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Volumn 8, Issue 1, 2007, Pages 118-127

Adjusting batch effects in microarray expression data using empirical Bayes methods

Author keywords

Batch effects; Empirical Bayes; Microarrays; Monte Carlo

Indexed keywords

ARTICLE; BAYES THEOREM; DNA MICROARRAY; GENE EXPRESSION PROFILING; HUMAN; METHODOLOGY; STATISTICAL ANALYSIS;

EID: 33845432928     PISSN: 14654644     EISSN: 14684357     Source Type: Journal    
DOI: 10.1093/biostatistics/kxj037     Document Type: Article
Times cited : (5374)

References (20)
  • 3
    • 0031246430 scopus 로고    scopus 로고
    • Ratio-based decisions and the quantitive analysis of cDNA microarray images
    • CHEN, Y., DOUGHERTY, E. R. AND BITTNER, M. L. (1997). Ratio-based decisions and the quantitive analysis of cDNA microarray images. Journal of Biomedical Optics 2, 364-74.
    • (1997) Journal of Biomedical Optics , vol.2 , pp. 364-374
    • Chen, Y.1    Dougherty, E.R.2    Bittner, M.L.3
  • 6
    • 33645086851 scopus 로고    scopus 로고
    • Bayesian robust inference for differential gene expression in microarrays with multiple samples
    • GOTTARDO, R., RAFTERY, A. E., YEE YEUNG, K. AND BUMGARNER, R. E. (2006). Bayesian robust inference for differential gene expression in microarrays with multiple samples. Biometrics 62, 10-8.
    • (2006) Biometrics , vol.62 , pp. 10-18
    • Gottardo, R.1    Raftery, A.E.2    Yee Yeung, K.3    Bumgarner, R.E.4
  • 8
    • 0346888587 scopus 로고    scopus 로고
    • On parametric empirical Bayes methods for comparing multiple groups using replicated gene expression profiles
    • KENDZIORSKI, C. M., NEWTON, M. A., LAN, H. AND GOULD, M. N. (2003). On parametric empirical Bayes methods for comparing multiple groups using replicated gene expression profiles. Statistics in Medicine 22, 3899-914.
    • (2003) Statistics in Medicine , vol.22 , pp. 3899-3914
    • Kendziorski, C.M.1    Newton, M.A.2    Lan, H.3    Gould, M.N.4
  • 9
    • 84984932880 scopus 로고    scopus 로고
    • Array of hope
    • LANDER, E. S. (1999). Array of hope. Nature Genetics 21, 3-4.
    • (1999) Nature Genetics , vol.21 , pp. 3-4
    • Lander, E.S.1
  • 10
    • 2342634096 scopus 로고    scopus 로고
    • DNA-chip analyzer (dChip)
    • Parmigiani, G., Garrett, E. S., Irizarry, R. and Zeger, S. L. (editors). New York: Springer
    • LI, C. AND WONG, W. H. (2003). DNA-Chip Analyzer (dChip). In: Parmigiani, G., Garrett, E. S., Irizarry, R. and Zeger, S. L. (editors), The Analysis of Gene Expression Data: Methods and Software. New York: Springer, pp 120-41.
    • (2003) The Analysis of Gene Expression Data: Methods and Software , pp. 120-141
    • Li, C.1    Wong, W.H.2
  • 12
    • 0034923013 scopus 로고    scopus 로고
    • On differential variability of expression ratios: Improving statistical inference about gene expression changes from microarray data
    • NEWTON, M. A., KENDZIORSKI, C. M., RICHMOND, C. S., BLATTNER, F. R. AND TSUI, K. W. (2001). On differential variability of expression ratios: improving statistical inference about gene expression changes from microarray data. Journal of computational Biology 8, 37-52.
    • (2001) Journal of Computational Biology , vol.8 , pp. 37-52
    • Newton, M.A.1    Kendziorski, C.M.2    Richmond, C.S.3    Blattner, F.R.4    Tsui, K.W.5
  • 14
    • 21844461828 scopus 로고    scopus 로고
    • Incorporating biological information as a prior in an empirical Bayes approach to analyzing microarray data
    • PAN, W. (2005). Incorporating biological information as a prior in an empirical Bayes approach to analyzing microarray data. Statistical Applications in Genetics and Molecular Biology 4.
    • (2005) Statistical Applications in Genetics and Molecular Biology , vol.4
    • Pan, W.1
  • 16
    • 0035752668 scopus 로고    scopus 로고
    • Feature extraction and normalization algorithms for high-density oligonucleotide gene expression array data
    • SCHADT, E. E., Li, C., ELLIS, B. AND WONG, W. H. (2001). Feature extraction and normalization algorithms for high-density oligonucleotide gene expression array data. Journal of Cellular Biochemistry Supplement 37, 120-5.
    • (2001) Journal of Cellular Biochemistry Supplement , vol.37 , pp. 120-125
    • Schadt, E.E.1    Li, C.2    Ellis, B.3    Wong, W.H.4
  • 17
    • 4544341015 scopus 로고    scopus 로고
    • Linear models and empirical Bayes methods for assessing differential expression in microarray experiments
    • SMYTH, G. K. (2004). Linear models and empirical Bayes methods for assessing differential expression in microarray experiments. Statistical Applications in Genetics and Molecular Biology 3.
    • (2004) Statistical Applications in Genetics and Molecular Biology , vol.3
    • Smyth, G.K.1
  • 18
    • 0035875553 scopus 로고    scopus 로고
    • Issues in cDNA microarray analysis: Quality filtering, channel normalization, models of variations and assessment of gene effects
    • TSENG, G. C., OH, M. K., ROHLIN, L., LIAO, J. C. AND WONG, W. H. (2001). Issues in cDNA microarray analysis: quality filtering, channel normalization, models of variations and assessment of gene effects. Nucleic Acids Research 29, 2549-57.
    • (2001) Nucleic Acids Research , vol.29 , pp. 2549-2557
    • Tseng, G.C.1    Oh, M.K.2    Rohlin, L.3    Liao, J.C.4    Wong, W.H.5
  • 20
    • 1342294092 scopus 로고    scopus 로고
    • Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation
    • YANG, Y. H., DUDOIT, S., LUU, P., LIN, D. M., PENG, V., NGAI, J. AND SPEED, T. P. (2002). Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation. Nucleic Acids Research 30, e15.
    • (2002) Nucleic Acids Research , vol.30
    • Yang, Y.H.1    Dudoit, S.2    Luu, P.3    Lin, D.M.4    Peng, V.5    Ngai, J.6    Speed, T.P.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.