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Volumn 107, Issue 19, 2010, Pages 8689-8694

Conservation and divergence of methylation patterning in plants and animals

Author keywords

BS Seq; DNA methylation; Epigenetic profiling; Gene body methylation; UHRF1

Indexed keywords

BISULFITE; CYTOSINE; DNA METHYLTRANSFERASE 1; DNA METHYLTRANSFERASE 1 UHRF1; UNCLASSIFIED DRUG;

EID: 77952734605     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1002720107     Document Type: Article
Times cited : (969)

References (39)
  • 1
    • 34249330696 scopus 로고    scopus 로고
    • Epigenetic inheritance in plants
    • Henderson IR, Jacobsen SE (2007) Epigenetic inheritance in plants. Nature 447:418-424.
    • (2007) Nature , vol.447 , pp. 418-424
    • Henderson, I.R.1    Jacobsen, S.E.2
  • 2
    • 17744364327 scopus 로고    scopus 로고
    • Gardening the genome: DNA methylation in Arabidopsis thaliana
    • DOI 10.1038/nrg1601
    • Chan SW, Henderson IR, Jacobsen SE (2005) Gardening the genome: DNA methylation in Arabidopsis thaliana. Nat Rev Genet 6:351-360. (Pubitemid 40577179)
    • (2005) Nature Reviews Genetics , vol.6 , Issue.5 , pp. 351-360
    • Chan, S.W.-L.1    Henderson, I.R.2    Jacobsen, S.E.3
  • 3
    • 15744401773 scopus 로고    scopus 로고
    • Eukaryotic cytosine methyltransferases
    • Goll MG, Bestor TH (2005) Eukaryotic cytosine methyltransferases. Annu Rev Biochem 74:481-514.
    • (2005) Annu Rev Biochem , vol.74 , pp. 481-514
    • Goll, M.G.1    Bestor, T.H.2
  • 4
    • 43749098985 scopus 로고    scopus 로고
    • DNA methylation landscapes: Provocative insights from epigenomics
    • Suzuki MM, Bird A (2008) DNA methylation landscapes: Provocative insights from epigenomics. Nat Rev Genet 9:465-476.
    • (2008) Nat Rev Genet , vol.9 , pp. 465-476
    • Suzuki, M.M.1    Bird, A.2
  • 5
    • 40749109894 scopus 로고    scopus 로고
    • Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning
    • Cokus SJ, et al. (2008) Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning. Nature 452:215-219.
    • (2008) Nature , vol.452 , pp. 215-219
    • Cokus, S.J.1
  • 6
    • 67149119197 scopus 로고    scopus 로고
    • Genome-wide demethylation of Arabidopsis endosperm
    • Hsieh TF, et al. (2009) Genome-wide demethylation of Arabidopsis endosperm. Science 324:1451-1454.
    • (2009) Science , vol.324 , pp. 1451-1454
    • Hsieh, T.F.1
  • 7
    • 42749087226 scopus 로고    scopus 로고
    • Highly integrated single-base resolution maps of the epigenome in Arabidopsis
    • Lister R, et al. (2008) Highly integrated single-base resolution maps of the epigenome in Arabidopsis. Cell 133:523-536.
    • (2008) Cell , vol.133 , pp. 523-536
    • Lister, R.1
  • 8
    • 16344371940 scopus 로고    scopus 로고
    • Evolutionary diversification of DNA methyltransferases in eukaryotic genomes
    • DOI 10.1093/molbev/msi098
    • Ponger L, Li WH (2005) Evolutionary diversification of DNA methyltransferases in eukaryotic genomes. Mol Biol Evol 22:1119-1128. (Pubitemid 40471424)
    • (2005) Molecular Biology and Evolution , vol.22 , Issue.4 , pp. 1119-1128
    • Ponger, L.1    Li, W.-H.2
  • 9
    • 34548629973 scopus 로고    scopus 로고
    • Plant cytosine-5 DNA methyltransferases: Structure, function, and molecular evolution
    • DOI 10.1016/j.ygeno.2007.06.011, PII S0888754307001693
    • Pavlopoulou A, Kossida S (2007) Plant cytosine-5 DNA methyltransferases: Structure, function, and molecular evolution. Genomics 90:530-541. (Pubitemid 47407765)
