메뉴 건너뛰기




Volumn 55, Issue , 2013, Pages 6-21

Genome-wide survey of repetitive DNA elements in the button mushroom Agaricus bisporus

Author keywords

Methylation; Microsatellites; Minisatellites; Repeatome; Telomeres; Transposable elements

Indexed keywords

MOLECULAR MARKER;

EID: 84879025870     PISSN: 10871845     EISSN: 10960937     Source Type: Journal    
DOI: 10.1016/j.fgb.2013.04.003     Document Type: Article
Times cited : (34)

References (102)
  • 1
    • 84864920042 scopus 로고    scopus 로고
    • Transposable elements are a significant contributor to tandem repeats in the human genome
    • Ahmed M., Liang P. Transposable elements are a significant contributor to tandem repeats in the human genome. Comp. Funct. Genomics 2012, 2012:947089.
    • (2012) Comp. Funct. Genomics , vol.2012 , pp. 947089
    • Ahmed, M.1    Liang, P.2
  • 2
    • 0025183708 scopus 로고
    • Basic local alignment search tool
    • Altschul S.F., et al. Basic local alignment search tool. J. Mol. Biol. 1990, 215:403-410.
    • (1990) J. Mol. Biol. , vol.215 , pp. 403-410
    • Altschul, S.F.1
  • 3
    • 0034069495 scopus 로고    scopus 로고
    • Gene Ontology: tool for the unification of biology
    • Ashburner M., et al. Gene Ontology: tool for the unification of biology. Nat. Genet. 2000, 25:25-29.
    • (2000) Nat. Genet. , vol.25 , pp. 25-29
    • Ashburner, M.1
  • 4
    • 0034474333 scopus 로고    scopus 로고
    • Molecular cloning of a widely distributed microsatellite core sequence from the cultivated mushroom Agaricus bisporus
    • Barroso G., et al. Molecular cloning of a widely distributed microsatellite core sequence from the cultivated mushroom Agaricus bisporus. Fungal Genet. Biol. 2000, 31:115-123.
    • (2000) Fungal Genet. Biol. , vol.31 , pp. 115-123
    • Barroso, G.1
  • 5
    • 0033555906 scopus 로고    scopus 로고
    • Tandem repeats finder: a program to analyze DNA sequences
    • Benson G. Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 1999, 27:573-580.
    • (1999) Nucleic Acids Res. , vol.27 , pp. 573-580
    • Benson, G.1
  • 6
    • 77955349439 scopus 로고    scopus 로고
    • Dating the molecular clock in fungi-how close are we ?
    • Berbee M.L., Taylor J.W. Dating the molecular clock in fungi-how close are we ?. Fung. Biol. Rev. 2010, 24:1-16.
    • (2010) Fung. Biol. Rev. , vol.24 , pp. 1-16
    • Berbee, M.L.1    Taylor, J.W.2
  • 7
    • 0030785629 scopus 로고    scopus 로고
    • Aspergillus nidulans maintains short telomeres throughout development
    • Bhattacharyya A., Blackburn E.H. Aspergillus nidulans maintains short telomeres throughout development. Nucleic Acids Res. 1997, 25:1426-1431.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 1426-1431
    • Bhattacharyya, A.1    Blackburn, E.H.2
  • 8
    • 0035929353 scopus 로고    scopus 로고
    • Switching and signaling at the telomere
    • Blackburn E.H. Switching and signaling at the telomere. Cell 2001, 106:661-673.
    • (2001) Cell , vol.106 , pp. 661-673
    • Blackburn, E.H.1
  • 9
    • 0027137039 scopus 로고
    • Morphological, genetic, and interfertility analyses reveal a novel, tetrasporic variety of Agaricus bisporus from the Sonoran desert of California
    • Callac P., et al. Morphological, genetic, and interfertility analyses reveal a novel, tetrasporic variety of Agaricus bisporus from the Sonoran desert of California. Mycologia 1993, 85:835-851.
    • (1993) Mycologia , vol.85 , pp. 835-851
    • Callac, P.1
  • 10
    • 0037994115 scopus 로고    scopus 로고
    • A novel homothallic variety of Agaricus bisporus comprises rare tetrasporic isolates from Europe
    • Callac P., et al. A novel homothallic variety of Agaricus bisporus comprises rare tetrasporic isolates from Europe. Mycologia 2003, 95:222-231.
    • (2003) Mycologia , vol.95 , pp. 222-231
    • Callac, P.1
  • 11
    • 58349111875 scopus 로고    scopus 로고
    • AmiGO: online access to ontology and annotation data
    • Carbon S., et al. AmiGO: online access to ontology and annotation data. Bioinformatics 2009, 25:288-289.
    • (2009) Bioinformatics , vol.25 , pp. 288-289
    • Carbon, S.1
  • 12
    • 79955778824 scopus 로고    scopus 로고
    • Quantitative trait locus (QTL) mapping reveals a role for unstudied genes in Aspergillus virulence
    • Christians J.K., et al. Quantitative trait locus (QTL) mapping reveals a role for unstudied genes in Aspergillus virulence. PLoS ONE 2011, 6:e19325.
    • (2011) PLoS ONE , vol.6
    • Christians, J.K.1
  • 13
    • 85082788390 scopus 로고    scopus 로고
    • Telomeres in fungi
    • Springer-Verlag, Berlin, Heidelberg, P.J. Sunnerhagen (Ed.)
