메뉴 건너뛰기




Volumn 8, Issue 7, 2013, Pages

Exploring the Sources of Bacterial Spoilers in Beefsteaks by Culture-Independent High-Throughput Sequencing

Author keywords

[No Author keywords available]

Indexed keywords

RNA 16S;

EID: 84880809968     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0070222     Document Type: Article
Times cited : (173)

References (44)
  • 1
    • 84862850142 scopus 로고    scopus 로고
    • Microbial Hazards in food: food-borne infections and intoxications
    • In: F. Toldrà, editor, Blackwell Publishing
    • Fung DY (2010) Microbial Hazards in food: food-borne infections and intoxications. In: F. Toldrà, editor, Handbook of meat processing. Blackwell Publishing. 481-500.
    • (2010) Handbook of meat processing , pp. 481-500
    • Fung, D.Y.1
  • 5
    • 84862874335 scopus 로고    scopus 로고
    • Spoilage microbiota associated to the storage of raw meat in different conditions
    • Doulgeraki AI, Ercolini D, Villani F, Nychas GJE, (2012) Spoilage microbiota associated to the storage of raw meat in different conditions. Int J Food Microbiol 157: 130-141.
    • (2012) Int J Food Microbiol , vol.157 , pp. 130-141
    • Doulgeraki, A.I.1    Ercolini, D.2    Villani, F.3    Nychas, G.J.E.4
  • 6
    • 0033434358 scopus 로고    scopus 로고
    • Consequences of packaging on bacterial growth. Meat is an ecological niche
    • Labadie J, (1999) Consequences of packaging on bacterial growth. Meat is an ecological niche. Meat Sci 52: 299-305.
    • (1999) Meat Sci , vol.52 , pp. 299-305
    • Labadie, J.1
  • 7
    • 33846323267 scopus 로고    scopus 로고
    • Lactic acid bacteria associated with vacuum packed cooked meat product spoilage: population analysis by rDNA based methods
    • Chenoll E, Macian MC, Elizaquivel P, Aznar R, (2007) Lactic acid bacteria associated with vacuum packed cooked meat product spoilage: population analysis by rDNA based methods. J Appl Microbiol 102: 498-508.
    • (2007) J Appl Microbiol , vol.102 , pp. 498-508
    • Chenoll, E.1    Macian, M.C.2    Elizaquivel, P.3    Aznar, R.4
  • 8
    • 33746101830 scopus 로고    scopus 로고
    • Changes in the spoilage-related microbiota of beef during refrigerated storage under different packaging conditions
    • Ercolini D, Russo F, Torrieri E, Masi P, et al. (2006) Changes in the spoilage-related microbiota of beef during refrigerated storage under different packaging conditions. Appl Environ Microbiol 72: 4663-4671.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 4663-4671
    • Ercolini, D.1    Russo, F.2    Torrieri, E.3    Masi, P.4
  • 9
    • 70449106034 scopus 로고    scopus 로고
    • Effect of a nisin-activated antimicrobial packaging on spoilage-related microbial populations during chilled storage of vacuum-packed beef
    • Ercolini D, Ferrocino I, La Storia A, Mauriello G, Gigli S, et al. (2010) Effect of a nisin-activated antimicrobial packaging on spoilage-related microbial populations during chilled storage of vacuum-packed beef. Food Microbiol 27: 137-143.
    • (2010) Food Microbiol , vol.27 , pp. 137-143
    • Ercolini, D.1    Ferrocino, I.2    La Storia, A.3    Mauriello, G.4    Gigli, S.5
  • 10
    • 82955168976 scopus 로고    scopus 로고
    • Monitoring of microbial metabolites and bacterial diversity in beef stored in different packaging conditions
    • Ercolini D, Ferrocino I, Nasi A, Ndagijimana M, Vernocchi P, et al. (2011) Monitoring of microbial metabolites and bacterial diversity in beef stored in different packaging conditions. Appl Environ Microbiol 77: 7372-7381.