    • (2007) Genomics , vol.90 , Issue.4 , pp. 530-541
    • Pavlopoulou, A.1    Kossida, S.2
  • 11
    • 12544254467 scopus 로고    scopus 로고
    • DNA methylation profiling identifies CG methylation clusters in Arabidopsis genes
    • Tran RK, et al. (2005) DNA methylation profiling identifies CG methylation clusters in Arabidopsis genes. Curr Biol 15:154-159.
    • (2005) Curr Biol , vol.15 , pp. 154-159
    • Tran, R.K.1
  • 12
    • 0035477135 scopus 로고    scopus 로고
    • Chloroplast DNA methylation and inheritance in Chlamydomonas
    • DOI 10.1101/gad.906701
    • Umen JG, Goodenough UW (2001) Chloroplast DNA methylation and inheritance in Chlamydomonas. Genes Dev 15:2585-2597. (Pubitemid 32937868)
    • (2001) Genes and Development , vol.15 , Issue.19 , pp. 2585-2597
    • Umen, J.G.1    Goodenough, U.W.2
  • 14
    • 8544236211 scopus 로고    scopus 로고
    • Role of a nonselective de Novo DNA methyltransferase in maternal inheritance of chloroplast genes in the green alga, Chlamydomonas reinhardtii
    • DOI 10.1534/genetics.104.030775
    • Nishiyama R, et al. (2004) Role of a nonselective de novo DNA methyltransferase in maternal inheritance of chloroplast genes in the green alga, Chlamydomonas reinhardtii. Genetics 168:809-816. (Pubitemid 39491459)
    • (2004) Genetics , vol.168 , Issue.2 , pp. 809-816
    • Nishiyama, R.1    Wada, Y.2    Mibu, M.3    Yamaguchi, Y.4    Shimogawara, K.5    Sano, H.6
  • 16
    • 34248195006 scopus 로고    scopus 로고
    • CpG methylation is targeted to transcription units in an invertebrate genome
    • DOI 10.1101/gr.6163007
    • Suzuki MM, Kerr AR, De Sousa D, Bird A (2007) CpG methylation is targeted to transcription units in an invertebrate genome. Genome Res 17:625-631. (Pubitemid 46715513)
    • (2007) Genome Research , vol.17 , Issue.5 , pp. 625-631
    • Suzuki, M.M.1    Kerr, A.R.W.2    De Sousa, D.3    Bird, A.4
  • 18
    • 33750460281 scopus 로고    scopus 로고
    • Insights into social insects from the genome of the honeybee Apis mellifera
    • Consortium THGS, Honeybee Genome Sequencing Consortium
    • Consortium THGS, Honeybee Genome Sequencing Consortium (2006) Insights into social insects from the genome of the honeybee Apis mellifera. Nature 443:931-949.
    • (2006) Nature , vol.443 , pp. 931-949
  • 19
    • 33847767127 scopus 로고    scopus 로고
    • DNA methylation with a sting: An active DNA methylation system in the honeybee
    • DOI 10.1002/bies.20548
    • Schaefer M, Lyko F (2007) DNA methylation with a sting: An active DNA methylation system in the honeybee. Bioessays 29:208-211. (Pubitemid 46384159)
    • (2007) BioEssays , vol.29 , Issue.3 , pp. 208-211
    • Schaefer, M.1    Lyko, F.2
  • 21
    • 41349085806 scopus 로고    scopus 로고
    • Nutritional control of reproductive status in honeybees via DNA methylation
    • DOI 10.1126/science.1153069
    • Kucharski R, Maleszka J, Foret S, Maleszka R (2008) Nutritional control of reproductive status in honeybees via DNA methylation. Science 319:1827-1830. (Pubitemid 351451590)
    • (2008) Science , vol.319 , Issue.5871 , pp. 1827-1830
    • Kucharski, R.1    Maleszka, J.2    Foret, S.3    Maleszka, R.4
  • 22
    • 70450217879 scopus 로고    scopus 로고
    • Human DNA methylomes at base resolution show widespread epigenomic differences
    • Lister R, et al. (2009) Human DNA methylomes at base resolution show widespread epigenomic differences. Nature 462:315-322.
