-
1
-
-
79960697001
-
Organization of intracellular reactions with rationally designed RNA assemblies
-
Delebecque, C.J., Lindner, A.B., Silver, P.A. & Aldaye, F.A. Organization of intracellular reactions with rationally designed RNA assemblies. Science 333, 470-474 (2011).
-
(2011)
Science
, vol.333
, pp. 470-474
-
-
Delebecque, C.J.1
Lindner, A.B.2
Silver, P.A.3
Aldaye, F.A.4
-
2
-
-
0025074907
-
In vitro selection of RNA molecules that bind specifc ligands
-
Ellington, A.D. & Szostak, J.W. In vitro selection of RNA molecules that bind specifc ligands. Nature 346, 818-822 (1990).
-
(1990)
Nature
, vol.346
, pp. 818-822
-
-
Ellington, A.D.1
Szostak, J.W.2
-
3
-
-
0025194307
-
Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase
-
Tuerk, C. & Gold, L. Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase. Science 249, 505-510 (1990).
-
(1990)
Science
, vol.249
, pp. 505-510
-
-
Tuerk, C.1
Gold, L.2
-
5
-
-
0035656688
-
Non-coding RNA genes and the modern RNA world
-
Eddy, S.R. Non-coding RNA genes and the modern RNA world. Nat. Rev. Genet. 2, 919-929 (2001).
-
(2001)
Nat. Rev. Genet.
, vol.2
, pp. 919-929
-
-
Eddy, S.R.1
-
6
-
-
33646582649
-
RNA synthetic biology
-
Isaacs, F.J., Dwyer, D.J. & Collins, J.J. RNA synthetic biology. Nat. Biotechnol. 24, 545-554 (2006).
-
(2006)
Nat. Biotechnol.
, vol.24
, pp. 545-554
-
-
Isaacs, F.J.1
Dwyer, D.J.2
Collins, J.J.3
-
7
-
-
54249113318
-
Higher-order cellular information processing with synthetic RNA devices
-
Win, M.N. & Smolke, C.D. Higher-order cellular information processing with synthetic RNA devices. Science 322, 456-460 (2008).
-
(2008)
Science
, vol.322
, pp. 456-460
-
-
Win, M.N.1
Smolke, C.D.2
-
8
-
-
77957679279
-
Tracking, tuning, and terminating microbial physiology using synthetic riboregulators
-
Callura, J.M., Dwyer, D.J., Isaacs, F.J., Cantor, C.R. & Collins, J.J. Tracking, tuning, and terminating microbial physiology using synthetic riboregulators. Proc. Natl. Acad. Sci. USA 107, 15898-15903 (2010).
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 15898-15903
-
-
Callura, J.M.1
Dwyer, D.J.2
Isaacs, F.J.3
Cantor, C.R.4
Collins, J.J.5
-
9
-
-
3042741121
-
Engineered riboregulators enable post-transcriptional control of gene expression
-
Isaacs, F.J. et al. Engineered riboregulators enable post-transcriptional control of gene expression. Nat. Biotechnol. 22, 841-847 (2004).
-
(2004)
Nat. Biotechnol.
, vol.22
, pp. 841-847
-
-
Isaacs, F.J.1
-
10
-
-
53049107187
-
Engineering the spatial organization of metabolic enzymes: Mimicking nature's synergy
-
Conrado, R.J., Varner, J.D. & DeLisa, M.P. Engineering the spatial organization of metabolic enzymes: mimicking nature's synergy. Curr. Opin. Biotechnol. 19, 492-499 (2008).
-
(2008)
Curr. Opin. Biotechnol.
, vol.19
, pp. 492-499
-
-
Conrado, R.J.1
Varner, J.D.2
Delisa, M.P.3
-
11
-
-
77749264485
-
Spatially ordered dynamics of the bacterial carbon fxation machinery
-
Savage, D.F., Afonso, B., Chen, A.H. & Silver, P.A. Spatially ordered dynamics of the bacterial carbon fxation machinery. Science 327, 1258-1261 (2010).
-
(2010)
Science
, vol.327
, pp. 1258-1261
-
-
Savage, D.F.1
Afonso, B.2
Chen, A.H.3
Silver, P.A.4
-
12
-
-
0034009390
-
Signal transduction: Hanging on a scaffold
-
Burack, W.R. & Shaw, A.S. Signal transduction: hanging on a scaffold. Curr. Opin. Cell Biol. 12, 211-216 (2000).
-
(2000)
Curr. Opin. Cell Biol.
, vol.12
, pp. 211-216
-
-
Burack, W.R.1
Shaw, A.S.2
-
13
-
-
3042798454
-
Yeast telomerase RNA: A fexible scaffold for protein subunits
-
Zappulla, D.C. & Cech, T.R. Yeast telomerase RNA: a fexible scaffold for protein subunits. Proc. Natl. Acad. Sci. USA 101, 10024-10029 (2004).
