-
1
-
-
35448990907
-
A modular and extensible RNA-based gene-regulatory platform for engineering cellular function
-
Win MN, Smolke CD (2007) A modular and extensible RNA-based gene-regulatory platform for engineering cellular function. Proc Natl Acad Sci USA 104:14283-14288.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 14283-14288
-
-
Win, M.N.1
Smolke, C.D.2
-
2
-
-
33747078696
-
Combinatorial engineering of intergenic regions in operons tunes expression of multiple genes
-
DOI 10.1038/nbt1226, PII NBT1226
-
Pfleger BF, Pitera DJ, Smolke CD, Keasling JD (2006) Combinatorial engineering of intergenic regions in operons tunes expression of multiple genes. Nat Biotechnol 24:1027-1032. (Pubitemid 44215398)
-
(2006)
Nature Biotechnology
, vol.24
, Issue.8
, pp. 1027-1032
-
-
Pfleger, B.F.1
Pitera, D.J.2
Smolke, C.D.3
Keasling, J.D.4
-
3
-
-
77957679279
-
Tracking, tuning, and terminating microbial physiology using synthetic riboregulators
-
Callura JM, Dwyer DJ, Isaacs FJ, Cantor CR, Collins JJ (2010) Tracking, tuning, and terminating microbial physiology using synthetic riboregulators. Proc Natl Acad Sci USA 107:15898-15903.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 15898-15903
-
-
Callura, J.M.1
Dwyer, D.J.2
Isaacs, F.J.3
Cantor, C.R.4
Collins, J.J.5
-
4
-
-
77952507419
-
Reprogramming bacteria to seek and destroy an herbicide
-
Sinha J, Reyes SJ, Gallivan JP (2010) Reprogramming bacteria to seek and destroy an herbicide. Nat Chem Biol 6:464-470.
-
(2010)
Nat Chem Biol
, vol.6
, pp. 464-470
-
-
Sinha, J.1
Reyes, S.J.2
Gallivan, J.P.3
-
6
-
-
0037337009
-
RNA sequences that work as transcriptional activating regions
-
DOI 10.1093/nar/gkg227
-
Saha S, Ansari AZ, Jarrell KA, Ptashne M (2003) RNA sequences that work as transcriptional activating regions. Nucleic Acids Res 31:1565-1570. (Pubitemid 36304918)
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.5
, pp. 1565-1570
-
-
Saha, S.1
Ansari, A.Z.2
Jarell, K.A.3
Ptashne, M.4
-
7
-
-
62649171253
-
Frameworks for programming biological function through RNA parts and devices
-
Win MN, Liang JC, Smolke CD (2009) Frameworks for programming biological function through RNA parts and devices. Chem Biol 16:298-310.
-
(2009)
Chem Biol
, vol.16
, pp. 298-310
-
-
Win, M.N.1
Liang, J.C.2
Smolke, C.D.3
-
8
-
-
34447310821
-
A universal RNAi-based logic evaluator that operates in mammalian cells
-
DOI 10.1038/nbt1307, PII NBT1307
-
Rinaudo K, et al. (2007) A universal RNAi-based logic evaluator that operates in mammalian cells. Nat Biotechnol 25:795-801. (Pubitemid 47052185)
-
(2007)
Nature Biotechnology
, vol.25
, Issue.7
, pp. 795-801
-
-
Rinaudo, K.1
Bleris, L.2
Maddamsetti, R.3
Subramanian, S.4
Weiss, R.5
Benenson, Y.6
-
9
-
-
2542601538
-
A theophylline responsive riboswitch based on helix slipping controls gene expression in vivo
-
DOI 10.1093/nar/gkh321
-
Suess B, Fink B, Berens C, Stentz R, Hillen W (2004) A theophylline responsive riboswitch based on helix slipping controls gene expression in vivo. Nucleic Acids Res 32:1610-1614. (Pubitemid 38854758)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.4
, pp. 1610-1614
-
-
Suess, B.1
Fink, B.2
Berens, C.3
Stentz, R.4
Hillen, W.5
-
10
-
-
3042741121
-
Engineered riboregulators enable post-transcriptional control of gene expression
-
DOI 10.1038/nbt986
-
Isaacs FJ, et al. (2004) Engineered riboregulators enable post-transcriptional control of gene expression. Nat Biotechnol 22:841-847. (Pubitemid 38886602)
-
(2004)
Nature Biotechnology
, vol.22
, Issue.7
, pp. 841-847
-
-
Isaacs, F.J.1
Dwyer, D.J.2
Ding, C.3
Pervouchine, D.D.4
Cantor, C.R.5
Collins, J.J.6
-
11
-
-
21444457242
-
Programmable ligand-controlled riboregulators of eukaryotic gene expression
-
DOI 10.1038/nbt1069
-
Bayer TS, Smolke CD (2005) Programmable ligand-controlled riboregulators of eukaryotic gene expression. Nat Biotechnol 23:337-343. (Pubitemid 41094422)
-
(2005)
Nature Biotechnology
, vol.23
, Issue.3
, pp. 337-343
-
-
Bayer, T.S.1
Smolke, C.D.2
-
12
-
-
66249088017
-
The second wave of synthetic biology: From modules to systems
-
Purnick PEM, Weiss R (2009) The second wave of synthetic biology: from modules to systems. Nat Rev Mol Cell Biol 10:410-422.