    • (2011) Appl Environ Microbiol , vol.77 , pp. 7372-7381
    • Ercolini, D.1    Ferrocino, I.2    Nasi, A.3    Ndagijimana, M.4    Vernocchi, P.5
  • 11
    • 78149412421 scopus 로고    scopus 로고
    • Spoilage-related microbiota associated with chilled beef stored in air or vacuum pack
    • Pennacchia C, Ercolini D, Villani F, (2011) Spoilage-related microbiota associated with chilled beef stored in air or vacuum pack. Food Microbiol 28: 84-93.
    • (2011) Food Microbiol , vol.28 , pp. 84-93
    • Pennacchia, C.1    Ercolini, D.2    Villani, F.3
  • 12
    • 0031196201 scopus 로고    scopus 로고
    • Risks and prevention of contamination of beef carcasses during the slaughter process in the United States of America
    • Galland JC, (1997) Risks and prevention of contamination of beef carcasses during the slaughter process in the United States of America. Rev Sci Tech OIE 16: 395-404.
    • (1997) Rev Sci Tech OIE , vol.16 , pp. 395-404
    • Galland, J.C.1
  • 13
    • 0032424712 scopus 로고    scopus 로고
    • Sources of contamination during slaughter and measures for control
    • Sheridan JJ, (1998) Sources of contamination during slaughter and measures for control. J Food Safety 18: 321-339.
    • (1998) J Food Safety , vol.18 , pp. 321-339
    • Sheridan, J.J.1
  • 14
    • 0035713095 scopus 로고    scopus 로고
    • Fecal coliform contamination of beef carcasses during the slaughtering process
    • Yalcin S, Nizamlioclu M, Gurbuz U, (2001) Fecal coliform contamination of beef carcasses during the slaughtering process. J Food Safety 21: 225-231.
    • (2001) J Food Safety , vol.21 , pp. 225-231
    • Yalcin, S.1    Nizamlioclu, M.2    Gurbuz, U.3
  • 15
    • 77954629902 scopus 로고    scopus 로고
    • The examination of surface contamination on beef carcasses during slaughter and aging in a small-scale meat packaging operation equipped with an organic acid carcass washer
    • Steele FM, McMullin DQ, (2007) The examination of surface contamination on beef carcasses during slaughter and aging in a small-scale meat packaging operation equipped with an organic acid carcass washer. J Anim Vet Adv 6: 927-931.
    • (2007) J Anim Vet Adv , vol.6 , pp. 927-931
    • Steele, F.M.1    McMullin, D.Q.2
  • 16
    • 85158475270 scopus 로고    scopus 로고
    • Method for reducing contamination of indigenous cattle carcasses during slaughtering
    • Abdalla MA, Suliman SE, Bakhiet AO, (2010) Method for reducing contamination of indigenous cattle carcasses during slaughtering. Assiut Vet Me J 56: 86-93.
    • (2010) Assiut Vet Me J , vol.56 , pp. 86-93
    • Abdalla, M.A.1    Suliman, S.E.2    Bakhiet, A.O.3
  • 17
    • 0343036272 scopus 로고    scopus 로고
    • Use of rRNA gene restriction patterns to evaluate lactic acid bacterium contamination of vacuum-packaged sliced cooked whole-meat product in a meat processing plant
    • Bjorkroth KJ, Korkeala HJ, (1997) Use of rRNA gene restriction patterns to evaluate lactic acid bacterium contamination of vacuum-packaged sliced cooked whole-meat product in a meat processing plant. Appl Environ Microbiol 63: 448-453.
    • (1997) Appl Environ Microbiol , vol.63 , pp. 448-453
    • Bjorkroth, K.J.1    Korkeala, H.J.2
  • 18
    • 3042780217 scopus 로고    scopus 로고
    • Genotypic analysis of Escherichia coli recovered from product and equipment at a beef-packing plant
    • Aslam M, Greer GG, Nattress FM, Gill CO, McMullen LM, (2004) Genotypic analysis of Escherichia coli recovered from product and equipment at a beef-packing plant. J Appl Microbiol 97: 78-86.