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 10024-10029
-
-
Zappulla, D.C.1
Cech, T.R.2
-
14
-
-
72249119445
-
A nanostructure made of a bacterial noncoding RNA
-
Cayrol, B. et al. A nanostructure made of a bacterial noncoding RNA. J. Am. Chem. Soc. 131, 17270-17276 (2009).
-
(2009)
J. Am. Chem. Soc.
, vol.131
, pp. 17270-17276
-
-
Cayrol, B.1
-
15
-
-
79551593011
-
Nucleation of nuclear bodies by RNA
-
Shevtsov, S.P. & Dundr, M. Nucleation of nuclear bodies by RNA. Nat. Cell Biol. 13, 167-173 (2011).
-
(2011)
Nat. Cell Biol.
, vol.13
, pp. 167-173
-
-
Shevtsov, S.P.1
Dundr, M.2
-
16
-
-
0003064682
-
Reduction of dimensionality in biological diffusion processes
-
Adam, G. & Delbriick, M. Reduction of dimensionality in biological diffusion processes. Struct. Chem. Mol. Biol. 198-215 (1968).
-
(1968)
Struct. Chem. Mol. Biol.
, pp. 198-215
-
-
Adam, G.1
Delbriick, M.2
-
17
-
-
68449088806
-
Synthetic protein scaffolds provide modular control over metabolic fux
-
Dueber, J.E. et al. Synthetic protein scaffolds provide modular control over metabolic fux. Nat. Biotechnol. 27, 753-759 (2009).
-
(2009)
Nat. Biotechnol.
, vol.27
, pp. 753-759
-
-
Dueber, J.E.1
-
18
-
-
84859780045
-
Spatial organization of enzymes for metabolic engineering
-
Lee, H., DeLoache, W.C. & Dueber, J.E. Spatial organization of enzymes for metabolic engineering. Metab. Eng. 14, 242-251 (2012).
-
(2012)
Metab. Eng.
, vol.14
, pp. 242-251
-
-
Lee, H.1
Deloache, W.C.2
Dueber, J.E.3
-
19
-
-
0037436155
-
Rewiring MAP kinase pathways using alternative scaffold assembly mechanisms
-
Park, S.-H., Zarrinpar, A. & Lim, W.A. Rewiring MAP kinase pathways using alternative scaffold assembly mechanisms. Science 299, 1061-1064 (2003).
-
(2003)
Science
, vol.299
, pp. 1061-1064
-
-
Park, S.-H.1
Zarrinpar, A.2
Lim, W.A.3
-
20
-
-
78651486207
-
Insulation of a synthetic hydrogen metabolism circuit in bacteria
-
Agapakis, C.M. et al. Insulation of a synthetic hydrogen metabolism circuit in bacteria. J. Biol. Eng. 4, 3-15 (2010).
-
(2010)
J. Biol. Eng.
, vol.4
, pp. 3-15
-
-
Agapakis, C.M.1
-
21
-
-
77950863739
-
Use of modular, synthetic scaffolds for improved production of glucaric acid in engineered E. coli
-
Moon, T.S., Dueber, J.E., Shiue, E. & Prather, K.L.J. Use of modular, synthetic scaffolds for improved production of glucaric acid in engineered E. coli. Metab. Eng. 12, 298-305 (2010).
-
(2010)
Metab. Eng.
, vol.12
, pp. 298-305
-
-
Moon, T.S.1
Dueber, J.E.2
Shiue, E.3
Prather, K.L.J.4
-
22
-
-
84863229940
-
DNA-guided assembly of biosynthetic pathways promotes improved catalytic effciency
-
Conrado, R.J. et al. DNA-guided assembly of biosynthetic pathways promotes improved catalytic effciency. Nucleic Acids Res. 40, 1879-1889 (2011).
-
(2011)
Nucleic Acids Res.
, vol.40
, pp. 1879-1889
-
-
Conrado, R.J.1
-
23
-
-
4644326818
-
Bottom-up assembly of RNA arrays and superstructures as potential parts in nanotechnology
-
Shu, D., Moll, W.-D., Deng, Z., Mao, C. & Guo, P. Bottom-up assembly of RNA arrays and superstructures as potential parts in nanotechnology. Nano Lett. 4, 1717-1723 (2004).
-
(2004)
Nano Lett.
, vol.4
, pp. 1717-1723
-
-
Shu, D.1
Moll, W.-D.2
Deng, Z.3
Mao, C.4
Guo, P.5
-
24
-
-
78649985789
-
The emerging feld of RNA nanotechnology
-
Guo, P. The emerging feld of RNA nanotechnology. Nat. Nanotechnol. 5, 833-842 (2010).