    • (2009) Nature , vol.462 , pp. 315-322
    • Lister, R.1
  • 23
    • 69949124307 scopus 로고    scopus 로고
    • Nucleosome positioning as a determinant of exon recognition
    • Tilgner H, et al. (2009) Nucleosome positioning as a determinant of exon recognition. Nat Struct Mol Biol 16:996-1001.
    • (2009) Nat Struct Mol Biol , vol.16 , pp. 996-1001
    • Tilgner, H.1
  • 24
    • 69949132191 scopus 로고    scopus 로고
    • Chromatin organization marks exon-intron structure
    • Schwartz S, Meshorer E, Ast G (2009) Chromatin organization marks exon-intron structure. Nat Struct Mol Biol 16:990-995.
    • (2009) Nat Struct Mol Biol , vol.16 , pp. 990-995
    • Schwartz, S.1    Meshorer, E.2    Ast, G.3
  • 25
    • 70349333201 scopus 로고    scopus 로고
    • Nucleosomes are well positioned in exons and carry characteristic histone modifications
    • Andersson R, Enroth S, Rada-Iglesias A, Wadelius C, Komorowski J (2009) Nucleosomes are well positioned in exons and carry characteristic histone modifications. Genome Res 19:1732-1741.
    • (2009) Genome Res , vol.19 , pp. 1732-1741
    • Andersson, R.1    Enroth, S.2    Rada-Iglesias, A.3    Wadelius, C.4    Komorowski, J.5
  • 26
    • 70249141961 scopus 로고    scopus 로고
    • Loss of Dnmt1 catalytic activity reveals multiple roles for DNA methylation during pancreas development and regeneration
    • Anderson RM, et al. (2009) Loss of Dnmt1 catalytic activity reveals multiple roles for DNA methylation during pancreas development and regeneration. Dev Biol 334:213-223.
    • (2009) Dev Biol , vol.334 , pp. 213-223
    • Anderson, R.M.1
  • 27
  • 29
    • 50849106398 scopus 로고    scopus 로고
    • Three SRA-domain methylcytosine-binding proteins cooperate to maintain global CpG methylation and epigenetic silencing in Arabidopsis
    • Woo HR, Dittmer TA, Richards EJ (2008) Three SRA-domain methylcytosine-binding proteins cooperate to maintain global CpG methylation and epigenetic silencing in Arabidopsis. PLoS Genet 4:e1000156.
    • (2008) PLoS Genet , vol.4
    • Woo, H.R.1    Dittmer, T.A.2    Richards, E.J.3
  • 30
    • 33846931283 scopus 로고    scopus 로고
    • The SRA methyl-cytosine-binding domain links DNA and histone methylation
    • Johnson LM, et al. (2007) The SRA methyl-cytosine-binding domain links DNA and histone methylation. Curr Biol 17:379-384.
    • (2007) Curr Biol , vol.17 , pp. 379-384
    • Johnson, L.M.1
  • 31
    • 53649089723 scopus 로고    scopus 로고
    • The SRA domain of UHRF1 flips 5-methylcytosine out of the DNA helix
    • Hashimoto H, et al. (2008) The SRA domain of UHRF1 flips 5-methylcytosine out of the DNA helix. Nature 455:826-829.
    • (2008) Nature , vol.455 , pp. 826-829
    • Hashimoto, H.1
  • 32
    • 33846848005 scopus 로고    scopus 로고
    • Liver growth in the embryo and during liver regeneration in zebrafish requires the cell cycle regulator, uhrf1
    • Sadler KC, Krahn KN, Gaur NA, Ukomadu C (2007) Liver growth in the embryo and during liver regeneration in zebrafish requires the cell cycle regulator, uhrf1. Proc Natl Acad Sci USA 104:1570-1575.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 1570-1575
    • Sadler, K.C.1    Krahn, K.N.2    Gaur, N.A.3    Ukomadu, C.4
  • 34
    • 0037072831 scopus 로고    scopus 로고
    • Targeted disruption of Np95 gene renders murine embryonic stem cells hypersensitive to DNA damaging agents and DNA replication blocks
    • Muto M, et al. (2002) