-
1
-
-
33748322018
-
Analysis of the Salmonella typhimurium proteome through environmental response toward infectious conditions
-
Adkins,J.N. et al. (2006) Analysis of the Salmonella typhimurium proteome through environmental response toward infectious conditions. Mol. Cell Proteomics, 5, 1450-1461.
-
(2006)
Mol. Cell Proteomics
, vol.5
, pp. 1450-1461
-
-
Adkins, J.N.1
-
2
-
-
37549023558
-
Advancement in protein inference from shotgun proteomics using peptide detectability
-
Alves,P. et al. (2007) Advancement in protein inference from shotgun proteomics using peptide detectability. Pac. Symp. Biocomput., 409-420.
-
(2007)
Pac. Symp. Biocomput.
, pp. 409-420
-
-
Alves, P.1
-
3
-
-
0042972838
-
A new algorithm for the evaluation of shotgun peptide sequencing in proteomics: support vector machine classification of peptide MS/MS spectra and SEQUEST scores
-
Anderson,D.C. et al. (2003) A new algorithm for the evaluation of shotgun peptide sequencing in proteomics: support vector machine classification of peptide MS/MS spectra and SEQUEST scores. J. Proteome Res., 2, 137-146.
-
(2003)
J. Proteome Res.
, vol.2
, pp. 137-146
-
-
Anderson, D.C.1
-
4
-
-
33646177915
-
Estimating probabilities of peptide database identifications to LC-FTICR-MS observations
-
Anderson,K.K. et al. (2006) Estimating probabilities of peptide database identifications to LC-FTICR-MS observations. Proteome Sci., 4, 1.
-
(2006)
Proteome Sci.
, vol.4
, pp. 1
-
-
Anderson, K.K.1
-
6
-
-
21244443812
-
The use of proteotypic peptide libraries for protein identification
-
Craig,R. et al. (2005) The use of proteotypic peptide libraries for protein identification. Rapid Commun. Mass Spectrom., 19, 1844-1850.
-
(2005)
Rapid Commun. Mass Spectrom.
, vol.19
, pp. 1844-1850
-
-
Craig, R.1
-
8
-
-
36448962323
-
MudPIT: multidimensional protein identification technology
-
Delahunty,C.M. and Yates,J.R. 3rd (2007) MudPIT: multidimensional protein identification technology, BioTechniques, 43, 563, 565-567.
-
(2007)
BioTechniques
, vol.43
, Issue.563
, pp. 565-567
-
-
Delahunty, C.M.1
Yates J.R. 3rd2
-
9
-
-
33644876912
-
The PeptideAtlas project
-
Desiere,F. et al. (2006) The PeptideAtlas project. Nucleic Acids Res., 34, D655-D658.
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Desiere, F.1
-
10
-
-
0021691817
-
Analysis of membrane and surface protein sequences with the hydrophobic moment plot
-
Eisenberg,D. et al. (1984) Analysis of membrane and surface protein sequences with the hydrophobic moment plot. J. Mol. Biol., 179, 125-142.
-
(1984)
J. Mol. Biol.
, vol.179
, pp. 125-142
-
-
Eisenberg, D.1
-
11
-
-
0016197604
-
Amino acid difference formula to help explain protein evolution
-
Grantham,R. (1974) Amino acid difference formula to help explain protein evolution. Science, 185, 862-864.
-
(1974)
Science
, vol.185
, pp. 862-864
-
-
Grantham, R.1
-
12
-
-
0036161259
-
Gene selection for cancer classification using support vector machines
-
Guyon,I. et al. (2002) Gene selection for cancer classification using support vector machines. Mach. Learn., 46, 389-422.
-
(2002)
Mach. Learn.
, vol.46
, pp. 389-422
-
-
Guyon, I.1
-
13
-
-
33750967325
-
Biomarker candidate identification in Yersinia pestis using organism-wide semiquantitative proteomics
-
Hixson,K.K. et al. (2006) Biomarker candidate identification in Yersinia pestis using organism-wide semiquantitative proteomics. J. Proteome Res., 5, 3008-3017.
-
(2006)
J. Proteome Res.
, vol.5
, pp. 3008-3017
-
-
Hixson, K.K.1
-
14
-
-
0000448982
-
Prediction of protein antigenic determinants from amino acid sequences
-
Hopp,T.P. and Woods,K.R. (1981) Prediction of protein antigenic determinants from amino acid sequences. Proc. Natl Acad. Sci. USA, 78, 3824-3828.