-
(2010)
Nat. Nanotechnol.
, vol.5
, pp. 833-842
-
-
Guo, P.1
-
25
-
-
77956422639
-
In vitro assembly of cubic RNA-based scaffolds designed in silico
-
Afonin, K.A. et al. In vitro assembly of cubic RNA-based scaffolds designed in silico. Nat. Nanotechnol. 5, 676-682 (2010).
-
(2010)
Nat. Nanotechnol.
, vol.5
, pp. 676-682
-
-
Afonin, K.A.1
-
26
-
-
0042622372
-
RNAsoft: A suite of RNA secondary structure prediction and design software tools
-
Andronescu, M., Aguirre-Hernandez, R., Condon, A. & Hoos, H.H. RNAsoft: a suite of RNA secondary structure prediction and design software tools. Nucleic Acids Res. 31, 3416-3422 (2003).
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3416-3422
-
-
Andronescu, M.1
Aguirre-Hernandez, R.2
Condon, A.3
Hoos, H.H.4
-
27
-
-
37849019313
-
Structural basis for the coevolution of a viral RNA-protein complex
-
Chao, J.A., Patskovsky, Y., Almo, S.C. & Singer, R.H. Structural basis for the coevolution of a viral RNA-protein complex. Nat. Struct. Mol. Biol. 15, 103-105 (2008).
-
(2008)
Nat. Struct. Mol. Biol.
, vol.15
, pp. 103-105
-
-
Chao, J.A.1
Patskovsky, Y.2
Almo, S.C.3
Singer, R.H.4
-
28
-
-
0031951789
-
Crystal structure of an RNA aptamer-protein complex at 2.8 A resolution
-
Convery, M.A. et al. Crystal structure of an RNA aptamer-protein complex at 2.8 A resolution. Nat. Struct. Biol. 5, 133-139 (1998).
-
(1998)
Nat. Struct. Biol.
, vol.5
, pp. 133-139
-
-
Convery, M.A.1
-
29
-
-
0035933720
-
Translational repression and specifc RNA binding by the coat protein of the Pseudomonas phage PP7
-
Lim, F., Downey, T.P. & Peabody, D.S. Translational repression and specifc RNA binding by the coat protein of the Pseudomonas phage PP7. J. Biol. Chem. 276, 22507-22513 (2001).
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 22507-22513
-
-
Lim, F.1
Downey, T.P.2
Peabody, D.S.3
-
30
-
-
0034650498
-
RNA aptamers for the MS2 bacteriophage coat protein and the wild-type RNA operator have similar solution behaviour
-
Parrott, A.M. et al. RNA aptamers for the MS2 bacteriophage coat protein and the wild-type RNA operator have similar solution behaviour. Nucleic Acids Res. 28, 489-497 (2000).
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 489-497
-
-
Parrott, A.M.1
-
31
-
-
3843126332
-
RNA dynamics in live Escherichia coli cells
-
Golding, I. & Cox, E.C. RNA dynamics in live Escherichia coli cells. Proc. Natl. Acad. Sci. USA 101, 11310-11315 (2004).
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 11310-11315
-
-
Golding, I.1
Cox, E.C.2
-
32
-
-
34250191761
-
RNA visualization in live bacterial cells using fuorescent protein complementation
-
Valencia-Burton, M., McCullough, R.M., Cantor, C.R. & Broude, N.E. RNA visualization in live bacterial cells using fuorescent protein complementation. Nat. Methods 4, 421-427 (2007).
-
(2007)
Nat. Methods
, vol.4
, pp. 421-427
-
-
Valencia-Burton, M.1
McCullough, R.M.2
Cantor, C.R.3
Broude, N.E.4
-
33
-
-
52949116414
-
Assembling materials with DNA as the guide
-
Aldaye, F.A., Palmer, A.L. & Sleiman, H.F. Assembling materials with DNA as the guide. Science 321, 1795-1799 (2008).
-
(2008)
Science
, vol.321
, pp. 1795-1799
-
-
Aldaye, F.A.1
Palmer, A.L.2
Sleiman, H.F.3
-
34
-
-
36949030704
-
An overview of structural DNA nanotechnology
-
Seeman, N.C. An overview of structural DNA nanotechnology. Mol. Biotechnol. 37, 246-257 (2007).
-
(2007)
Mol. Biotechnol.
, vol.37
, pp. 246-257
-
-
Seeman, N.C.1
-
35
-
-
33746281403
-
Approaching the limit: Can one DNA oligonucleotide assemble into large nanostructures?
