Novel microsatellite markers suitable for genetic studies in the white button mushroom Agaricus bisporus

Applied Microbiology and Biotechnology

Volumn 84, Issue 6, 2009, Pages 1125-1135

  Foulongne Oriol, Marie ^a   Spataro, Cathy ^a   Savoie, Jean Michel ^a  

^a CEMAGREF   (France)

Author keywords

Agaricus bisporus; Genetic diversity; SSR; Strain typing

Indexed keywords

AGARICUS BISPORUS; BISPORUS; BUTTON MUSHROOM; GENETIC ANALYSIS; GENETIC DIVERSITY; GENETIC STUDIES; GENETIC VARIATION; GENOMIC LIBRARIES; HETEROZYGOSITY; MICRO SATELLITE; MICROSATELLITE MARKERS; MOLECULAR CHARACTERISATION; MOLECULAR MARKER; POPULATION STRUCTURES; PUBLIC DATABASE; SINGLE SEQUENCE REPEATS; SSR; SSR MARKERS; STRAIN TYPING; UNIQUE SEQUENCE;

CLUSTER ANALYSIS; CULTIVATION; GENES; KNOWLEDGE BASED SYSTEMS; SEMICONDUCTOR RELAYS; STRAIN;

LINGUISTICS;

MICROSATELLITE DNA;

ALLELE; CLUSTER ANALYSIS; CULTIVAR; DATABASE; DNA FINGERPRINTING; DOMINANCE; GENETIC MARKER; GENETIC VARIATION; HETEROZYGOSITY; HYBRID; INTRASPECIFIC VARIATION; MUSHROOM; WILD POPULATION;

AGARICUS BISPORUS; ANIMAL CELL; ARTICLE; CONTROLLED STUDY; FUNGAL STRAIN; GENE LIBRARY; GENE LOCUS; GENOTYPE; HETEROZYGOSITY; HYBRID; INTRASPECIFIC VARIATION; MICROSATELLITE MARKER; NONHUMAN; NUCLEOTIDE SEQUENCE; POPULATION GENETIC STRUCTURE; WILD TYPE;

AGARICUS; DNA FINGERPRINTING; DNA, FUNGAL; GENETIC VARIATION; MICROSATELLITE REPEATS; PHYLOGENY; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY;

AGARICUS BISPORUS;

EID: 70349673822     PISSN: 01757598     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00253-009-2030-8     Document Type: Article

References (47)

