Multiple-locus variable-number tandem repeat analysis for molecular typing of Aspergillus fumigatus

BMC Microbiology

Volumn 10, Issue , 2010, Pages

  Thierry, Simon ^a   Wang, Dongying ^a,b   Arné, Pascal ^c   Deville, Manjula ^c   De Bruin, Barbara ^c   Nieguitsila, Adélade ^c   Pourcel, Christine ^d   Laroucau, Karine ^a   Chermette, René ^c   Huang, Weiyi ^b   Botterel, Françoise ^e   Guillot, Jacques ^c  

^a FRENCH AGENCY FOR FOOD   (France)

^b GUANGXI UNIVERSITY   (China)

^c ECOLE NATIONALE VÉTÉRINAIRE D ALFORT   (France)

^d UNIVERSITÉ PARIS SACLAY   (France)

^e FACULTÉ DE MÉDECINE   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; ASPERGILLUS FUMIGATUS; CHINA; CHLAMYDOPHILA PSITTACI; CHROMOSOME 1; CHROMOSOME 5; CHROMOSOME 6; CHROMOSOME 8; DUCK; FRANCE; GEOGRAPHIC ORIGIN; HATCHERY; MOLECULAR EPIDEMIOLOGY; MOLECULAR TYPING; MOROCCO; NONHUMAN; POULTRY FARMING; REPRODUCIBILITY; VARIABLE NUMBER OF TANDEM REPEAT; ANIMAL; ANIMAL DISEASE; ASPERGILLOSIS; BACTERIUM IDENTIFICATION; BIRD DISEASE; CLASSIFICATION; EVALUATION; GENETIC PROCEDURES; GENETICS; HUMAN; ISOLATION AND PURIFICATION; METHODOLOGY; MICROBIOLOGY; MOLECULAR GENETICS; PHYLOGENY; TURKEY (BIRD);

ASPERGILLUS FUMIGATUS; AVES; CHLAMYDOPHILA PSITTACI; FUNGI;

FUNGAL DNA;

ANIMALS; ASPERGILLOSIS; ASPERGILLUS FUMIGATUS; BACTERIAL TYPING TECHNIQUES; BIRD DISEASES; DNA, FUNGAL; DUCKS; GENETIC TECHNIQUES; HUMANS; MINISATELLITE REPEATS; MOLECULAR SEQUENCE DATA; PHYLOGENY; TURKEYS;

EID: 78649775753     PISSN: 14712180     EISSN: 14712180     Source Type: Journal    
DOI: 10.1186/1471-2180-10-315     Document Type: Article

References (32)