-
Liu, H., Chen, Y., He, Y., Ribbe, A.E. & Mao, C. Approaching the limit: can one DNA oligonucleotide assemble into large nanostructures? Angew. Chem. Int. Ed. Engl. 45, 1942-1945 (2006).
-
(2006)
Angew. Chem. Int. Ed. Engl.
, vol.45
, pp. 1942-1945
-
-
Liu, H.1
Chen, Y.2
He, Y.3
Ribbe, A.E.4
Mao, C.5
-
36
-
-
28844504657
-
Two-dimensional (2D) DNA crystals assembled from two DNA strands
-
Liu, H., He, Y., Ribbe, A.E. & Mao, C. Two-dimensional (2D) DNA crystals assembled from two DNA strands. Biomacromolecules 6, 2943-2945 (2005).
-
(2005)
Biomacromolecules
, vol.6
, pp. 2943-2945
-
-
Liu, H.1
He, Y.2
Ribbe, A.E.3
Mao, C.4
-
37
-
-
38349121586
-
Programming biomolecular self-assembly pathways
-
Yin, P., Choi, H.M.T., Calvert, C.R. & Pierce, N.A. Programming biomolecular self-assembly pathways. Nature 451, 318-322 (2008).
-
(2008)
Nature
, vol.451
, pp. 318-322
-
-
Yin, P.1
Choi, H.M.T.2
Calvert, C.R.3
Pierce, N.A.4
-
38
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
Zuker, M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 31, 3406-3415 (2003).
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3406-3415
-
-
Zuker, M.1
-
39
-
-
78149355812
-
NUPACK: Analysis and design of nucleic acid systems
-
Zadeh, J.N. et al. NUPACK: analysis and design of nucleic acid systems. J. Comput. Chem. 32, 170-173 (2011).
-
(2011)
J. Comput. Chem.
, vol.32
, pp. 170-173
-
-
Zadeh, J.N.1
-
40
-
-
70349964350
-
Automated design of synthetic ribosome binding sites to control protein expression
-
Salis, H.M., Mirsky, E.A. & Voigt, C.A. Automated design of synthetic ribosome binding sites to control protein expression. Nat. Biotechnol. 27, 946-950 (2009).
-
(2009)
Nat. Biotechnol.
, vol.27
, pp. 946-950
-
-
Salis, H.M.1
Mirsky, E.A.2
Voigt, C.A.3
-
41
-
-
77649201708
-
Expression profling of microRNA using real-time quantitative PCR, how to use it and what is available
-
Benes, V. & Castoldi, M. Expression profling of microRNA using real-time quantitative PCR, how to use it and what is available. Methods 50, 244-249 (2010).
-
(2010)
Methods
, vol.50
, pp. 244-249
-
-
Benes, V.1
Castoldi, M.2
-
42
-
-
0037315564
-
Global RNA half-life analysis in Escherichia coli reveals positional patterns of transcript degradation
-
Selinger, D.W. Global RNA half-life analysis in Escherichia coli reveals positional patterns of transcript degradation. Genome Res. 13, 216-223 (2003).
-
(2003)
Genome Res.
, vol.13
, pp. 216-223
-
-
Selinger, D.W.1
-
43
-
-
50849083181
-
Quality control of bacterial mRNA decoding and decay
-
Richards, J., Sundermeier, T., Svetlanov, A. & Karzai, A.W. Quality control of bacterial mRNA decoding and decay. Biochimica et Biophysica Acta. 1779, 574-582 (2008).
-
(2008)
Biochimica et Biophysica Acta.
, vol.1779
, pp. 574-582
-
-
Richards, J.1
Sundermeier, T.2
Svetlanov, A.3
Karzai, A.W.4
-
44
-
-
0029129682
-
Use of ultra stable UNCG tetraloop hairpins to fold RNA structures: Thermodynamic and spectroscopic applications
-
Molinaro, M. & Tinoco, I. Use of ultra stable UNCG tetraloop hairpins to fold RNA structures: thermodynamic and spectroscopic applications. Nucleic Acids Res. 23, 3056-3063 (1995).
-
(1995)
Nucleic Acids Res.
, vol.23
, pp. 3056-3063
-
-
Molinaro, M.1
Tinoco, I.2
-
45
-
-
31344474305
-
Strategies for protein coexpression in Escherichia coli
-
Tolia, N.H. & Joshua-Tor, L. Strategies for protein coexpression in Escherichia coli. Nat. Methods 3, 55-64 (2006).
-
(2006)
Nat. Methods
, vol.3
, pp. 55-64
-
-
Tolia, N.H.1
Joshua-Tor, L.2
-
46
-
-
1542301827
-
Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
-
Vandesompele, J. et al. Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol. 3, 1-12 (2002).
-
(2002)
Genome Biol.
, vol.3
, pp. 1-12
-
-
Vandesompele, J.1
|