    • (2004) J Appl Microbiol , vol.97 , pp. 78-86
    • Aslam, M.1    Greer, G.G.2    Nattress, F.M.3    Gill, C.O.4    McMullen, L.M.5
  • 19
    • 33847192508 scopus 로고    scopus 로고
    • Role of broiler carcasses and processing plant air in contamination of modified-atmosphere-packaged broiler products with psychrotrophic lactic acid bacteria
    • Vihavainen E, Lundstrom HS, Susiluoto T, Koort J, Paulin L, et al. (2007) Role of broiler carcasses and processing plant air in contamination of modified-atmosphere-packaged broiler products with psychrotrophic lactic acid bacteria. App Environ Microb 73: 1136-1145.
    • (2007) App Environ Microb , vol.73 , pp. 1136-1145
    • Vihavainen, E.1    Lundstrom, H.S.2    Susiluoto, T.3    Koort, J.4    Paulin, L.5
  • 20
    • 84877133975 scopus 로고    scopus 로고
    • High-throughput sequencing and metagenomics: moving forward in the culture-independent analysis of food microbial ecology
    • Ercolini D, (2013) High-throughput sequencing and metagenomics: moving forward in the culture-independent analysis of food microbial ecology. Appl Environ Microbiol 79: 3148-3155.
    • (2013) Appl Environ Microbiol , vol.79 , pp. 3148-3155
    • Ercolini, D.1
  • 21
    • 84866597490 scopus 로고    scopus 로고
    • Next-generation approaches to the microbial ecology of food fermentations
    • Bokulich NA, Mills DA, (2012) Next-generation approaches to the microbial ecology of food fermentations. BMB Rep 45: 377-389.
    • (2012) BMB Rep , vol.45 , pp. 377-389
    • Bokulich, N.A.1    Mills, D.A.2
  • 22
    • 84868610117 scopus 로고    scopus 로고
    • "Remake" by high-throughput sequencing of the microbiota involved in the production of water buffalo mozzarella cheese
    • Ercolini D, De Filippis F, La Storia A, Iacono M, (2012) "Remake" by high-throughput sequencing of the microbiota involved in the production of water buffalo mozzarella cheese. Appl Environ Microbiol 78: 8142-8145.
    • (2012) Appl Environ Microbiol , vol.78 , pp. 8142-8145
    • Ercolini, D.1    De Filippis, F.2    La Storia, A.3    Iacono, M.4
  • 24
    • 77956304094 scopus 로고    scopus 로고
    • Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions
    • Reeder J, Knight R, (2010) Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions. Nat Methods 7: 668-669.
    • (2010) Nat Methods , vol.7 , pp. 668-669
    • Reeder, J.1    Knight, R.2
  • 25
    • 77957244650 scopus 로고    scopus 로고
    • Search and clustering orders of magnitude faster than BLAST
    • Edgar RC, (2010) Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26: 2460-2461.
    • (2010) Bioinformatics , vol.26 , pp. 2460-2461
    • Edgar, R.C.1
  • 26
    • 34548293679 scopus 로고    scopus 로고
    • Naïve Bayesan classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
    • Wang Q, Garrity GM, Tiedje JM, Cole JR, (2007) Naïve Bayesan classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 73: 5261-5267.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 5261-5267
    • Wang, Q.1    Garrity, G.M.2    Tiedje, J.M.3    Cole, J.R.4
  • 27
    • 84857122937 scopus 로고    scopus 로고
    • An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archea
    • McDonald D, Price MN, Goodrich J, Nawrocki EP, De Santis TZ, et al. (2012) An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archea. ISME J 6: 610-618.
    • (2012) ISME J , vol.6 , pp. 610-618
    • McDonald, D.1    Price, M.N.2    Goodrich, J.3    Nawrocki, E.P.4    De Santis, T.Z.5
  • 28
    • 0036712327 scopus 로고    scopus 로고
    • Estimating the number of species in a stochastic abundance model
    • Chao A, Bunge J, (2002) Estimating the number of species in a stochastic abundance model. Biometrics 58: 531-539.
