.R.3
  • 18
    • 84455174703 scopus 로고    scopus 로고
    • Model-driven engineering of RNA devices to quantitatively program gene expression
    • Carothers J.M., Goler J.A., Juminaga D., Keasling J.D. Model-driven engineering of RNA devices to quantitatively program gene expression. Science 2011, 334:1716-1719.
    • (2011) Science , vol.334 , pp. 1716-1719
    • Carothers, J.M.1    Goler, J.A.2    Juminaga, D.3    Keasling, J.D.4
  • 19
    • 84866050528 scopus 로고    scopus 로고
    • Enhanced multiplex genome engineering through co-operative oligonucleotide co-selection
    • Carr P.A., Wang H.H., Sterling B., Isaacs F.J., Lajoie M.J., Xu G., et al. Enhanced multiplex genome engineering through co-operative oligonucleotide co-selection. Nucleic Acids Res 2012, 40:e132.
    • (2012) Nucleic Acids Res , vol.40
    • Carr, P.A.1    Wang, H.H.2    Sterling, B.3    Isaacs, F.J.4    Lajoie, M.J.5    Xu, G.6
  • 21
    • 77956652264 scopus 로고    scopus 로고
    • Programming cells: towards an automated 'Genetic Compiler'
    • Clancy K., Voigt C.A. Programming cells: towards an automated 'Genetic Compiler'. Curr Opin Biotechnol 2010, 21:572-581.
    • (2010) Curr Opin Biotechnol , vol.21 , pp. 572-581
    • Clancy, K.1    Voigt, C.A.2
  • 22
    • 84863229940 scopus 로고    scopus 로고
    • DNA-guided assembly of biosynthetic pathways promotes improved catalytic efficiency
    • Conrado R.J., Wu G.C., Boock J.T., Xu H., Chen S.Y., Lebar T., et al. DNA-guided assembly of biosynthetic pathways promotes improved catalytic efficiency. Nucleic Acids Res 2012, 40:1879-1889.
    • (2012) Nucleic Acids Res , vol.40 , pp. 1879-1889
    • Conrado, R.J.1    Wu, G.C.2    Boock, J.T.3    Xu, H.4    Chen, S.Y.5    Lebar, T.6
  • 24
    • 79951565301 scopus 로고    scopus 로고
    • Design, construction and characterization of a set of insulated bacterial promoters
    • Davis J.H., Rubin A.J., Sauer R.T. Design, construction and characterization of a set of insulated bacterial promoters. Nucleic Acids Res 2011, 39:1131-1141.
    • (2011) Nucleic Acids Res , vol.39 , pp. 1131-1141
    • Davis, J.H.1    Rubin, A.J.2    Sauer, R.T.3
  • 25
    • 0025166089 scopus 로고
    • Secondary structure of the ribosome binding site determines translational efficiency: a quantitative analysis
    • de Smit M.H., van Duin J. Secondary structure of the ribosome binding site determines translational efficiency: a quantitative analysis. Proc Natl Acad Sci U S A 1990, 87:7668-7672.
    • (1990) Proc Natl Acad Sci U S A , vol.87 , pp. 7668-7672
    • de Smit, M.H.1    van Duin, J.2
  • 26
    • 0028036559 scopus 로고
    • Control of translation by mRNA secondary structure in Escherichia coli. A quantitative analysis of literature data
    • de Smit M.H., van Duin J. Control of translation by mRNA secondary structure in Escherichia coli. A quantitative analysis of literature data. J Mol Biol 1994, 244:144-150.
    • (1994) J Mol Biol , vol.244 , pp. 144-150
    • de Smit, M.H.1    van Duin, J.2
  • 27
    • 0028103746 scopus 로고
    • Translational initiation on structured messengers. Another role for the Shine-Dalgarno interaction
    • de Smit M.H., van Duin J. Translational initiation on structured messengers. Another role for the Shine-Dalgarno interaction. J Mol Biol 1994, 235:173-184.