1. Assessment of a commercial sandwich ELISA in the diagnosis of aspergillosis in falcons. B Arca-Ruibal U Wernery R Zachariah TA Bailey A Di Somma C Silvanose P McKinney, Vet Rec 2006 158 13 442 444 10.1136/vr.158.13.442 16581995
2. Comparative susceptibility of chickens, turkeys and Coturnix quail to aspergillosis. HM Ghori SA Edgar, Poult Sci 1973 52 6 2311 2315 4596721
3. Aspergillosis in mammals and birds: impact on veterinary medicine. LA Tell, Med Mycol 2005 43 Suppl 1 71 73 10.1080/13693780400020089 16110795
4. Minisatellites: mutability and genome architecture. G Vergnaud F Denoeud, Genome Res 2000 10 7 899 907 10.1101/gr.10.7.899 10899139
5. High resolution typing of Chlamydophila psittaci by multilocus VNTR analysis (MLVA). K Laroucau S Thierry F Vorimore K Blanco E Kaleta R Hoop S Magnino D Vanrompay K Sachse GS Myers PM Bavoil G Vergnaud C Pourcel, Infect Genet Evol 2008 8 2 171 181 10.1016/j.meegid.2007.12.002 18242149
6. Genotyping of Chlamydophila abortus strains by multilocus VNTR analysis. K Laroucau F Vorimore C Bertin KY Mohamad S Thierry W Hermann C Maingourd C Pourcel D Longbottom S Magnino K Sachse E Vretou A Rodolakis, Vet Microbiol 2009 137 3-4 335 344 10.1016/j.vetmic.2009.01.029 19217221
7. High resolution, on-line identification of strains from the Mycobacterium tuberculosis complex based on tandem repeat typing. P Le Fleche M Fabre F Denoeud JL Koeck G Vergnaud, BMC Microbiol 2002 2 37 10.1186/1471-2180-2-37 12456266
8. A tandem repeats database for bacterial genomes: application to the genotyping of Yersinia pestis and Bacillus anthracis. P Le Fleche Y Hauck L Onteniente A Prieur F Denoeud V Ramisse P Sylvestre G Benson F Ramisse G Vergnaud, BMC Microbiol 2001 1 2 10.1186/1471-2180-1-2 11299044
9. Tandem repeats analysis for the high resolution phylogenetic analysis of Yersinia pestis. C Pourcel F Andre-Mazeaud H Neubauer F Ramisse G Vergnaud, BMC Microbiol 2004 4 22 10.1186/1471-2180-4-22 15186506
10. Improved multiple-locus variable-number tandem-repeat assay for Staphylococcus aureus genotyping, providing a highly informative technique together with strong phylogenetic value. C Pourcel K Hormigos L Onteniente O Sakwinska RH Deurenberg G Vergnaud, J Clin Microbiol 2009 47 10 3121 3128 10.1128/JCM.00267-09 19710277
11. Multiple-locus variable-number tandem repeat analysis of Dutch Bordetella pertussis strains reveals rapid genetic changes with clonal expansion during the late 1990s. LM Schouls HG van der Heide L Vauterin P Vauterin FR Mooi, J Bacteriol 2004 186 16 5496 5505 10.1128/JB.186.16.5496-5505.2004 15292152
12. Multilocus variable-number tandem repeat analysis for molecular typing and phylogenetic analysis of Shigella flexneri. YW Wang H Watanabe DC Phung SK Tung YS Lee J Terajima SY Liang CS Chiou, BMC Microbiol 2009 9 278 10.1186/1471-2180-9-278 20042119
13. Multiple-locus variable-number tandem-repeat analysis for rapid typing of Candida glabrata. F Grenouillet L Millon JM Bart S Roussel I Biot E Didier AS Ong R Piarroux, J Clin Microbiol 2007 45 11 3781 3784 10.1128/JCM.01603-07 17855568
14. Aspergillus lentulus sp. nov., a new sibling species of A. fumigatus. SA Balajee JL Gribskov E Hanley D Nickle KA Marr, Eukaryot Cell 2005 4 3 625 632 10.1128/EC.4.3.625-632.2005 15755924
15. Molecular studies reveal frequent misidentification of Aspergillus fumigatus by morphotyping. SA Balajee D Nickle J Varga KA Marr, Eukaryot Cell 2006 5 10 1705 1712 10.1128/EC.00162-06 17030996
16. Tandem repeats finder: a program to analyze DNA sequences. G Benson, Nucleic Acids Res 1999 27 2 573 580 10.1093/nar/27.2.573 9862982
17. Numerical index of the discriminatory ability of typing systems: an application of Simpson's index of diversity. PR Hunter MA Gaston, J Clin Microbiol 1988 26 11 2465 2466 3069867