    • Cohn M., et al. Telomeres in fungi. Comparative genomics using Fungi as a model 2005, 101-130. Springer-Verlag, Berlin, Heidelberg. P.J. Sunnerhagen (Ed.).
    • (2005) Comparative genomics using Fungi as a model , pp. 101-130
    • Cohn, M.1
  • 14
    • 34548669353 scopus 로고    scopus 로고
    • Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization
    • Cuomo C.A., et al. Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization. Science 2007, 317:1400-1402.
    • (2007) Science , vol.317 , pp. 1400-1402
    • Cuomo, C.A.1
  • 15
    • 0141468761 scopus 로고    scopus 로고
    • Transposable elements in filamentous fungi
    • Daboussi M.J., Capy P. Transposable elements in filamentous fungi. Annu. Rev. Microbiol. 2003, 57:275-299.
    • (2003) Annu. Rev. Microbiol. , vol.57 , pp. 275-299
    • Daboussi, M.J.1    Capy, P.2
  • 16
    • 0037929505 scopus 로고    scopus 로고
    • Identification of Ty1-copia retrotransposons in three ectomycorrhizal basidiomycetes: evolutionary relationships and use as molecular markers
    • Diez J., et al. Identification of Ty1-copia retrotransposons in three ectomycorrhizal basidiomycetes: evolutionary relationships and use as molecular markers. Curr. Genet. 2003, 43:34-44.
    • (2003) Curr. Genet. , vol.43 , pp. 34-44
    • Diez, J.1
  • 17
    • 79959340303 scopus 로고    scopus 로고
    • Obligate biotrophy features unraveled by the genomic analysis of rust fungi
    • Duplessis S., et al. Obligate biotrophy features unraveled by the genomic analysis of rust fungi. Proc. Natl. Acad. Sci. USA 2011, 108:9166-9171.
    • (2011) Proc. Natl. Acad. Sci. USA , vol.108 , pp. 9166-9171
    • Duplessis, S.1
  • 18
    • 34548316266 scopus 로고    scopus 로고
    • Challenges of microsatellite isolation in fungi
    • Dutech C., et al. Challenges of microsatellite isolation in fungi. Fungal Genet. Biol. 2007, 44:933-949.
    • (2007) Fungal Genet. Biol. , vol.44 , pp. 933-949
    • Dutech, C.1
  • 19
    • 3042782819 scopus 로고    scopus 로고
    • Microsatellites: simple sequences with complex evolution
    • Ellegreen H. Microsatellites: simple sequences with complex evolution. Nat. Rev. Genet. 2004, 4:435-445.
    • (2004) Nat. Rev. Genet. , vol.4 , pp. 435-445
    • Ellegreen, H.1
  • 20
    • 34447499169 scopus 로고    scopus 로고
    • Telomeres in the rice blast fungus Magnaporthe oryzae: the world of the end as we know it
    • Farman M. Telomeres in the rice blast fungus Magnaporthe oryzae: the world of the end as we know it. FEMS Lett. 2007, 273:125-132.
    • (2007) FEMS Lett. , vol.273 , pp. 125-132
    • Farman, M.1
  • 21
    • 43249118838 scopus 로고    scopus 로고
    • Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus
    • Fedorova N.D., et al. Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus. PLoS Genet. 2008, 4:e1000046.
    • (2008) PLoS Genet. , vol.4
    • Fedorova, N.D.1
  • 22
    • 84862977387 scopus 로고    scopus 로고
    • The Paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes
    • Floudas D., et al. The Paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes. Science 2012, 336:1715-1719.
    • (2012) Science , vol.336 , pp. 1715-1719
    • Floudas, D.1
  • 23
    • 84861140770 scopus 로고    scopus 로고
    • QTL mapping of yield-related components and oligogenic control of the cap colour in the button mushroom Agaricus bisporus
    • Foulongne-Oriol M., et al. QTL mapping of yield-related components and oligogenic control of the cap colour in the button mushroom Agaricus bisporus. Appl. Environ. Microbiol. 2012, 78:2422-2434.
    • (2012) Appl. Environ. Microbiol. , vol.78 , pp. 2422-2434
    • Foulongne-Oriol, M.1
  • 24
    • 84861147676 scopus 로고    scopus 로고
    • Relationship between yield components and partial resistance to Lecanicillium fungicola in Agaricus bisporus assessed by QTL mapping
    • Foulongne-Oriol M., et al. Relationship between yield components and partial resistance to Lecanicillium fungicola in Agaricus bisporus assessed by QTL mapping. Appl. Environ. Microbiol. 2012, 78:2435-2442.
    • (2012) Appl. Environ. Microbiol. , vol.78 , pp. 2435-2442
    • Foulongne-Oriol, M.1
  • 25
    • 75949100549 scopus 로고    scopus 로고
    • An expanded genetic linkage map of an intervarietal Agaricus bisporus var. bisporus×A. bisporus var. burnettii hybrid based on AFLP, SSR and CAPS markers sheds light on the recombination behaviour of the species
    • Foulongne-Oriol M., et al. An expanded genetic linkage map of an intervarietal Agaricus bisporus var. bisporus×A. bisporus var. burnettii hybrid based on AFLP, SSR and CAPS markers sheds light on the recombination behaviour of the species. Fungal Genet. Biol. 2010, 47:226-236.