1. G Barroso AS Sonnenberg LJ Van Griensven J Labarere 2000 Molecular cloning of a widely distributed microsatellite core sequence from the cultivated mushroom Agaricus bisporus Fungal Genet Biol 31 115 123 10.1006/fgbi.2000.1239 1:CAS:528:DC%2BD3MXhtV2nsr0%3D (Pubitemid 32182240)
2. AM Bowcock A Ruiz-Linares J Tomfohrde E Minch JR Kidd LL Cavalli-Scorza 1994 High resolution of human evolutionary trees with polymorphic microsatellites Nature 368 455 457 10.1038/368455a0 1:STN:280: DyaK2c7otFShsA%3D%3D
3. B Budowle R Chakraborty AM Giusti AJ Eisenberg RC Allen 1991 Analysis of the VNTR locus D1S80 by the PCR followed by high-resolution PAGE Am J Hum Genet 48 137 144 1:CAS:528:DyaK3MXmt1GgtLc%3D
4. FS Bueno A Romão M Wach WL Araùjo L Azevedo 2008 Variability in commercial and wild isolates of Agaricus species in Brazil Mushroom Sci 17 135 145 1:CAS:528:DC%2BD1MXjsV2nsLc%3D
5. PA Butcher S Decroocq Y Gray GF Moran 2000 Development, inheritance and cross-species amplification of microsatellite markers from Acacia mangium Theor Appl Genet 101 1282 1290 10.1007/s001220051608 1:CAS:528:DC%2BD3MXnvFalsg%3D%3D (Pubitemid 32045025)
6. P Callac 1994 Prospections pour la recherché d' Agaricus bisporus en France: contexte historique et scientifique, premiers resultants Bull Soc Mycol 110 145 165
7. P Callac C Billette M Imbernon RW Kerrigan 1993 Morphological, genetic, and interfertility analyses reveal a novel, tetrasporic variety of Agaricus bisporus from the Sonoran desert of California Mycologia 85 835 851 10.2307/3760617
8. P Callac M Imbernon J Guinberteau L Pirobe S Granit JM Olivier 2000 Discovery of a wild Mediterranean population of Agaricus bisporus, and its usefulness for breeding work Mushroom Sci 15 245 252 1:CAS:528: DC%2BD3MXislegtbw%3D
9. P Callac I Theochari RW Kerrigan 2002 The germplasm of Agaricus bisporus: main results after ten years of collecting in France, in Greece and in North America Acta Hortic 579 49 55
10. P Callac IJ de Haut M Imbernon J Ginberteau C Desmerger I Theochari 2003 A novel homothallic variety of Agaricus bisporus comprises rare tetrasporic isolates from Europe Mycologia 95 222 231 10.2307/3762033 1:CAS:528: DC%2BD3sXktlGktr8%3D
11. PY De La Bastide A Sonnenberg L Van Griensven JB Anderson PA Horgen 1997 Mitochondrial haplotype influences mycelial growth of Agaricus bisporus heterokaryons Appl Environ Microbiol 63 3426 3431
12. C Dutech J Enjalbert E Fournier F Delmotte B Barrès J Carlier D Tharreau T Giraud 2007 Challenges of microsatellite isolation in fungi Fungal Genet Biol 44 933 949 10.1016/j.fgb.2007.05.003 1:CAS:528:DC%2BD2sXhtVSjsrrK (Pubitemid 47334889)
13. KJ Edwards JH Barker A Daly C Jones A Karp 1996 Microsatellite libraries enriched for several microsatellite sequences in plants Biotechniques 20 758 760 1:CAS:528:DyaK28XislCjt7k%3D (Pubitemid 126507844)
14. G Fritsche 1983 Breeding Agaricus bisporus at the mushroom experimental station, Horst Mushroom J 122 49 53
15. SB Goodwin TA Van Der Lee JR Cavaletto B Hekkert CF Crane GH Kema 2007 Identification and genetic mapping of highly polymorphic microsatellite loci from an EST database of the Septoria tritici blotch pathogen Mycosphaerella graminicola Fungal Genet Biol 44 398 414 10.1016/j.fgb.2006.09.004 1:CAS:528:DC%2BD2sXjs12gurw%3D (Pubitemid 46483137)
16. XJ Guan L Xu YC Shao ZR Wang FS Chen 2008 Differentiation of commercial strains of Agaricus species in China with inter-simple sequence repeat marker World J Microbiol Biotechnol 24 1617 1622 10.1007/s11274-007-9647-5 1:CAS:528:DC%2BD1cXnsVCqtr4%3D
17. MJ Hayden TM Nguyen A Waterman KJ Chalmers 2008 Multiplex-ready PCR: a new method for multiplexed SSR and SNP genotyping BMC Genomics 9 80 10.1186/1471-2164-9-80
18. O Henegariu NA Heerema SR Dlouhy GH Vance PH Vogt 1997 Multiplex PCR: critical parameters and step-by-step protocol Biotechniques 23 504 511 1:CAS:528:DyaK2sXmtVSnsrw%3D
19. JL Jany J Bousquet DP Khasa 2003 Microsatellite markers for Hebeloma species developed from expressed sequence tags in the ectomycorrhizal fungus Hebeloma cylindrosporum Mol Ecol Notes 3 659 661 10.1046/j.1471-8286.2003.00537. x 1:CAS:528:DC%2BD2cXks12qsg%3D%3D (Pubitemid 37496787)
20. JL Jany J Bousquet A Gagne DP Khasa 2006 Simple sequence repeat (SSR) markers in the ectomycorrhizal fungus Laccaria bicolor for environmental monitoring of introduced strains and molecular ecology applications Mycol Res 110 51 59 10.1016/j.mycres.2005.09.011 1:CAS:528:DC%2BD28XisFCmur0%3D (Pubitemid 44051520)
21. H Karaoglu CM Lee W Meyer 2005 Survey of simple sequence repeats in completed fungal genomes Mol Biol Evol 22 639 649 10.1093/molbev/msi057 1:CAS:528:DC%2BD2MXhs1Kru7Y%3D (Pubitemid 40299513)
22. C Kaye J Milazzo S Rozenfeld MH Lebrun D Tharreau 2003 The development of simple sequence repeat markers for Magnaporthe grisea and their integration into an established genetic linkage map Fungal Genet Biol 40 207 214 10.1016/j.fgb.2003.08.001 1:CAS:528:DC%2BD3sXos1Chsro%3D (Pubitemid 37346416)