-
(2009)
Nat Rev Mol Cell Biol
, vol.10
, pp. 410-422
-
-
Purnick, P.E.M.1
Weiss, R.2
-
13
-
-
66349125024
-
Synthetic gene networks that count
-
Friedland AE, et al. (2009) Synthetic gene networks that count. Science 324:1199-1202.
-
(2009)
Science
, vol.324
, pp. 1199-1202
-
-
Friedland, A.E.1
-
15
-
-
27144527479
-
Regulation of bacterial gene expression by riboswitches
-
DOI 10.1146/annurev.micro.59.030804.121336
-
Winkler WC, Breaker RR (2005) Regulation of bacterial gene expression by riboswitches. Annu Rev Microbiol 59:487-517. (Pubitemid 41507440)
-
(2005)
Annual Review of Microbiology
, vol.59
, pp. 487-517
-
-
Winkler, W.C.1
Breaker, R.R.2
-
16
-
-
0034021323
-
Antisense RNA-mediated transcriptional attenuation: An in vitro study of plasmid pT181
-
DOI 10.1046/j.1365-2958.2000.01813.x
-
Brantl S, Wagner EGH (2000) Antisense RNA-mediated transcriptional attenuation: An in vitro study of plasmid pT181. Mol Microbiol 35:1469-1482. (Pubitemid 30175522)
-
(2000)
Molecular Microbiology
, vol.35
, Issue.6
, pp. 1469-1482
-
-
Brantl, S.1
Wagner, E.G.H.2
-
17
-
-
33847188873
-
Antisense RNA-mediated transcriptional attenuation in plasmid pIP501: The simultaneous interaction between two complementary loop pairs is required for efficient inhibition by the antisense RNA
-
Heidrich N, Brantl S (2007) Antisense RNA-mediated transcriptional attenuation in plasmid pIP501: The simultaneous interaction between two complementary loop pairs is required for efficient inhibition by the antisense RNA. Microbiology 153:420-427.
-
(2007)
Microbiology
, vol.153
, pp. 420-427
-
-
Heidrich, N.1
Brantl, S.2
-
19
-
-
24044543111
-
A network of orthogonal ribosome x mRNA pairs
-
Rackham O, Chin JW (2005) A network of orthogonal ribosome x mRNA pairs. Nat Chem Biol 1:159-166.
-
(2005)
Nat Chem Biol
, vol.1
, pp. 159-166
-
-
Rackham, O.1
Chin, J.W.2
-
20
-
-
54249113318
-
Higher-order cellular information processing with synthetic RNA devices
-
Win MN, Smolke CD (2008) Higher-order cellular information processing with synthetic RNA devices. Science 322:456-460.
-
(2008)
Science
, vol.322
, pp. 456-460
-
-
Win, M.N.1
Smolke, C.D.2
-
21
-
-
68349141373
-
RNA synthetic biology inspired from bacteria: Construction of transcription attenuators under antisense regulation
-
Dawid A, Cayrol B, Isambert H (2009) RNA synthetic biology inspired from bacteria: Construction of transcription attenuators under antisense regulation. Phys Biol 6:025007.
-
(2009)
Phys Biol
, vol.6
, pp. 025007
-
-
Dawid, A.1
Cayrol, B.2
Isambert, H.3
-
22
-
-
0036233405
-
An antisense RNA-mediated transcriptional attenuation mechanism functions in Escherichia coli
-
DOI 10.1128/JB.184.10.2740-2747.2002
-
Brantl S, Wagner EGH (2002) An antisense RNA-mediated transcriptional attenuation mechanism functions in Escherichia coli. J Bacteriol 184:2740-2747. (Pubitemid 34457041)
-
(2002)
Journal of Bacteriology
, vol.184
, Issue.10
, pp. 2740-2747
-
-
Brantl, S.1
Wagner, E.G.H.2
-
23
-
-
30544433196
-
Engineering and characterization of a superfolder green fluorescent protein
-
DOI 10.1038/nbt1172, PII NBT1172
-
Pédelacq J-D, Cabantous S, Tran T, Terwilliger TC, Waldo GS (2006) Engineering and characterization of a superfolder green fluorescent protein. Nat Biotechnol 24:79-88. (Pubitemid 43083170)
-
(2006)
Nature Biotechnology
, vol.24
, Issue.1
, pp. 79-88
-
-
Pedelacq, J.-D.1
Cabantous, S.2
Tran, T.3
Terwilliger, T.C.4
Waldo, G.S.5
-
24
-
-
0034331201
-
Progression of a loop-loop complex to a four-way junction is crucial for the activity of a regulatory antisense RNA
-
Kolb FA, et al. (2000) Progression of a loop-loop complex to a four-way junction is crucial for the activity of a regulatory antisense RNA. EMBO J 19:5905-5915.
-
(2000)
EMBO J
, vol.19
, pp. 5905-5915
-
-
Kolb, F.A.1
-
25
-
-
0035827221
-
Four-way junctions in antisense RNA-mRNA complexes involved in plasmid replication control: A common theme?
-
DOI 10.1006/jmbi.2001.4677
-
Kolb FA, et al. (2001) Four-way junctions in antisense RNA-mRNA complexes involved in plasmid replication control: A common theme? J Mol Biol 309:605-614. (Pubitemid 32595095)
-
(2001)
Journal of Molecular Biology
, vol.309
, Issue.3
, pp. 605-614
-
-
Kolb, F.A.1
Westhof, E.2
Ehresmann, B.3
Ehresmann, C.4
Wagner, E.G.H.5
Romby, P.6
-
26
-
-
0036761417
-
RNA loop-loop interactions as dynamic functional motifs
-
DOI 10.1016/S0300-9084(02)01401-3, PII S0300908402014013
-
Brunel C, Marquet R, Romby P, Ehresmann C (2002) RNA loop-loop interactions as dynamic functional motifs. Biochimie 84:925-944. (Pubitemid 35422919)
-
(2002)
Biochimie
, vol.84
, Issue.9
, pp. 925-944
-
-
Brunel, C.1
Marquet, R.2
Romby, P.3
Ehresmann, C.4
-
27
-
-
0033579543
-
Antisense RNA regulation in prokaryotes: Rapid RNA/RNA interaction facilitated by a general U-turn loop structure
-
DOI 10.1006/jmbi.1999.3306
-
Franch T, Petersen M, Wagner EGH, Jacobsen JP, Gerdes K (1999) Antisense RNA regulation in prokaryotes: Rapid RNA/RNA interaction facilitated by a general U-turn loop structure. J Mol Biol 294:1115-1125. (Pubitemid 30008785)
-
(1999)
Journal of Molecular Biology
, vol.294
, Issue.5
, pp. 1115-1125
-
-
Franch, T.1
Petersen, M.2
Wagner, E.G.H.3
Jacobsen, J.P.4
Gerdes, K.5
-
28
-
-
0030861452
-
2 regulatory elements
-
DOI 10.1093/nar/25.6.1203
-
Lutz R, Bujard H (1997) Independent and tight regulation of transcriptional units in Escherichia coli via the LacR/O, the TetR/O and AraC/I1-I2 regulatory elements. Nucleic Acids Res 25:1203-1210. (Pubitemid 27303212)
-
(1997)
Nucleic Acids Research
, vol.25
, Issue.6
, pp. 1203-1210
-
-
Lutz, R.1
Bujard, H.2
-
29
-
-
33749986680
-
Tandem riboswitch architectures exhibit complex gene control functions
-
DOI 10.1126/science.1130716
-
Sudarsan N, et al. (2006) Tandem riboswitch architectures exhibit complex gene control functions. Science 314:300-304. (Pubitemid 44571975)
-
(2006)
Science
, vol.314
, Issue.5797
, pp. 300-304
-
-
Sudarsan, N.1
Hammond, M.C.2
Block, K.F.3
Welz, R.4
Barrick, J.E.5
Roth, A.6
Breaker, R.R.7
-
31
-
-
67650666435
-
Modelling amorphous computations with transcription networks
-
Simpson ZB, Tsai TL, Nguyen N, Chen X, Ellington AD (2009) Modelling amorphous computations with transcription networks. J R Soc Interface 6:S523-533.
-
(2009)
J R Soc Interface
, vol.6
-
-
Simpson, Z.B.1
Tsai, T.L.2
Nguyen, N.3
Chen, X.4
Ellington, A.D.5
-
32
-
-
78651397316
-
Robust multicellular computing using genetically encoded NOR gates and chemical 'wires'
-
Tamsir A, Tabor JJ, Voigt CA (2011) Robust multicellular computing using genetically encoded NOR gates and chemical 'wires'. Nature 469:212-215.
-
(2011)
Nature
, vol.469
, pp. 212-215
-
-
Tamsir, A.1
Tabor, J.J.2
Voigt, C.A.3
-
33
-
-
2442626706
-
Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure
-
DOI 10.1073/pnas.0401799101
-
Mathews DH, et al. (2004) Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure. Proc Natl Acad Sci USA 101:7287-7292. (Pubitemid 38638025)
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, Issue.19
, pp. 7287-7292
-
-
Mathews, D.H.1
Disney, M.D.2
Childs, J.L.3
Schroeder, S.J.4
Zuker, M.5
Turner, D.H.6
-
34
-
-
0043009734
-
Sequence elements outside the hammerhead ribozyme catalytic core enable intracellular activity
-
DOI 10.1038/nsb959
-
Khvorova A, Lescoute A, Westhof E, Jayasena SD (2003) Sequence elements outside the hammerhead ribozyme catalytic core enable intracellular activity. Nat Struct Biol 10:708-712. (Pubitemid 37052408)
-
(2003)
Nature Structural Biology
, vol.10
, Issue.9
, pp. 708-712
-
-
Khvorova, A.1
Lescoute, A.2
Westhof, E.3
Jayasena, S.D.4
-
35
-
-
0038392724
-
Response delays and the structure of transcription networks
-
DOI 10.1016/S0022-2836(03)00506-0
-
Rosenfeld N, Alon U (2003) Response delays and the structure of transcription networks. J Mol Biol 329:645-654. (Pubitemid 36629360)
-
(2003)
Journal of Molecular Biology
, vol.329
, Issue.4
, pp. 645-654
-
-
Rosenfeld, N.1
Alon, U.2
-
36
-
-
54049118804
-
A quantitative comparison of sRNA-based and protein-based gene regulation
-
Mehta P, Goyal S, Wingreen NS (2008) A quantitative comparison of sRNA-based and protein-based gene regulation. Mol Syst Biol 4(221):1-10.
-
(2008)
Mol Syst Biol
, vol.4
, Issue.221
, pp. 1-10
-
-
Mehta, P.1
Goyal, S.2
Wingreen, N.S.3
-
37
-
-
56949108549
-
Toward scalable parts families for predictable design of biological circuits
-
Lucks JB, Qi L, Whitaker WR, Arkin AP (2008) Toward scalable parts families for predictable design of biological circuits. Curr Opin Microbiol 11:567-573.
-
(2008)
Curr Opin Microbiol
, vol.11
, pp. 567-573
-
-
Lucks, J.B.1
Qi, L.2
Whitaker, W.R.3
Arkin, A.P.4
-
38
-
-
46949110597
-
Setting the standard in synthetic biology
-
Arkin AP (2008) Setting the standard in synthetic biology. Nat Biotechnol 26:771-774.
-
(2008)
Nat Biotechnol
, vol.26
, pp. 771-774
-
-
Arkin, A.P.1
-
39
-
-
77649305316
-
BglBricks: A flexible standard for biological part assembly
-
Anderson JC, et al. (2010) BglBricks: A flexible standard for biological part assembly. J Biol Eng 4(1):1-12.
-
(2010)
J Biol Eng
, vol.4
, Issue.1
, pp. 1-12
-
-
Anderson, J.C.1
|