    • (2002) Biometrics , vol.58 , pp. 531-539
    • Chao, A.1    Bunge, J.2
  • 30
    • 29144464937 scopus 로고    scopus 로고
    • UniFrac: a new phylogenetic method for comparing microbial communities
    • Lozupone C, Knight R, (2005) UniFrac: a new phylogenetic method for comparing microbial communities. Appl Environ Microbiol 71: 8228-8235.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 8228-8235
    • Lozupone, C.1    Knight, R.2
  • 31
    • 0037311919 scopus 로고    scopus 로고
    • TM4: a free, open-source system for microarray data management and analysis
    • Saeed AI, Sharov V, White J, Li J, Liang W, et al. (2003) TM4: a free, open-source system for microarray data management and analysis. Biotechniques 34: 374-378.
    • (2003) Biotechniques , vol.34 , pp. 374-378
    • Saeed, A.I.1    Sharov, V.2    White, J.3    Li, J.4    Liang, W.5
  • 32
    • 0242490780 scopus 로고    scopus 로고
    • Cytoscape: a software environment for integrated models of biomolecular interaction networks
    • Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, et al. (2003) Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res 13: 2498-2504.
    • (2003) Genome Res , vol.13 , pp. 2498-2504
    • Shannon, P.1    Markiel, A.2    Ozier, O.3    Baliga, N.S.4    Wang, J.T.5
  • 33
    • 79954594537 scopus 로고    scopus 로고
    • Modeling microbial competition in food: Application to the behavior of Listeria monocytogenes and lactic acid flora in pork meat products
    • Cornu M, Billoir E, Bergis H, Beaufort A, Zuliani V, (2011) Modeling microbial competition in food: Application to the behavior of Listeria monocytogenes and lactic acid flora in pork meat products. Food Microbiol 28: 639-647.
    • (2011) Food Microbiol , vol.28 , pp. 639-647
    • Cornu, M.1    Billoir, E.2    Bergis, H.3    Beaufort, A.4    Zuliani, V.5
  • 34
    • 84902618664 scopus 로고    scopus 로고
    • Pseudomonas and related genera
    • In: C. W. Blackburn, editor, Cambridge: Woodhead Publishing Limited
    • Liao CH (2006) Pseudomonas and related genera. In: C. W. Blackburn, editor, Food spoilage microorganisms. Cambridge: Woodhead Publishing Limited. 213-286.
    • (2006) Food spoilage microorganisms , pp. 213-286
    • Liao, C.H.1
  • 35
    • 34247550694 scopus 로고    scopus 로고
    • Simultaneous detection of Pseudomonas fragi, P. lundensis and P. putida from meat by a multiplex PCR assay targeting the carA gene
    • Ercolini D, Russo F, Blaiotta G, Pepe O, Mauriello G, et al. (2007) Simultaneous detection of Pseudomonas fragi, P. lundensis and P. putida from meat by a multiplex PCR assay targeting the carA gene. Appl Environ Microbiol 73: 2354-2359.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 2354-2359
    • Ercolini, D.1    Russo, F.2    Blaiotta, G.3    Pepe, O.4    Mauriello, G.5
  • 36
    • 77955663846 scopus 로고    scopus 로고
    • Different molecular types of Pseudomonas fragi have the same overall behaviour as meat spoilers
    • Ercolini D, Casaburi A, Nasi A, Ferrocino I, Di Monaco R, et al. (2010) Different molecular types of Pseudomonas fragi have the same overall behaviour as meat spoilers. Int J Food Microbiol 142: 120-131.
    • (2010) Int J Food Microbiol , vol.142 , pp. 120-131
    • Ercolini, D.1    Casaburi, A.2    Nasi, A.3    Ferrocino, I.4    Di Monaco, R.5
  • 37
    • 33745748880 scopus 로고    scopus 로고
    • Behaviour of Brochothrix thermosphacta in presence of other meat spoilage microbial groups
    • Russo F, Ercolini D, Mauriello G, Villani F, (2006) Behaviour of Brochothrix thermosphacta in presence of other meat spoilage microbial groups. Food Microbiol 23: 797-802.
    • (2006) Food Microbiol , vol.23 , pp. 797-802
    • Russo, F.1    Ercolini, D.2    Mauriello, G.3    Villani, F.4
  • 38
    • 0037170804 scopus 로고    scopus 로고
    • Change in the composition of the microflora on vacuum-packaged beef during chiller storage
    • Sakala RM, Hayashidani H, Kato Y, Hirata T, Makino Y, et al. (2002) Change in the composition of the microflora on vacuum-packaged beef during chiller storage. Int J Food Microbiol 74: 87-99.
    • (2002) Int J Food Microbiol , vol.74 , pp. 87-99
    • Sakala, R.M.1    Hayashidani, H.2    Kato, Y.3    Hirata, T.4    Makino, Y.5
  • 39
    • 0034212958 scopus 로고    scopus 로고
    • Bacterial populations associated with bulk packaged beef supplemented with dietary vitamin E
    • Buys EM, Nortje GL, Jooste PJ, Von Holy A, (2000) Bacterial populations associated with bulk packaged beef supplemented with dietary vitamin E. Int J Food Microbiol. 56: 239-244.
    • (2000) Int J Food Microbiol , vol.56 , pp. 239-244
    • Buys, E.M.1    Nortje, G.L.2    Jooste, P.J.3    Von Holy, A.4
  • 40
    • 0038078459 scopus 로고    scopus 로고
    • The bacterial flora of fresh and chill-stored pork: analysis by cloning and sequencing of the 16S rRNA genes
    • Olsson C, Ahrne S, Pettersson B, Molin G, (2003) The bacterial flora of fresh and chill-stored pork: analysis by cloning and sequencing of the 16S rRNA genes. Int J Food Microbiol 83: 245-252.
    • (2003) Int J Food Microbiol , vol.83 , pp. 245-252
    • Olsson, C.1    Ahrne, S.2    Pettersson, B.3    Molin, G.4
  • 41
    • 77954261767 scopus 로고    scopus 로고
    • Enhanced surface colonization by Escherichia coli O157:H7 in biofilms formed by an Acinetobacter calcoaceticus isolate from meat-processing environments
    • Habimana O, Heir E, Langsrud S, Asli AW, Møretrø T, (2010) Enhanced surface colonization by Escherichia coli O157:H7 in biofilms formed by an Acinetobacter calcoaceticus isolate from meat-processing environments. Appl Environ Microbiol 76: 4557-4559.
    • (2010) Appl Environ Microbiol , vol.76 , pp. 4557-4559
    • Habimana, O.1    Heir, E.2    Langsrud, S.3    Asli, A.W.4    Møretrø, T.5
  • 42
    • 0030969866 scopus 로고    scopus 로고
    • Distribution and sources of microbial contamination on beef carcasses
    • Bell RG, (1997) Distribution and sources of microbial contamination on beef carcasses. J Appl Microbiol 82: 292-300.
    • (1997) J Appl Microbiol , vol.82 , pp. 292-300
    • Bell, R.G.1
  • 43
    • 0031171194 scopus 로고    scopus 로고
    • A survey of microbial levels for incoming raw beef, environmental sources, and ground beef in a red meat processing plant
    • Eisel WG, Linton RH, Muriana PM, (1997) A survey of microbial levels for incoming raw beef, environmental sources, and ground beef in a red meat processing plant. Food Microbiol 14: 273-282.
    • (1997) Food Microbiol , vol.14 , pp. 273-282
    • Eisel, W.G.1    Linton, R.H.2    Muriana, P.M.3
  • 44
    • 84866650828 scopus 로고    scopus 로고
    • A meat control system achieving significant reduction of visible faecal and ingesta contamination of cattle, lamb and swine carcasses at Swedish slaughterhouses
    • Lindbald M, Berking C, (2013) A meat control system achieving significant reduction of visible faecal and ingesta contamination of cattle, lamb and swine carcasses at Swedish slaughterhouses. Food Control 30: 101-105.
    • (2013) Food Control , vol.30 , pp. 101-105
    • Lindbald, M.1    Berking, C.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.