-
(1981)
Proc. Natl Acad. Sci. USA
, vol.78
, pp. 3824-3828
-
-
Hopp, T.P.1
Woods, K.R.2
-
15
-
-
20444459841
-
Statistical characterization of the charge state and residue dependence of low-energy CID peptide dissociation patterns
-
Huang,Y. et al. (2005) Statistical characterization of the charge state and residue dependence of low-energy CID peptide dissociation patterns, Anal. Chem., 77, 5800-5813.
-
(2005)
Anal. Chem.
, vol.77
, pp. 5800-5813
-
-
Huang, Y.1
-
16
-
-
33644875983
-
PRIDE: a public repository of protein and peptide identifications for the proteomics community
-
Jones,P. et al. (2006) PRIDE: a public repository of protein and peptide identifications for the proteomics community. Nucleic Acids Res., 34, D659-D663.
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Jones, P.1
-
17
-
-
33645461851
-
PRISM: a data management system for high-throughput proteomics
-
Kiebel,G.R. et al. (2006) PRISM: a data management system for high-throughput proteomics. Proteomics, 6, 1783-1790.
-
(2006)
Proteomics
, vol.6
, pp. 1783-1790
-
-
Kiebel, G.R.1
-
18
-
-
21744435622
-
Scoring proteomes with proteotypic peptide probes
-
Kuster,B. et al. (2005) Scoring proteomes with proteotypic peptide probes. Nat. Rev. Mol. Cell Biol., 6, 577-583.
-
(2005)
Nat. Rev. Mol. Cell Biol.
, vol.6
, pp. 577-583
-
-
Kuster, B.1
-
19
-
-
0020475449
-
A simple method for displaying the hydropathic character of a protein
-
Kyte,J. and Doolittle,R.F. (1982) A simple method for displaying the hydropathic character of a protein. J. Mol. Biol., 157, 105-132.
-
(1982)
J. Mol. Biol.
, vol.157
, pp. 105-132
-
-
Kyte, J.1
Doolittle, R.F.2
-
20
-
-
33947366516
-
Development and validation of a spectral library searching method for peptide identification from MS/MS
-
Lam,H. et al. (2007) Development and validation of a spectral library searching method for peptide identification from MS/MS. Proteomics, 7, 655-667.
-
(2007)
Proteomics
, vol.7
, pp. 655-667
-
-
Lam, H.1
-
21
-
-
84872126889
-
AMT tag approach to proteomic characterization of Deinococcus radiodurans and Shewanella oneidensis
-
Lipton,M.S. et al. (2006) AMT tag approach to proteomic characterization of Deinococcus radiodurans and Shewanella oneidensis. Methods Biochem. Anal., 49, 113-134.
-
(2006)
Methods Biochem. Anal.
, vol.49
, pp. 113-134
-
-
Lipton, M.S.1
-
22
-
-
33846165487
-
Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation
-
Lu,P. et al. (2007) Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation. Nat. Biotechnol., 25, 117-124.
-
(2007)
Nat. Biotechnol.
, vol.25
, pp. 117-124
-
-
Lu, P.1
-
23
-
-
33846133955
-
Computational prediction of proteotypic peptides for quantitative proteomics
-
Mallick,P. et al. (2007) Computational prediction of proteotypic peptides for quantitative proteomics. Nat. Biotechnol., 25, 125-131.
-
(2007)
Nat. Biotechnol.
, vol.25
, pp. 125-131
-
-
Mallick, P.1
-
24
-
-
34547156610
-
A platform for accurate mass and time analyses of mass spectrometry data
-
May,D. et al. (2007) A platform for accurate mass and time analyses of mass spectrometry data. J. Proteome Res., 6, 2685-2694.
-
(2007)
J. Proteome Res.
, vol.6
, pp. 2685-2694
-
-
May, D.1
-
25
-
-
0042338362
-
A statistical model for identifying proteins by tandem mass spectrometry
-
Nesvizhskii,A.I. et al. (2003) A statistical model for identifying proteins by tandem mass spectrometry. Anal. Chem., 75, 4646-4658.
-
(2003)
Anal. Chem.