23. RW Kerrigan 1992 Strategies for the efficient recovery of Agaricus bisporus homokaryons Mycologia 84 575 579 10.2307/3760324
24. RW Kerrigan 1995 Global genetic-resources for Agaricus breeding and cultivation Can J Bot 73 S973 S979 10.1139/b95-347
25. RW Kerrigan M Imbernon P Callac C Billette JM Olivier 1994 The heterothallic life cycle of Agaricus bisporus var. burnetti, and the inheritance of its tetrasporic trait Exp Mycol 18 193 210 10.1006/emyc.1994.1020 (Pubitemid 24277214)
26. RW Kerrigan DB Carvalho PA Horgen JB Anderson 1995 Indigenous and introduced populations of Agaricus bisporus, the cultivated button mushroom, in eastern and western Canada: implications for population biology, resource management, and conservation of genetic diversity Can J Bot 73 1925 1938 10.1139/b95-205
27. J Labbe X Zhang T Yin J Schmutz J Grimwood F Martin GA Tuskan F Le Tacon 2008 A genetic linkage map for the ectomycorrhizal fungus Laccaria bicolor and its alignment to the whole-genome sequence assemblies New Phytol 180 316 328 10.1111/j.1469-8137.2008.02614.x 1:CAS:528:DC%2BD1cXhtlKru7zI
28. S Lim L Notley-McRobb M Lim DA Carter 2004 A comparison of the nature and abundance of microsatellites in 14 fungal genomes Fungal Genet Biol 41 1025 1036 10.1016/j.fgb.2004.08.004 1:CAS:528:DC%2BD2cXot1Wrs70%3D (Pubitemid 39304099)
29. MG Loftus D Moore TJ Elliott 1988 DNA polymorphisms in commercial and wild strains of the cultivated mushroom, Agaricus bisporus Theor Appl Genet 76 712 718 10.1007/BF00303517
30. MG Loftus L Boutchi-King C Robles 2000 Use of SCAR markers for cap color in Agaricus bisporus breeding programs Mushroom Sci 15 201 205 1:CAS:528:DC%2BD3MXislegtLk%3D
31. N Mathimaran L Falquet K Ineichen C Picard D Redecker T Boller A Wiemken 2008 Microsatellites for disentangling underground networks: strain-specific identification of Glomus intraradices, an arbuscular mycorrhizal fungus Fungal Genet Biol 45 812 817 10.1016/j.fgb.2008.02.009 1:CAS:528:DC%2BD1cXmtVSmu7w%3D
32. AJ Moore MP Challen PJ Warner TJ Elliott 2001 RAPD discrimination of Agaricus bisporus mushroom cultivars Appl Microbiol Biotechnol 55 742 749 10.1007/s002530000588 1:CAS:528:DC%2BD3MXlt1KqsLc%3D (Pubitemid 32661584)
33. L Ramirez V Muez M Alfonso AG Barrenechea L Alfonso AG Pisabarro 2001 Use of molecular markers to differentiate between commercial strains of the button mushroom Agaricus bisporus FEMS Microbiol Lett 198 45 48 10.1016/S0378-1097(01) 00117-3 1:CAS:528:DC%2BD3MXivFehs7s%3D (Pubitemid 32452239)
34. M Raymond F Rousset 1995 Genepop (version-1.2)-population genetics software for exact tests and ecumenicism J Heredity 86 248 249
35. DJ Royse B May 1982 Genetic relatedness and its application in selective breeding of Agaricus brunnescens Mycologia 74 569 575 10.2307/3792744
36. DJ Royse B May 1982 Use of isozyme variation to identify genotypic classes of Agaricus brunnescens Mycologia 74 93 102 10.2307/3792632 1:CAS:528:DyaL38XkvVyqs78%3D
37. DJ Royse B May 1989 Identification and use of three new biochemical markers in Agaricus bisporus Agric Biol Chem 53 2861 2866 1:CAS:528: DyaK3cXjtlCltw%3D%3D
38. S Rozen H Skaletsky 2000 Primer3 on the WWW for general users and for biologist programmers Methods Mol Biol 132 365 386 1:CAS:528:DyaK1MXmslKqsbo%3D
39. KA Selkoe RJ Toonen 2006 Microsatellites for ecologists: a practical guide to using and evaluating microsatellite markers Ecol Lett 9 615 629 10.1111/j.1461-0248.2006.00889.x
40. AS Sonnenberg 2000 Genetics and breeding of Agaricus bisporus Mushroom Sci 15 25 39 1:CAS:528:DC%2BD3MXislegt7w%3D
41. AS Sonnenberg PC Van Loon LJ Van Griensven 1991 The occurence of mitochondrial genotypes and inheritance of mitochondria in the cultivated mushroom Agaricus bisporus Mushroom Sci 13 85 92
42. J Squirrell PM Hollingsworth M Woodhead J Russell AJ Lowe M Gibby W Powell 2003 How much effort is required to isolate nuclear microsatellites from plants? Mol Ecol 12 1339 1348 10.1046/j.1365-294X.2003.01825.x 1:CAS:528:DC%2BD3sXltlKhtL8%3D (Pubitemid 36708443)
43. R Staden 1996 The Staden sequence analysis package Mol Biotechnol 5 233 241 10.1007/BF02900361 1:CAS:528:DyaK28Xlt1Sgsb8%3D
44. M Staniaszek W Marczewski K Szudyga J Maszkiewicz A Czaplicki G Gian 2002 Genetic relationship between Polish and Chinese strains of the mushroom Agaricus bisporus (Lange) Sing., determined by the RAPD method J Appl Genet 43 43 47
45. J Xu RW Kerrigan P Callac PA Horgen JB Anderson 1997 Genetic structure of natural populations of Agaricus bisporus, the commercial button mushroom J Hereditary 88 482 488
46. J Xu C Desmerger P Callac 2002 Fine-scale genetic analyses reveal unexpected spatial-temporal heterogeneity in two natural populations of the commercial mushroom Agaricus bisporus Microbiology 148 1253 1262 1:CAS:528:DC%2BD38XktFShsL0%3D
47. Y Zheng G Zhang F Lin Z Wang G Jin L Yang Y Wang X Chen Z Xu X Zhao H Wang J Lu G Lu W Wu 2008 Development of microsatellite markers and construction of genetic map in rice blast pathogen Magnaporthe grisea Fungal Genet Biol 45 1340 1347 10.1016/j.fgb.2008.07.012 1:CAS:528:DC%2BD1cXht1ejtbnM