    • (1994) J Mol Biol , vol.235 , pp. 173-184
    • de Smit, M.H.1    van Duin, J.2
  • 28
    • 79960697001 scopus 로고    scopus 로고
    • Organization of intracellular reactions with rationally designed RNA assemblies
    • Delebecque C.J., Lindner A.B., Silver P.A., Aldaye F.A. Organization of intracellular reactions with rationally designed RNA assemblies. Science 2011, 333:470-474.
    • (2011) Science , vol.333 , pp. 470-474
    • Delebecque, C.J.1    Lindner, A.B.2    Silver, P.A.3    Aldaye, F.A.4
  • 29
    • 84870027847 scopus 로고    scopus 로고
    • Designing and using RNA scaffolds to assemble proteins in vivo
    • Delebecque C.J., Silver P.A., Lindner A.B. Designing and using RNA scaffolds to assemble proteins in vivo. Nat Protoc 2012, 7:1797-1807.
    • (2012) Nat Protoc , vol.7 , pp. 1797-1807
    • Delebecque, C.J.1    Silver, P.A.2    Lindner, A.B.3
  • 30
    • 77953642931 scopus 로고    scopus 로고
    • High-throughput metabolic engineering: advances in small-molecule screening and selection
    • Dietrich J.A., McKee A.E., Keasling J.D. High-throughput metabolic engineering: advances in small-molecule screening and selection. Annu Rev Biochem 2010, 79:563-590.
    • (2010) Annu Rev Biochem , vol.79 , pp. 563-590
    • Dietrich, J.A.1    McKee, A.E.2    Keasling, J.D.3
  • 32
    • 84857503105 scopus 로고    scopus 로고
    • The imminent role of protein engineering in synthetic biology
    • Foo J.L., Ching C.B., Chang M.W., Leong S.S. The imminent role of protein engineering in synthetic biology. Biotechnol Adv 2012, 30:541-549.
    • (2012) Biotechnol Adv , vol.30 , pp. 541-549
    • Foo, J.L.1    Ching, C.B.2    Chang, M.W.3    Leong, S.S.4
  • 33
    • 84865803086 scopus 로고    scopus 로고
    • Metabolically engineered Escherichia coli as a tool for the production of bioenergy and biochemicals from glycerol
    • Ganesh I., Ravikumar S., Hong S. Metabolically engineered Escherichia coli as a tool for the production of bioenergy and biochemicals from glycerol. Biotechnol Bioprocess Eng 2012, 17:671-678.
    • (2012) Biotechnol Bioprocess Eng , vol.17 , pp. 671-678
    • Ganesh, I.1    Ravikumar, S.2    Hong, S.3
  • 35
    • 84864955882 scopus 로고    scopus 로고
    • Engineering of microorganisms for the production of biofuels and perspectives based on systems metabolic engineering approaches
    • Jang Y.S., Park J.M., Choi S., Choi Y.J., Seung do Y., Cho J.H., et al. Engineering of microorganisms for the production of biofuels and perspectives based on systems metabolic engineering approaches. Biotechnol Adv 2012, 30:989-1000.
    • (2012) Biotechnol Adv , vol.30 , pp. 989-1000
    • Jang, Y.S.1    Park, J.M.2    Choi, S.3    Choi, Y.J.4    Seung do, Y.5    Cho, J.H.6
  • 36
    • 84859772410 scopus 로고    scopus 로고
    • Synthetic biology and the development of tools for metabolic engineering
    • Keasling J.D. Synthetic biology and the development of tools for metabolic engineering. Metab Eng 2012, 14:189-195.
    • (2012) Metab Eng , vol.14 , pp. 189-195
    • Keasling, J.D.1
  • 38
    • 84866160409 scopus 로고    scopus 로고
    • Comparative analysis of regulatory elements between Escherichia coli and Klebsiella pneumoniae by genome-wide transcription start site profiling
    • Kim D., Hong J.S., Qiu Y., Nagarajan H., Seo J.H., Cho B.K., et al. Comparative analysis of regulatory elements between Escherichia coli and Klebsiella pneumoniae by genome-wide transcription start site profiling. PLoS Genet 2012, 8:e1002867.