    • (2010) Fungal Genet. Biol. , vol.47 , pp. 226-236
    • Foulongne-Oriol, M.1
  • 26
    • 70349673822 scopus 로고    scopus 로고
    • Novel microsatellite markers suitable for genetic studies in the white button mushroom Agaricus bisporus
    • Foulongne-Oriol M., et al. Novel microsatellite markers suitable for genetic studies in the white button mushroom Agaricus bisporus. Appl. Microbiol. Biotechnol. 2009, 84:1125-1135.
    • (2009) Appl. Microbiol. Biotechnol. , vol.84 , pp. 1125-1135
    • Foulongne-Oriol, M.1
  • 27
    • 79952199692 scopus 로고    scopus 로고
    • Variable number of tandem repeat markers in the genome sequence of Mycosphaerella fijiensis, the causal agent of black leaf streak disease of banana (Musa spp.)
    • Garcia S.A., et al. Variable number of tandem repeat markers in the genome sequence of Mycosphaerella fijiensis, the causal agent of black leaf streak disease of banana (Musa spp.). Genet. Mol. Res. 2010, 9:2207-2212.
    • (2010) Genet. Mol. Res. , vol.9 , pp. 2207-2212
    • Garcia, S.A.1
  • 28
    • 34247403306 scopus 로고    scopus 로고
    • Biased distribution of microsatellite motifs in the rice genome
    • Grover A., et al. Biased distribution of microsatellite motifs in the rice genome. Mol. Genet. Genomics 2007, 277:469-480.
    • (2007) Mol. Genet. Genomics , vol.277 , pp. 469-480
    • Grover, A.1
  • 29
    • 79959277219 scopus 로고    scopus 로고
    • Current trends in microsatellite genotyping
    • Guichoux E., et al. Current trends in microsatellite genotyping. Mol. Ecol. Resour. 2011, 11:591-611.
    • (2011) Mol. Ecol. Resour. , vol.11 , pp. 591-611
    • Guichoux, E.1
  • 30
    • 0028273850 scopus 로고
    • Characterization of telomeric regions from Ustilago maydis
    • Guzman P.A., Sanchez J.G. Characterization of telomeric regions from Ustilago maydis. Microbiology 1994, 140:551-557.
    • (1994) Microbiology , vol.140 , pp. 551-557
    • Guzman, P.A.1    Sanchez, J.G.2
  • 31
    • 0028814184 scopus 로고
    • Hyphal morphology associated with strain instability in the commercial mushroom, Agaricus bisporus
    • Heath M.C., et al. Hyphal morphology associated with strain instability in the commercial mushroom, Agaricus bisporus. Mycologia 1995, 87:442-450.
    • (1995) Mycologia , vol.87 , pp. 442-450
    • Heath, M.C.1
  • 33
    • 0030481420 scopus 로고    scopus 로고
    • BSN, the primary determinant of basidial spore number and reproductive mode in Agaricus bisporus, maps to chromosome I
    • Imbernon M., et al. BSN, the primary determinant of basidial spore number and reproductive mode in Agaricus bisporus, maps to chromosome I. Mycologia 1996, 88:749-761.
    • (1996) Mycologia , vol.88 , pp. 749-761
    • Imbernon, M.1
  • 34
    • 1842737283 scopus 로고    scopus 로고
    • Role of transposable elements in the propagation of minisatellites in the rice genome
    • Inukai T. Role of transposable elements in the propagation of minisatellites in the rice genome. Mol. Genet. Genomics 2004, 271:220-227.
    • (2004) Mol. Genet. Genomics , vol.271 , pp. 220-227
    • Inukai, T.1
  • 35
    • 23844525077 scopus 로고    scopus 로고
    • Repbase Update, a database of eukaryotic repetitive elements
    • Jurka J., et al. Repbase Update, a database of eukaryotic repetitive elements. Cytogenet Genome Res. 2005, 110:462-467.
    • (2005) Cytogenet Genome Res. , vol.110 , pp. 462-467
    • Jurka, J.1
  • 36
    • 0032943978 scopus 로고    scopus 로고
    • IRAP and REMAP: two new retrotransposon-based DNA fingerprinting techniques
    • Kalendar R., et al. IRAP and REMAP: two new retrotransposon-based DNA fingerprinting techniques. Theor. Appl. Genet. 1999, 98:704-711.
    • (1999) Theor. Appl. Genet. , vol.98 , pp. 704-711
    • Kalendar, R.1
  • 37
    • 14544279926 scopus 로고    scopus 로고
    • Survey of simple sequence repeats in completed fungal genomes
    • Karaoglu H., et al. Survey of simple sequence repeats in completed fungal genomes. Mol. Biol. Evol. 2005, 22:639-649.
    • (2005) Mol. Biol. Evol. , vol.22 , pp. 639-649
    • Karaoglu, H.1
  • 38
    • 33646130830 scopus 로고    scopus 로고
    • Simple sequence repeats as advantageous mutators in evolution
    • Kashi Y., King D.G. Simple sequence repeats as advantageous mutators in evolution. Trends Genet. 2006, 22:253-259.
    • (2006) Trends Genet. , vol.22 , pp. 253-259
    • Kashi, Y.1    King, D.G.2
  • 39
    • 58149133711 scopus 로고    scopus 로고
    • Medium- and short-chain dehydrogenase/reductase gene and protein families: the SDR superfamily: functional and structural diversity within a family of metabolic and regulatory enzymes
    • Kavanagh K.L., et al. Medium- and short-chain dehydrogenase/reductase gene and protein families: the SDR superfamily: functional and structural diversity within a family of metabolic and regulatory enzymes. Cell. Mol. Life Sci. 2008, 65:3895-3906.