, vol.75
, pp. 4646-4658
-
-
Nesvizhskii, A.I.1
-
26
-
-
0036100116
-
Learning gene functional classifications from multiple data types
-
Pavlidis,P. et al. (2002) Learning gene functional classifications from multiple data types. J. Comput. Biol., 9, 401-411.
-
(2002)
J. Comput. Biol.
, vol.9
, pp. 401-411
-
-
Pavlidis, P.1
-
27
-
-
33746448330
-
Improved peptide elution time prediction for reversed-phase liquid chromatography-MS by incorporating peptide sequence information
-
Petritis,K. et al. (2006) Improved peptide elution time prediction for reversed-phase liquid chromatography-MS by incorporating peptide sequence information. Anal. Chem., 78, 5026-5039.
-
(2006)
Anal. Chem.
, vol.78
, pp. 5026-5039
-
-
Petritis, K.1
-
28
-
-
0024278757
-
Hydrophobicity of the peptide C=OH-N hydrogen-bonded group
-
Roseman,M.A. (1988) Hydrophobicity of the peptide C=OH-N hydrogen-bonded group. J. Mol. Biol., 201, 621-623.
-
(1988)
J. Mol. Biol.
, vol.201
, pp. 621-623
-
-
Roseman, M.A.1
-
29
-
-
0036406861
-
The use of accurate mass tags for high-throughput microbial proteomics
-
Smith,R.D. et al. (2002a) The use of accurate mass tags for high-throughput microbial proteomics. Omics, 6, 61-90.
-
(2002)
Omics
, vol.6
, pp. 61-90
-
-
Smith, R.D.1
-
30
-
-
0036253914
-
An accurate mass tag strategy for quantitative and high-throughput proteome measurements
-
Smith,R.D. et al. (2002b) An accurate mass tag strategy for quantitative and high-throughput proteome measurements. Proteomics, 2, 513-523.
-
(2002)
Proteomics
, vol.2
, pp. 513-523
-
-
Smith, R.D.1
-
31
-
-
33747885134
-
Acomputational approach toward label-free protein quantification using predicted peptide detectability
-
Tang,H. et al. (2006)Acomputational approach toward label-free protein quantification using predicted peptide detectability. Bioinformatics, 22, e481-e488.
-
(2006)
Bioinformatics
, vol.22
-
-
Tang, H.1
-
33
-
-
0035106351
-
Large-scale analysis of the yeast proteome by multidimensional protein identification technology
-
Washburn,M.P. et al. (2001) Large-scale analysis of the yeast proteome by multidimensional protein identification technology. Nat. Biotechnol., 19, 242-247.
-
(2001)
Nat. Biotechnol.
, vol.19
, pp. 242-247
-
-
Washburn, M.P.1
-
34
-
-
36349024645
-
Current trends in computational inference from mass spectrometry-based proteomics
-
Webb-Robertson,B.J. and Cannon,W.R. (2007) Current trends in computational inference from mass spectrometry-based proteomics, Brief. Bioinform., 8, 304-317.
-
(2007)
Brief. Bioinform.
, vol.8
, pp. 304-317
-
-
Webb-Robertson, B.J.1
Cannon, W.R.2
-
35
-
-
0029644596
-
Method to correlate tandem mass spectra of modified peptides to amino acid sequences in the protein database
-
Yates,J.R. 3rd et al. (1995) Method to correlate tandem mass spectra of modified peptides to amino acid sequences in the protein database. Anal.1; Chem., 67, 1426-1436.
-
(1995)
Anal. Chem.
, vol.67
, pp. 1426-1436
-
-
Yates J.R. 3rd1
-
36
-
-
0032159387
-
Method to compare collision-induced dissociation spectra of peptides: potential for library searching and subtractive analysis
-
Yates,J.R. 3rd et al. (1998) Method to compare collision-induced dissociation spectra of peptides: potential for library searching and subtractive analysis. Anal. Chem., 70, 3557-3565.
-
(1998)
Anal. Chem.
, vol.70
, pp. 3557-3565
-
-
Yates J.R. 3rd1
-
37
-
-
0014349825
-
The characterization of amino acid sequences in proteins by statistical methods
-
Zimmerman,J.M. et al. (1968) The characterization of amino acid sequences in proteins by statistical methods. J. Theor. Biol., 21, 170-201.
-
(1968)
J. Theor. Biol.
, vol.21
, pp. 170-201
-
-
Zimmerman, J.M.1
|