    • (2012) PLoS Genet , vol.8
    • Kim, D.1    Hong, J.S.2    Qiu, Y.3    Nagarajan, H.4    Seo, J.H.5    Cho, B.K.6
  • 39
    • 40649093316 scopus 로고    scopus 로고
    • Assessing the potential of mutational strategies to elicit new phenotypes in industrial strains
    • Klein-Marcuschamer D., Stephanopoulos G. Assessing the potential of mutational strategies to elicit new phenotypes in industrial strains. Proc Natl Acad Sci U S A 2008, 105:2319-2324.
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 2319-2324
    • Klein-Marcuschamer, D.1    Stephanopoulos, G.2
  • 40
    • 58149199728 scopus 로고    scopus 로고
    • A pause for thought along the co-translational folding pathway
    • Komar A.A. A pause for thought along the co-translational folding pathway. Trends Biochem Sci 2009, 34:16-24.
    • (2009) Trends Biochem Sci , vol.34 , pp. 16-24
    • Komar, A.A.1
  • 41
    • 0032699491 scopus 로고    scopus 로고
    • Synonymous codon substitutions affect ribosome traffic and protein folding during in vitro translation
    • Komar A.A., Lesnik T., Reiss C. Synonymous codon substitutions affect ribosome traffic and protein folding during in vitro translation. FEBS Lett 1999, 462:387-391.
    • (1999) FEBS Lett , vol.462 , pp. 387-391
    • Komar, A.A.1    Lesnik, T.2    Reiss, C.3
  • 42
    • 64849114915 scopus 로고    scopus 로고
    • Coding-sequence determinants of gene expression in Escherichia coli
    • Kudla G., Murray A.W., Tollervey D., Plotkin J.B. Coding-sequence determinants of gene expression in Escherichia coli. Science 2009, 324:255-258.
    • (2009) Science , vol.324 , pp. 255-258
    • Kudla, G.1    Murray, A.W.2    Tollervey, D.3    Plotkin, J.B.4
  • 43
    • 84860231100 scopus 로고    scopus 로고
    • The anti-Shine-Dalgarno sequence drives translational pausing and codon choice in bacteria
    • Li G.W., Oh E., Weissman J.S. The anti-Shine-Dalgarno sequence drives translational pausing and codon choice in bacteria. Nature 2012, 484:538-541.
    • (2012) Nature , vol.484 , pp. 538-541
    • Li, G.W.1    Oh, E.2    Weissman, J.S.3
  • 44
    • 79960614137 scopus 로고    scopus 로고
    • Fundamental relationship between operon organization and gene expression
    • Lim H.N., Lee Y., Hussein R. Fundamental relationship between operon organization and gene expression. Proc Natl Acad Sci U S A 2011, 108:10626-10631.
    • (2011) Proc Natl Acad Sci U S A , vol.108 , pp. 10626-10631
    • Lim, H.N.1    Lee, Y.2    Hussein, R.3
  • 45
    • 84876735071 scopus 로고    scopus 로고
    • Engineered Escherichia coli for simultaneous utilization of galactose and glucose
    • [in press-a]
    • Lim H.G., Seo S.W., Jung G.Y. Engineered Escherichia coli for simultaneous utilization of galactose and glucose. Bioresour Technol 2013, [in press-a] http://dx.doi.org/10.1016/j.biortech.2012.10.124.
    • (2013) Bioresour Technol
    • Lim, H.G.1    Seo, S.W.2    Jung, G.Y.3
  • 46
    • 84876471111 scopus 로고    scopus 로고
    • Refactoring redox cofactor regeneration for high-yield biocatalysis of glucose to butyric acid in Escherichia coli
    • [in press-b]
    • Lim J.H., Seo S.W., Kim S.Y., Jung G.Y. Refactoring redox cofactor regeneration for high-yield biocatalysis of glucose to butyric acid in Escherichia coli. Bioresour Technol 2013, [in press-b] http://dx.doi.org/10.1016/j.biortech.2012.09.091.
    • (2013) Bioresour Technol
    • Lim, J.H.1    Seo, S.W.2    Kim, S.Y.3    Jung, G.Y.4
  • 48
    • 77949311534 scopus 로고    scopus 로고
    • GTME for improved xylose fermentation of Saccharomyces cerevisiae
    • Liu H., Yan M., Lai C., Xu L., Ouyang P. gTME for improved xylose fermentation of Saccharomyces cerevisiae. Appl Biochem Biotechnol 2010, 160:574-582.