    • (2008) Cell. Mol. Life Sci. , vol.65 , pp. 3895-3906
    • Kavanagh, K.L.1
  • 40
    • 0028111371 scopus 로고
    • The heterothallic life cycle of Agaricus bisporus var. burnettii, and the inheritance of its tetrasporic trait
    • Kerrigan R.W., et al. The heterothallic life cycle of Agaricus bisporus var. burnettii, and the inheritance of its tetrasporic trait. Exp. Mycol. 1994, 18:193-210.
    • (1994) Exp. Mycol. , vol.18 , pp. 193-210
    • Kerrigan, R.W.1
  • 41
    • 85082782103 scopus 로고    scopus 로고
    • Characteristics of a large collection of wild edible mushroom germplasm: the Agaricus Resource Program. Centraalbureau voor Schimmelcultures, Baarn, The Netherlands.
    • Kerrigan, R.W.K., 1996. Characteristics of a large collection of wild edible mushroom germplasm: the Agaricus Resource Program. Centraalbureau voor Schimmelcultures, Baarn, The Netherlands.
    • (1996)
    • Kerrigan, R.W.K.1
  • 42
    • 77149174194 scopus 로고    scopus 로고
    • Diverse retrotransposons in Agaricus bisporus
    • Kerrigan R.W.K., et al. Diverse retrotransposons in Agaricus bisporus. Mushroom Sci. 2004, 16:75-83.
    • (2004) Mushroom Sci. , vol.16 , pp. 75-83
    • Kerrigan, R.W.K.1
  • 43
    • 39849087537 scopus 로고    scopus 로고
    • Simple sequence repeats in Neurospora crassa: distribution, polymorphism and evolutionary inference
    • Kim T.S., et al. Simple sequence repeats in Neurospora crassa: distribution, polymorphism and evolutionary inference. BMC Genom. 2008, 9:31.
    • (2008) BMC Genom. , vol.9 , pp. 31
    • Kim, T.S.1
  • 44
    • 79954438991 scopus 로고    scopus 로고
    • Survey and analysis of simple sequence repeats in the Laccaria bicolor genome, with development of microsatellite markers
    • Labbé J., et al. Survey and analysis of simple sequence repeats in the Laccaria bicolor genome, with development of microsatellite markers. Curr. Genet. 2011, 57:75-88.
    • (2011) Curr. Genet. , vol.57 , pp. 75-88
    • Labbé, J.1
  • 45
    • 79551681942 scopus 로고    scopus 로고
    • Comparative analysis of transposable elements in the melanogaster subgroup sequenced genomes
    • Lerat E., et al. Comparative analysis of transposable elements in the melanogaster subgroup sequenced genomes. Gene 2011, 473:100-109.
    • (2011) Gene , vol.473 , pp. 100-109
    • Lerat, E.1
  • 46
    • 0027787577 scopus 로고
    • Evidence for cytosine methylation in ribosomal-rna genes and in a family of dispersed repetitive DNA elements in Agaricus bisporus and selected other Agaricus species
    • Li A.M., Horgen P.A. Evidence for cytosine methylation in ribosomal-rna genes and in a family of dispersed repetitive DNA elements in Agaricus bisporus and selected other Agaricus species. Exp. Mycol. 1993, 17:356-361.
    • (1993) Exp. Mycol. , vol.17 , pp. 356-361
    • Li, A.M.1    Horgen, P.A.2
  • 47
    • 17444403234 scopus 로고    scopus 로고
    • TERMINUS - telomeric end-read mining IN unassembled sequences
    • Li W., et al. TERMINUS - telomeric end-read mining IN unassembled sequences. Bioinformatics 2005, 21:1695-1698.
    • (2005) Bioinformatics , vol.21 , pp. 1695-1698
    • Li, W.1
  • 48
    • 2442701496 scopus 로고    scopus 로고
    • Microsatellites within genes: structure, function, and evolution
    • Li Y.C., et al. Microsatellites within genes: structure, function, and evolution. Mol. Biol. Evol. 2004, 21:991-1007.
    • (2004) Mol. Biol. Evol. , vol.21 , pp. 991-1007
    • Li, Y.C.1
  • 49
    • 4644359310 scopus 로고    scopus 로고
    • A comparison of the nature and abundance of microsatellites in 14 fungal genomes
    • Lim S., et al. A comparison of the nature and abundance of microsatellites in 14 fungal genomes. Fungal Genet. Biol. 2004, 41:1025-1036.
    • (2004) Fungal Genet. Biol. , vol.41 , pp. 1025-1036
    • Lim, S.1
  • 50
    • 4344616881 scopus 로고    scopus 로고
    • Rapid recent growth and divergence of rice nuclear genomes
    • Ma J., Bennetzen J.L. Rapid recent growth and divergence of rice nuclear genomes. Proc. Natl. Acad. Sci. USA 2004, 101:12404-12410.
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 12404-12410
    • Ma, J.1    Bennetzen, J.L.2
  • 51
    • 70350245051 scopus 로고    scopus 로고
    • Hypervariable 3' UTR region of plant LTR-retrotransposons as a source of novel satellite repeats
    • Macas J., et al. Hypervariable 3' UTR region of plant LTR-retrotransposons as a source of novel satellite repeats. Gene 2009, 448:198-206.