18. On-line resources for bacterial micro-evolution studies using MLVA or CRISPR typing. I Grissa P Bouchon C Pourcel G Vergnaud, Biochimie 2008 90 4 660 668 10.1016/j.biochi.2007.07.014 17822824
19. Use of randomly amplified polymorphic DNA markers to distinguish isolates of Aspergillus fumigatus. A Aufauvre-Brown J Cohen DW Holden, J Clin Microbiol 1992 30 11 2991 2993 1360475
20. Restriction endonuclease analysis of total cellular DNA of Aspergillus fumigatus isolates of geographically and epidemiologically diverse origin. DW Denning KV Clemons LH Hanson DA Stevens, J Infect Dis 1990 162 5 1151 1158 1977804
21. Restriction fragment length polymorphisms in isolates of Aspergillus fumigatus probed with part of the intergenic spacer region from the ribosomal RNA gene complex of Aspergillus nidulans. CL Spreadbury BW Bainbridge J Cohen, J Gen Microbiol 1990 136 10 1991 1994 1980128
22. AFLP: a new technique for DNA fingerprinting. P Vos R Hogers M Bleeker M Reijans T van de Lee M Hornes A Frijters J Pot J Peleman M Kuiper M Zabeau, Nucleic Acids Res 1995 23 21 4407 4414 10.1093/nar/23.21.4407 7501463
23. Utility of a microsatellite assay for identifying clonally related outbreak isolates of Aspergillus fumigatus. SA Balajee HA de Valk BA Lasker JF Meis CH Klaassen, J Microbiol Methods 2008 73 3 252 256 10.1016/j.mimet.2008.02. 011 18375005
24. Microsatellite markers for typing Aspergillus fumigatus isolates. E Bart-Delabesse JF Humbert E Delabesse S Bretagne, J Clin Microbiol 1998 36 9 2413 2418 9705365
25. Use of a novel panel of nine short tandem repeats for exact and high-resolution fingerprinting of Aspergillus fumigatus isolates. HA de Valk JF Meis IM Curfs K Muehlethaler JW Mouton CH Klaassen, J Clin Microbiol 2005 43 8 4112 4120 10.1128/JCM.43.8.4112-4120.2005 16081958
26. Comparison of two highly discriminatory molecular fingerprinting assays for analysis of multiple Aspergillus fumigatus isolates from patients with invasive aspergillosis. HA de Valk JF Meis BE de Pauw PJ Donnelly CH Klaassen, J Clin Microbiol 2007 45 5 1415 1419 10.1128/JCM.02423-06 17376887
27. Comparison of microsatellite length polymorphism and multilocus sequence typing for DNA-Based typing of Candida albicans. D Garcia-Hermoso O Cabaret G Lecellier M Desnos-Ollivier D Hoinard D Raoux JM Costa F Dromer S Bretagne, J Clin Microbiol 2007 45 12 3958 3963 10.1128/JCM.01261-07 17928418
28. Multilocus sequence typing of the pathogenic fungus Aspergillus fumigatus. JM Bain A Tavanti AD Davidson MD Jacobsen D Shaw NA Gow FC Odds, J Clin Microbiol 2007 45 5 1469 1477 10.1128/JCM.00064-07 17376886
29. Characterization of a novel gene for strain typing reveals substructuring of Aspergillus fumigatus across North America. SA Balajee ST Tay BA Lasker SF Hurst AP Rooney, Eukaryot Cell 2007 6 8 1392 1399 10.1128/EC.00164-07 17557880
30. Utility of CSP typing to sub-type clinical Aspergillus fumigatus isolates and proposal for a new CSP type nomenclature. CH Klaassen HA de Valk SA Balajee JF Meis, J Microbiol Methods 2009 77 3 292 296 10.1016/j.mimet.2009.03.004 19303036
31. Interlaboratory reproducibility of a microsatellite-based typing assay for Aspergillus fumigatus through the use of allelic ladders: proof of concept. HA de Valk JF Meis S Bretagne JM Costa BA Lasker SA Balajee AC Pasqualotto MJ Anderson L Alcazar-Fuoli E Mellado CH Klaassen, Clin Microbiol Infect 2009 15 2 180 187 10.1111/j.1469-0691.2008.02656.x 19154486
32. Population structure and diversity of the pathogenic fungus Aspergillus fumigatus isolated from different sources and geographic origins. E Duarte-Escalante G Zuniga ON Ramirez S Cordoba N Refojo R Arenas L Delhaes R Reyes-Montes Mdel, Mem Inst Oswaldo Cruz 2009 104 3 427 433 10.1590/S0074- 02762009000300005 19547867