    • (2010) Appl Biochem Biotechnol , vol.160 , pp. 574-582
    • Liu, H.1    Yan, M.2    Lai, C.3    Xu, L.4    Ouyang, P.5
  • 49
    • 84869097100 scopus 로고    scopus 로고
    • An adaptor from translational to transcriptional control enables predictable assembly of complex regulation
    • Liu C.C., Qi L., Lucks J.B., Segall-Shapiro T.H., Wang D., Mutalik V.K., et al. An adaptor from translational to transcriptional control enables predictable assembly of complex regulation. Nat Methods 2012, 9:1088-1094.
    • (2012) Nat Methods , vol.9 , pp. 1088-1094
    • Liu, C.C.1    Qi, L.2    Lucks, J.B.3    Segall-Shapiro, T.H.4    Wang, D.5    Mutalik, V.K.6
  • 50
    • 84869476328 scopus 로고    scopus 로고
    • Ribozyme-based insulator parts buffer synthetic circuits from genetic context
    • Lou C., Stanton B., Chen Y.J., Munsky B., Voigt C.A. Ribozyme-based insulator parts buffer synthetic circuits from genetic context. Nat Biotechnol 2012, 30:1137-1142.
    • (2012) Nat Biotechnol , vol.30 , pp. 1137-1142
    • Lou, C.1    Stanton, B.2    Chen, Y.J.3    Munsky, B.4    Voigt, C.A.5
  • 51
    • 79957700542 scopus 로고    scopus 로고
    • Versatile RNA-sensing transcriptional regulators for engineering genetic networks
    • Lucks J.B., Qi L., Mutalik V.K., Wang D., Arkin A.P. Versatile RNA-sensing transcriptional regulators for engineering genetic networks. Proc Natl Acad Sci U S A 2011, 108:8617-8622.
    • (2011) Proc Natl Acad Sci U S A , vol.108 , pp. 8617-8622
    • Lucks, J.B.1    Qi, L.2    Mutalik, V.K.3    Wang, D.4    Arkin, A.P.5
  • 52
    • 84859776015 scopus 로고    scopus 로고
    • Synthetic biology: new strategies for directing design
    • Lynch S.A., Gill R.T. Synthetic biology: new strategies for directing design. Metab Eng 2012, 14:205-211.
    • (2012) Metab Eng , vol.14 , pp. 205-211
    • Lynch, S.A.1    Gill, R.T.2
  • 53
    • 70350334391 scopus 로고    scopus 로고
    • Computer-aided design of functional protein interactions
    • Mandell D.J., Kortemme T. Computer-aided design of functional protein interactions. Nat Chem Biol 2009, 5:797-807.
    • (2009) Nat Chem Biol , vol.5 , pp. 797-807
    • Mandell, D.J.1    Kortemme, T.2
  • 54
    • 84859737812 scopus 로고    scopus 로고
    • Methods and applications for assembling large DNA constructs
    • Merryman C., Gibson D.G. Methods and applications for assembling large DNA constructs. Metab Eng 2012, 14:196-204.
    • (2012) Metab Eng , vol.14 , pp. 196-204
    • Merryman, C.1    Gibson, D.G.2
  • 55
    • 84862167101 scopus 로고    scopus 로고
    • High-throughput enzyme evolution in Saccharomyces cerevisiae using a synthetic RNA switch
    • Michener J.K., Smolke C.D. High-throughput enzyme evolution in Saccharomyces cerevisiae using a synthetic RNA switch. Metab Eng 2012, 14:306-316.
    • (2012) Metab Eng , vol.14 , pp. 306-316
    • Michener, J.K.1    Smolke, C.D.2
  • 56
    • 25644445391 scopus 로고    scopus 로고
    • Libraries of synthetic stationary-phase and stress promoters as a tool for fine-tuning of expression of recombinant proteins in Escherichia coli
    • Miksch G., Bettenworth F., Friehs K., Flaschel E., Saalbach A., Twellmann T., et al. Libraries of synthetic stationary-phase and stress promoters as a tool for fine-tuning of expression of recombinant proteins in Escherichia coli. J Biotechnol 2005, 120:25-37.
    • (2005) J Biotechnol , vol.120 , pp. 25-37
    • Miksch, G.1    Bettenworth, F.2    Friehs, K.3    Flaschel, E.4    Saalbach, A.5    Twellmann, T.6
  • 57
    • 77950863739 scopus 로고    scopus 로고
    • Use of modular, synthetic scaffolds for improved production of glucaric acid in engineered E. coli
    • Moon T.S., Dueber J.E., Shiue E., Prather K.L. Use of modular, synthetic scaffolds for improved production of glucaric acid in engineered E. coli. Metab Eng 2010, 12:298-305.
    • (2010) Metab Eng , vol.12 , pp. 298-305
    • Moon, T.S.1    Dueber, J.E.2    Shiue, E.3    Prather, K.L.4
  • 58
    • 84859842558 scopus 로고    scopus 로고
    • Rationally designed families of orthogonal RNA regulators of translation
    • Mutalik V.K., Qi L., Guimaraes J.C., Lucks J.B., Arkin A.P. Rationally designed families of orthogonal RNA regulators of translation. Nat Chem Biol 2012, 8:447-454.
    • (2012) Nat Chem Biol , vol.8 , pp. 447-454
    • Mutalik, V.K.1    Qi, L.2    Guimaraes, J.C.3    Lucks, J.B.4    Arkin, A.P.5
  • 59
    • 77952611328 scopus 로고    scopus 로고
    • Mathematical modeling of translation initiation for the estimation of its efficiency to computationally design mRNA sequences with desired expression levels in prokaryotes
    • Na D., Lee S., Lee D. Mathematical modeling of translation initiation for the estimation of its efficiency to computationally design mRNA sequences with desired expression levels in prokaryotes. BMC Syst Biol 2010, 4:71.
    • (2010) BMC Syst Biol , vol.4 , pp. 71
    • Na, D.1    Lee, S.2    Lee, D.3
  • 60
    • 80052493200 scopus 로고    scopus 로고
    • Synthetic biology: integrated gene circuits
    • Nandagopal N., Elowitz M.B. Synthetic biology: integrated gene circuits. Science 2011, 333:1244-1248.
    • (2011) Science , vol.333 , pp. 1244-1248
    • Nandagopal, N.1    Elowitz, M.B.2
  • 61
    • 84863528678 scopus 로고    scopus 로고
    • Trigger factor slows co-translational folding through kinetic trapping while sterically protecting the nascent chain from aberrant cytosolic interactions
    • O'Brien E.P., Christodoulou J., Vendruscolo M., Dobson C.M. Trigger factor slows co-translational folding through kinetic trapping while sterically protecting the nascent chain from aberrant cytosolic interactions. J Am Chem Soc 2012, 134:10920-10932.
    • (2012) J Am Chem Soc , vol.134 , pp. 10920-10932
    • O'Brien, E.P.1    Christodoulou, J.2    Vendruscolo, M.3    Dobson, C.M.4
  • 62
    • 33947152402 scopus 로고    scopus 로고
    • Design of 5'-untranslated region variants for tunable expression in Escherichia coli
    • Park Y.S., Seo S.W., Hwang S., Chu H.S., Ahn J.H., Kim T.W., et al. Design of 5'-untranslated region variants for tunable expression in Escherichia coli. Biochem Biophys Res Commun 2007, 356:136-141.
    • (2007) Biochem Biophys Res Commun , vol.356 , pp. 136-141
    • Park, Y.S.1    Seo, S.W.2    Hwang, S.3    Chu, H.S.4    Ahn, J.H.5    Kim, T.W.6
  • 63
    • 33747078696 scopus 로고    scopus 로고
    • Combinatorial engineering of intergenic regions in operons tunes expression of multiple genes
    • Pfleger B.F., Pitera D.J., Smolke C.D., Keasling J.D. Combinatorial engineering of intergenic regions in operons tunes expression of multiple genes. Nat Biotechnol 2006, 24:1027-1032.
    • (2006) Nat Biotechnol , vol.24 , pp. 1027-1032
    • Pfleger, B.F.1    Pitera, D.J.2    Smolke, C.D.3    Keasling, J.D.4
  • 64
    • 84867389802 scopus 로고    scopus 로고
    • RNA processing enables predictable programming of gene expression
    • Qi L., Haurwitz R.E., Shao W., Doudna J.A., Arkin A.P. RNA processing enables predictable programming of gene expression. Nat Biotechnol 2012, 30:1002-1006.
    • (2012) Nat Biotechnol , vol.30 , pp. 1002-1006
    • Qi, L.1    Haurwitz, R.E.2    Shao, W.3    Doudna, J.A.4    Arkin, A.P.5
  • 65
    • 79958264719 scopus 로고    scopus 로고
    • GAP promoter library for fine-tuning of gene expression in Pichia pastoris
    • Qin X., Qian J., Yao G., Zhuang Y., Zhang S., Chu J. GAP promoter library for fine-tuning of gene expression in Pichia pastoris. Appl Environ Microbiol 2011, 77:3600-3608.
    • (2011) Appl Environ Microbiol , vol.77 , pp. 3600-3608
    • Qin, X.1    Qian, J.2    Yao, G.3    Zhuang, Y.4    Zhang, S.5    Chu, J.6
  • 66
    • 0030668749 scopus 로고    scopus 로고
    • Stromal concentrations of coenzyme A and its esters are insufficient to account for rates of chloroplast fatty acid synthesis: evidence for substrate channelling within the chloroplast fatty acid synthase
    • Roughan P.G. Stromal concentrations of coenzyme A and its esters are insufficient to account for rates of chloroplast fatty acid synthesis: evidence for substrate channelling within the chloroplast fatty acid synthase. Biochem J 1997, 327(Pt 1):267-273.
    • (1997) Biochem J , vol.327 , Issue.PART 1 , pp. 267-273
    • Roughan, P.G.1
  • 67
    • 33645546618 scopus 로고    scopus 로고
    • A synthetic promoter library for constitutive gene expression in Lactobacillus plantarum
    • Rud I., Jensen P.R., Naterstad K., Axelsson L. A synthetic promoter library for constitutive gene expression in Lactobacillus plantarum. Microbiology 2006, 152:1011-1019.
    • (2006) Microbiology , vol.152 , pp. 1011-1019
    • Rud, I.1    Jensen, P.R.2    Naterstad, K.3    Axelsson, L.4
  • 68
    • 70349964350 scopus 로고    scopus 로고
    • Automated design of synthetic ribosome binding sites to control protein expression
    • Salis H.M., Mirsky E.A., Voigt C.A. Automated design of synthetic ribosome binding sites to control protein expression. Nat Biotechnol 2009, 27:946-950.
    • (2009) Nat Biotechnol , vol.27 , pp. 946-950
    • Salis, H.M.1    Mirsky, E.A.2    Voigt, C.A.3
  • 69
    • 84865281539 scopus 로고    scopus 로고
    • Rational, combinatorial, and genomic approaches for engineering l-tyrosine production in Escherichia coli
    • Santos C.N., Xiao W., Stephanopoulos G. Rational, combinatorial, and genomic approaches for engineering l-tyrosine production in Escherichia coli. Proc Natl Acad Sci U S A 2012, 109:13538-13543.
    • (2012) Proc Natl Acad Sci U S A , vol.109 , pp. 13538-13543
    • Santos, C.N.1    Xiao, W.2    Stephanopoulos, G.3
  • 70
    • 70349316480 scopus 로고    scopus 로고
    • Quantitative correlation between mRNA secondary structure around the region downstream of the initiation codon and translational efficiency in Escherichia coli
    • Seo S.W., Yang J., Jung G.Y. Quantitative correlation between mRNA secondary structure around the region downstream of the initiation codon and translational efficiency in Escherichia coli. Biotechnol Bioeng 2009, 104:611-616.
    • (2009) Biotechnol Bioeng , vol.104 , pp. 611-616
    • Seo, S.W.1    Yang, J.2    Jung, G.Y.3
  • 71
    • 84861043748 scopus 로고    scopus 로고
    • Synthetic regulatory tools for microbial engineering
    • Seo S.W., Kim S.C., Jung G.Y. Synthetic regulatory tools for microbial engineering. Biotechnol Bioprocess Eng 2012, 17:1-7.
    • (2012) Biotechnol Bioprocess Eng , vol.17 , pp. 1-7
    • Seo, S.W.1    Kim, S.C.2    Jung, G.Y.3
  • 72
    • 84870851210 scopus 로고    scopus 로고
    • Predictive design of mRNA translation initiation region to control prokaryotic translation efficiency
    • Seo S.W., Yang J.S., Kim I., Yang J., Min B.E., Kim S., et al. Predictive design of mRNA translation initiation region to control prokaryotic translation efficiency. Metab Eng 2013, 15:67-74.
    • (2013) Metab Eng , vol.15 , pp. 67-74
    • Seo, S.W.1    Yang, J.S.2    Kim, I.3    Yang, J.4    Min, B.E.5    Kim, S.6
  • 73
    • 75749125061 scopus 로고    scopus 로고
    • Microbial production of fatty-acid-derived fuels and chemicals from plant biomass
    • Steen E.J., Kang Y., Bokinsky G., Hu Z., Schirmer A., McClure A., et al. Microbial production of fatty-acid-derived fuels and chemicals from plant biomass. Nature 2010, 463:559-562.
    • (2010) Nature , vol.463 , pp. 559-562
    • Steen, E.J.1    Kang, Y.2    Bokinsky, G.3    Hu, Z.4    Schirmer, A.5    McClure, A.6
  • 74
    • 84860803588 scopus 로고    scopus 로고
    • Refactoring the nitrogen fixation gene cluster from Klebsiella oxytoca
    • Temme K., Zhao D., Voigt C.A. Refactoring the nitrogen fixation gene cluster from Klebsiella oxytoca. Proc Natl Acad Sci U S A 2012, 109:7085-7090.
    • (2012) Proc Natl Acad Sci U S A , vol.109 , pp. 7085-7090
    • Temme, K.1    Zhao, D.2    Voigt, C.A.3
  • 75
    • 0035957047 scopus 로고    scopus 로고
    • Selective protein-protein interactions direct channeling of intermediates between polyketide synthase modules
    • Tsuji S.Y., Cane D.E., Khosla C. Selective protein-protein interactions direct channeling of intermediates between polyketide synthase modules. Biochemistry 2001, 40:2326-2331.
    • (2001) Biochemistry , vol.40 , pp. 2326-2331
    • Tsuji, S.Y.1    Cane, D.E.2    Khosla, C.3
  • 76
    • 68449103617 scopus 로고    scopus 로고
    • Stabilized gene duplication enables long-term selection-free heterologous pathway expression
    • Tyo K.E., Ajikumar P.K., Stephanopoulos G. Stabilized gene duplication enables long-term selection-free heterologous pathway expression. Nat Biotechnol 2009, 27:760-765.
    • (2009) Nat Biotechnol , vol.27 , pp. 760-765
    • Tyo, K.E.1    Ajikumar, P.K.2    Stephanopoulos, G.3
  • 77
    • 68949161807 scopus 로고    scopus 로고
    • Programming cells by multiplex genome engineering and accelerated evolution
    • Wang H.H., Isaacs F.J., Carr P.A., Sun Z.Z., Xu G., Forest C.R., et al. Programming cells by multiplex genome engineering and accelerated evolution. Nature 2009, 460:894-898.
    • (2009) Nature , vol.460 , pp. 894-898
    • Wang, H.H.1    Isaacs, F.J.2    Carr, P.A.3    Sun, Z.Z.4    Xu, G.5    Forest, C.R.6
  • 79
    • 84862822276 scopus 로고    scopus 로고
    • Application of metagenomic techniques in mining enzymes from microbial communities for biofuel synthesis
    • Xing M.N., Zhang X.Z., Huang H. Application of metagenomic techniques in mining enzymes from microbial communities for biofuel synthesis. Biotechnol Adv 2012, 30:920-929.
    • (2012) Biotechnol Adv , vol.30 , pp. 920-929
    • Xing, M.N.1    Zhang, X.Z.2    Huang, H.3
  • 80
    • 84859776222 scopus 로고    scopus 로고
    • The future of metabolic engineering and synthetic biology: towards a systematic practice
    • Yadav V.G., De Mey M., Lim C.G., Ajikumar P.K., Stephanopoulos G. The future of metabolic engineering and synthetic biology: towards a systematic practice. Metab Eng 2012, 14:233-241.
    • (2012) Metab Eng , vol.14 , pp. 233-241
    • Yadav, V.G.1    De Mey, M.2    Lim, C.G.3    Ajikumar, P.K.4    Stephanopoulos, G.5
  • 81
    • 84864590169 scopus 로고    scopus 로고
    • Rational engineering of enzyme allosteric regulation through sequence evolution analysis
    • Yang J.S., Seo S.W., Jang S., Jung G.Y., Kim S. Rational engineering of enzyme allosteric regulation through sequence evolution analysis. PLoS Comput Biol 2012, 8:e1002612.
    • (2012) PLoS Comput Biol , vol.8
    • Yang, J.S.1    Seo, S.W.2    Jang, S.3    Jung, G.Y.4    Kim, S.5
  • 82
    • 84879164975 scopus 로고    scopus 로고
    • Synthetic RNA devices to expedite the evolution of metabolite-producing microbes
    • Yang J., Seo S.W., Jang S., Shin S.I., Lim C.H., Roh T.Y., et al. Synthetic RNA devices to expedite the evolution of metabolite-producing microbes. Nat Commun 2013, 4:1413.
    • (2013) Nat Commun , vol.4 , pp. 1413
    • Yang, J.1    Seo, S.W.2    Jang, S.3    Shin, S.I.4    Lim, C.H.5    Roh, T.Y.6
  • 83
    • 79551690253 scopus 로고    scopus 로고
    • Folding at the birth of the nascent chain: coordinating translation with co-translational folding
    • Zhang G., Ignatova Z. Folding at the birth of the nascent chain: coordinating translation with co-translational folding. Curr Opin Struct Biol 2011, 21:25-31.
    • (2011) Curr Opin Struct Biol , vol.21 , pp. 25-31
    • Zhang, G.1    Ignatova, Z.2
  • 84
    • 62049083910 scopus 로고    scopus 로고
    • Transient ribosomal attenuation coordinates protein synthesis and co-translational folding
    • Zhang G., Hubalewska M., Ignatova Z. Transient ribosomal attenuation coordinates protein synthesis and co-translational folding. Nat Struct Mol Biol 2009, 16:274-280.
    • (2009) Nat Struct Mol Biol , vol.16 , pp. 274-280
    • Zhang, G.1    Hubalewska, M.2    Ignatova, Z.3
  • 85
    • 84859633048 scopus 로고    scopus 로고
    • Design of a dynamic sensor-regulator system for production of chemicals and fuels derived from fatty acids
    • Zhang F., Carothers J.M., Keasling J.D. Design of a dynamic sensor-regulator system for production of chemicals and fuels derived from fatty acids. Nat Biotechnol 2012, 30:354-359.
    • (2012) Nat Biotechnol , vol.30 , pp. 354-359
    • Zhang, F.1    Carothers, J.M.2    Keasling, J.D.3
  • 86
    • 84862796517 scopus 로고    scopus 로고
    • Advancements and future directions in enzyme technology for biomass conversion
    • Zhang Z., Donaldson A.A., Ma X. Advancements and future directions in enzyme technology for biomass conversion. Biotechnol Adv 2012, 30:913-919.
    • (2012) Biotechnol Adv , vol.30 , pp. 913-919
    • Zhang, Z.1    Donaldson, A.A.2    Ma, X.3
  • 87
    • 84862800714 scopus 로고    scopus 로고
    • Engineering the robustness of industrial microbes through synthetic biology
    • Zhu L., Zhu Y., Zhang Y., Li Y. Engineering the robustness of industrial microbes through synthetic biology. Trends Microbiol 2012, 20:94-101.
    • (2012) Trends Microbiol , vol.20 , pp. 94-101
    • Zhu, L.1    Zhu, Y.2    Zhang, Y.3    Li, Y.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.