    • (2009) Gene , vol.448 , pp. 198-206
    • Macas, J.1
  • 52
    • 40449120632 scopus 로고    scopus 로고
    • The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis
    • Martin F., et al. The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis. Nature 2008, 452:88-92.
    • (2008) Nature , vol.452 , pp. 88-92
    • Martin, F.1
  • 53
    • 77951144839 scopus 로고    scopus 로고
    • Perigord black trufflenome uncovers evolutionary origins and mechanisms of symbiosis
    • Martin F., et al. Perigord black trufflenome uncovers evolutionary origins and mechanisms of symbiosis. Nature 2010, 464:1033-1038.
    • (2010) Nature , vol.464 , pp. 1033-1038
    • Martin, F.1
  • 54
    • 0023478094 scopus 로고
    • Identification of healed terminal DNA fragments in linear minichromosomes of Schizosaccharomyces pombe
    • Matsumoto T., et al. Identification of healed terminal DNA fragments in linear minichromosomes of Schizosaccharomyces pombe. Mol. Cell. Biol. 1987, 7:4424-4430.
    • (1987) Mol. Cell. Biol. , vol.7 , pp. 4424-4430
    • Matsumoto, T.1
  • 55
    • 0037433054 scopus 로고    scopus 로고
    • LTR_STRUC: a novel search and identification program for LTR retrotransposons
    • McCarthy E.M., McDonald J.F. LTR_STRUC: a novel search and identification program for LTR retrotransposons. Bioinformatics 2003, 19:362-367.
    • (2003) Bioinformatics , vol.19 , pp. 362-367
    • McCarthy, E.M.1    McDonald, J.F.2
  • 56
    • 53049108022 scopus 로고    scopus 로고
    • Sub-telomere directed gene expression during initiation of invasive aspergillosis
    • McDonagh A., et al. Sub-telomere directed gene expression during initiation of invasive aspergillosis. PLoS Pathog. 2008, 4:e1000154.
    • (2008) PLoS Pathog. , vol.4
    • McDonagh, A.1
  • 57
    • 79961081499 scopus 로고    scopus 로고
    • DNA methylation regulates phenotype-dependent transcriptional activity in Candida albicans
    • Mishra P.K., et al. DNA methylation regulates phenotype-dependent transcriptional activity in Candida albicans. Proc. Natl. Acad. Sci. USA 2011, 108:11965-11970.
    • (2011) Proc. Natl. Acad. Sci. USA , vol.108 , pp. 11965-11970
    • Mishra, P.K.1
  • 58
    • 84867919345 scopus 로고    scopus 로고
    • The genome sequence of the Button Mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche
    • Morin E., et al. The genome sequence of the Button Mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche. Proc. Natl. Acad. Sci. USA 2012, 109:17501-17506.
    • (2012) Proc. Natl. Acad. Sci. USA , vol.109 , pp. 17501-17506
    • Morin, E.1
  • 59
    • 78651326629 scopus 로고    scopus 로고
    • Distribution and localization of microsatellites in the Perigord black truffle genome and identification of new molecular markers
    • Murat C., et al. Distribution and localization of microsatellites in the Perigord black truffle genome and identification of new molecular markers. Fungal Genet. Biol. 2011, 48:592-601.
    • (2011) Fungal Genet. Biol. , vol.48 , pp. 592-601
    • Murat, C.1
  • 60
    • 20444410449 scopus 로고    scopus 로고
    • Highly polymorphic DNA markers to specify strains of the ectomycorrhizal basidiomycete Tricholoma matsutake based on sigmamarY1, the long terminal repeat of gypsy-type retroelement marY1
    • Murata H., et al. Highly polymorphic DNA markers to specify strains of the ectomycorrhizal basidiomycete Tricholoma matsutake based on sigmamarY1, the long terminal repeat of gypsy-type retroelement marY1. Mycorrhiza 2005, 15:179-186.
    • (2005) Mycorrhiza , vol.15 , pp. 179-186
    • Murata, H.1
  • 61
    • 84855291327 scopus 로고    scopus 로고
    • LTR retrotransposons in Fungi
    • Muszewska A., et al. LTR retrotransposons in Fungi. PLoS One 2011, 6:e29425.
    • (2011) PLoS One , vol.6
    • Muszewska, A.1
  • 62
    • 67651189721 scopus 로고    scopus 로고
    • Genome-wide analysis of repetitive elements in Papaya
    • Nagarajan N., et al. Genome-wide analysis of repetitive elements in Papaya. Tropical Plant Biol. 2008, 1:191-201.
    • (2008) Tropical Plant Biol. , vol.1 , pp. 191-201
    • Nagarajan, N.1
  • 63
    • 84860511529 scopus 로고    scopus 로고
    • Insight into trade-off between wood decay and parasitism from the genome of a fungal forest pathogen
    • Olson A., et al. Insight into trade-off between wood decay and parasitism from the genome of a fungal forest pathogen. New Phytol. 2012, 194:1001-1013.
    • (2012) New Phytol. , vol.194 , pp. 1001-1013
    • Olson, A.1
  • 64
    • 71449100076 scopus 로고    scopus 로고
    • Mapping the tree of life: progress and prospects
    • Pace N.R. Mapping the tree of life: progress and prospects. Microbiol. Mol. Biol. Rev. 2009, 73:565-576.
    • (2009) Microbiol. Mol. Biol. Rev. , vol.73 , pp. 565-576
    • Pace, N.R.1
  • 65
    • 74549206771 scopus 로고    scopus 로고
    • The distribution of microsatellites in the Nasonia parasitoid wasp genome
    • Pannebakker B.A., et al. The distribution of microsatellites in the Nasonia parasitoid wasp genome. Insect Mol. Biol. 2010, 19(Suppl. 1):91-98.
    • (2010) Insect Mol. Biol. , vol.19 , Issue.SUPPL. 1 , pp. 91-98
    • Pannebakker, B.A.1
  • 66
    • 77951248356 scopus 로고    scopus 로고
    • Sequence-specific amplified polymorphism (ssap) technique to analyse Fusarium oxysporum.sp lactucae vcg 0300 isolate from lettuce
    • Pasquali M., et al. Sequence-specific amplified polymorphism (ssap) technique to analyse Fusarium oxysporum.sp lactucae vcg 0300 isolate from lettuce. J. Plant Pathol. 2008, 90:527-535.
    • (2008) J. Plant Pathol. , vol.90 , pp. 527-535
    • Pasquali, M.1
  • 67
    • 61649097078 scopus 로고    scopus 로고
    • Telomere organization in the ligninolytic basidiomycete Pleurotus ostreatus
    • Pérez G., et al. Telomere organization in the ligninolytic basidiomycete Pleurotus ostreatus. Appl. Environ. Microbiol. 2009, 75:1427-1436.
    • (2009) Appl. Environ. Microbiol. , vol.75 , pp. 1427-1436
    • Pérez, G.1
  • 68
    • 29144455282 scopus 로고    scopus 로고
    • De novo identification of repeat families in large genomes
    • Price A.L., et al. De novo identification of repeat families in large genomes. Bioinformatics 2005, 21(Suppl. 1):i351-i358.
    • (2005) Bioinformatics , vol.21 , Issue.SUPPL. 1
    • Price, A.L.1
  • 69
    • 0031460176 scopus 로고    scopus 로고
    • Chromosome ends: all the same under their caps
    • Pryde F.E., et al. Chromosome ends: all the same under their caps. Curr. Opin. Genet. Dev. 1997, 7:822-828.
    • (1997) Curr. Opin. Genet. Dev. , vol.7 , pp. 822-828
    • Pryde, F.E.1
  • 70
    • 84861182813 scopus 로고    scopus 로고
    • Genome evolution in filamentous plant pathogens: why bigger can be better
    • Raffaele S., Kamoun S. Genome evolution in filamentous plant pathogens: why bigger can be better. Nat. Rev. Microbiol. 2012, 10:417-430.
    • (2012) Nat. Rev. Microbiol. , vol.10 , pp. 417-430
    • Raffaele, S.1    Kamoun, S.2
  • 71
    • 84879014973 scopus 로고    scopus 로고
    • Basidiomycetes telomeres - a bioinformatic approach
    • In: Mahdavi, M.A. (Ed.), Bioinformatics - Trends and Methodologies
    • Ramirez, L., et al., 2011. Basidiomycetes telomeres - a bioinformatic approach. In: Mahdavi, M.A. (Ed.), Bioinformatics - Trends and Methodologies, pp. 393-424.
    • (2011) , pp. 393-424
    • Ramirez, L.1
  • 72
    • 33750219521 scopus 로고    scopus 로고
    • Organization of chromosome ends in the rice blast fungus, Magnaporthe oryzae
    • Rehmeyer C., et al. Organization of chromosome ends in the rice blast fungus, Magnaporthe oryzae. Nucleic Acids Res. 2006, 34:4685-4701.
    • (2006) Nucleic Acids Res. , vol.34 , pp. 4685-4701
    • Rehmeyer, C.1
  • 73
    • 0035865407 scopus 로고    scopus 로고
    • Integration of telomere sequences with the draft human genome sequence
    • Riethman H.C., et al. Integration of telomere sequences with the draft human genome sequence. Nature 2001, 409:948-951.
    • (2001) Nature , vol.409 , pp. 948-951
    • Riethman, H.C.1
  • 74
    • 0034303152 scopus 로고    scopus 로고
    • The polymorphic telomeres of the African Trypanosome Trypanosoma brucei
    • Rudenko G. The polymorphic telomeres of the African Trypanosome Trypanosoma brucei. Biochem. Soc. Trans. 2000, 28:536-540.
    • (2000) Biochem. Soc. Trans. , vol.28 , pp. 536-540
    • Rudenko, G.1
  • 75
    • 78751580443 scopus 로고    scopus 로고
    • Differentiation of epigenetic modifications between transposons and genes
    • Saze H., Kakutani T. Differentiation of epigenetic modifications between transposons and genes. Curr. Opin. Plant Biol. 2011, 14:81-87.
    • (2011) Curr. Opin. Plant Biol. , vol.14 , pp. 81-87
    • Saze, H.1    Kakutani, T.2
  • 76
    • 0025346476 scopus 로고
    • Characterization of telomere DNA from Neurospora crassa
    • Schechtman M.G. Characterization of telomere DNA from Neurospora crassa. Gene 1990, 88:159-165.
    • (1990) Gene , vol.88 , pp. 159-165
    • Schechtman, M.G.1
  • 77
    • 33645894192 scopus 로고    scopus 로고
    • Microsatellites for ecologists: a practical guide to using and evaluating microsatellite markers
    • Selkoe K.A., Toonen R.J. Microsatellites for ecologists: a practical guide to using and evaluating microsatellite markers. Ecol. Lett. 2006, 9:615-629.
    • (2006) Ecol. Lett. , vol.9 , pp. 615-629
    • Selkoe, K.A.1    Toonen, R.J.2
  • 78
    • 0021234973 scopus 로고
    • DNA sequences of telomeres maintained in yeast
    • Shampay J., et al. DNA sequences of telomeres maintained in yeast. Nature 1984, 310:154-157.
    • (1984) Nature , vol.310 , pp. 154-157
    • Shampay, J.1
  • 79
    • 35648929376 scopus 로고    scopus 로고
    • Mining microsatellites in eukaryotic genomes
    • Sharma P.C., et al. Mining microsatellites in eukaryotic genomes. Trends Biotechnol. 2007, 25:490-498.
    • (2007) Trends Biotechnol. , vol.25 , pp. 490-498
    • Sharma, P.C.1
  • 80
    • 85082782986 scopus 로고    scopus 로고
    • 1996-2010. RepeatMasker Open-3.0.
    • Smit, A., et al., 1996-2010. RepeatMasker Open-3.0.
    • Smit, A.1
  • 81
    • 0004491973 scopus 로고    scopus 로고
    • Genetics and breeding of Agaricus bisporus
    • In: Van Griensven, L.J. (Ed.), Science and Cultivation of Edible Fungi. Mushroom Science
    • Sonnenberg, A.S., 2000. Genetics and breeding of Agaricus bisporus. In: Van Griensven, L.J. (Ed.), Science and Cultivation of Edible Fungi. Mushroom Science, vol. XV, pp. 25-39.
    • (2000) , vol.15 , pp. 25-39
    • Sonnenberg, A.S.1
  • 82
    • 0032771566 scopus 로고    scopus 로고
    • Abr1, a transposon-like element in the genome of the cultivated mushroom Agaricus bisporus (Lange) Imbach
    • Sonnenberg A.S., et al. Abr1, a transposon-like element in the genome of the cultivated mushroom Agaricus bisporus (Lange) Imbach. Appl. Environ. Microbiol. 1999, 65:3347-3353.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 3347-3353
    • Sonnenberg, A.S.1
  • 83
    • 0029862576 scopus 로고    scopus 로고
    • Isolation of expressed sequence tags of Agaricus bisporus and their assignment to chromosomes
    • Sonnenberg A.S., et al. Isolation of expressed sequence tags of Agaricus bisporus and their assignment to chromosomes. Appl. Environ. Microbiol. 1996, 62:4542-4547.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 4542-4547
    • Sonnenberg, A.S.1
  • 84
    • 0000270679 scopus 로고
    • An efficient protoplasting regeneration system for Agaricus bisporus and Agaricus bitorquis
    • Sonnenberg A.S., et al. An efficient protoplasting regeneration system for Agaricus bisporus and Agaricus bitorquis. Curr. Microbiol. 1988, 17:285-291.
    • (1988) Curr. Microbiol. , vol.17 , pp. 285-291
    • Sonnenberg, A.S.1
  • 85
    • 84871815814 scopus 로고    scopus 로고
    • Breeding and strain protection in the button mushroom Agaricus bisporus
    • In: Savoie, J.M, Foulongne-Oriol, M., Largeteau, M., Barroso, G. (Eds), Proceedings of the7th International Conference on Mushroom Biology and Mushroom Products, Arcachon, France
    • Sonnenberg, A.S.M., et al., 2011. Breeding and strain protection in the button mushroom Agaricus bisporus. In: Savoie, J.M, Foulongne-Oriol, M., Largeteau, M., Barroso, G. (Eds), Proceedings of the7th International Conference on Mushroom Biology and Mushroom Products, Arcachon, France, pp. 7-15..
    • (2011) , pp. 7-15
    • Sonnenberg, A.S.M.1
  • 86
    • 84861127871 scopus 로고    scopus 로고
    • Mushroom breeding: hurdles and challenges
    • In: Lelley, J.I., Buswell, J.A. (Eds.), Proceedings of the Sixth International Conference on Mushroom Biology and Mushroom Products. GAMU GmbH, Institut fur Pilzforschung; Krefeld; Germany Bonn, Germany
    • Sonnenberg, A.S.M., et al., 2008. Mushroom breeding: hurdles and challenges. In: Lelley, J.I., Buswell, J.A. (Eds.), Proceedings of the Sixth International Conference on Mushroom Biology and Mushroom Products. GAMU GmbH, Institut fur Pilzforschung; Krefeld; Germany Bonn, Germany, pp. 96-103.
    • (2008) , pp. 96-103
    • Sonnenberg, A.S.M.1
  • 87
    • 78650122420 scopus 로고    scopus 로고
    • Genome expansion and gene loss in powdery mildew fungi reveal tradeoffs in extreme parasitism
    • Spanu P.D., et al. Genome expansion and gene loss in powdery mildew fungi reveal tradeoffs in extreme parasitism. Science 2010, 330:1543-1546.
    • (2010) Science , vol.330 , pp. 1543-1546
    • Spanu, P.D.1
  • 88
    • 77955350734 scopus 로고    scopus 로고
    • Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus)
    • Stajich J.E., et al. Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus). Proc. Natl. Acad. Sci. USA 2010, 107:11889-11894.
    • (2010) Proc. Natl. Acad. Sci. USA , vol.107 , pp. 11889-11894
    • Stajich, J.E.1
  • 89
    • 4344578499 scopus 로고    scopus 로고
    • Development of VNTR markers for two Fusarium graminearum clade species
    • Suga H., et al. Development of VNTR markers for two Fusarium graminearum clade species. Mol. Ecol. Notes 2004, 4:468-470.
    • (2004) Mol. Ecol. Notes , vol.4 , pp. 468-470
    • Suga, H.1
  • 90
    • 4143152817 scopus 로고    scopus 로고
    • Gypsy-like retrotransposons in Pyrenophora: an abundant and informative class of molecular markers
    • Taylor E.J.A., et al. Gypsy-like retrotransposons in Pyrenophora: an abundant and informative class of molecular markers. Genome 2004, 47:519-525.
    • (2004) Genome , vol.47 , pp. 519-525
    • Taylor, E.J.A.1
  • 91
    • 77953807770 scopus 로고    scopus 로고
    • Repeat elements and the Arabidopsis DNA methylation landscape
    • Teixeira F.K., Colot V. Repeat elements and the Arabidopsis DNA methylation landscape. Heredity (Edinb). 2010, 105:14-23.
    • (2010) Heredity (Edinb). , vol.105 , pp. 14-23
    • Teixeira, F.K.1    Colot, V.2
  • 92
    • 78649775753 scopus 로고    scopus 로고
    • Multiple-locus variable-number tandem repeat analysis for molecular typing of Aspergillus fumigatus
    • Thierry S., et al. Multiple-locus variable-number tandem repeat analysis for molecular typing of Aspergillus fumigatus. BMC Microbiol. 2010, 10:315.
    • (2010) BMC Microbiol. , vol.10 , pp. 315
    • Thierry, S.1
  • 93
    • 0027968068 scopus 로고
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson J.D., et al. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 1994, 22:4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1
  • 94
    • 33745033975 scopus 로고    scopus 로고
    • The role of transposable element clusters in genome evolution and loss of synteny in the rice blast fungus Magnaporthe oryzae
    • Thon M.R., et al. The role of transposable element clusters in genome evolution and loss of synteny in the rice blast fungus Magnaporthe oryzae. Genome Biol. 2006, 7:R16.
    • (2006) Genome Biol. , vol.7
    • Thon, M.R.1
  • 95
    • 25144494777 scopus 로고    scopus 로고
    • Intragenic tandem repeats generate functional variability
    • Verstrepen K.J., et al. Intragenic tandem repeats generate functional variability. Nat. Genet. 2005, 37:986-990.
    • (2005) Nat. Genet. , vol.37 , pp. 986-990
    • Verstrepen, K.J.1
  • 96
    • 0030991387 scopus 로고    scopus 로고
    • Genetic distribution of Bare-1-like retrotransposable elements in the barley genome revealed by sequence-specific amplification polymorphisms (S-SAP)
    • Waugh R., et al. Genetic distribution of Bare-1-like retrotransposable elements in the barley genome revealed by sequence-specific amplification polymorphisms (S-SAP). Mol. Gen. Genet. 1997, 253:687-694.
    • (1997) Mol. Gen. Genet. , vol.253 , pp. 687-694
    • Waugh, R.1
  • 97
    • 0037277240 scopus 로고    scopus 로고
    • Genetic diversity in yeast assessed with whole-genome oligonucleotide arrays
    • Winzeler E.A., et al. Genetic diversity in yeast assessed with whole-genome oligonucleotide arrays. Genetics 2003, 163:79-89.
    • (2003) Genetics , vol.163 , pp. 79-89
    • Winzeler, E.A.1
  • 98
    • 0036944312 scopus 로고    scopus 로고
    • Repetitive DNA elements in fungi (Mycota): impact on genomic architecture and evolution
    • Wostemeyer J., Kreibich A. Repetitive DNA elements in fungi (Mycota): impact on genomic architecture and evolution. Curr. Genet. 2002, 41:189-198.
    • (2002) Curr. Genet. , vol.41 , pp. 189-198
    • Wostemeyer, J.1    Kreibich, A.2
  • 99
    • 0043026711 scopus 로고    scopus 로고
    • Effects of recombination rate and gene density on transposable element distributions in Arabidopsis thaliana
    • Wright S.I., et al. Effects of recombination rate and gene density on transposable element distributions in Arabidopsis thaliana. Genome Res. 2003, 13:1897-1903.
    • (2003) Genome Res. , vol.13 , pp. 1897-1903
    • Wright, S.I.1
  • 100
    • 62549126963 scopus 로고    scopus 로고
    • Characterization of chromosome ends in the filamentous fungus Neurospora crassa
    • Wu C., et al. Characterization of chromosome ends in the filamentous fungus Neurospora crassa. Genetics 2009, 181:1129-1145.
    • (2009) Genetics , vol.181 , pp. 1129-1145
    • Wu, C.1
  • 101
    • 77952355762 scopus 로고    scopus 로고
    • Genome-wide evolutionary analysis of eukaryotic DNA methylation
    • Zemach A., et al. Genome-wide evolutionary analysis of eukaryotic DNA methylation. Science 2010, 328:916-919.
    • (2010) Science , vol.328 , pp. 916-919
    • Zemach, A.1
  • 102
    • 77956504685 scopus 로고    scopus 로고
    • Evolution of eukaryotic DNA methylation and the pursuit of safer sex
    • Zemach A., Zilberman D. Evolution of eukaryotic DNA methylation and the pursuit of safer sex. Curr. Biol. 2010, 20:R780-R785.
    • (2010) Curr. Biol. , vol.20
    • Zemach, A.1    Zilberman, D.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.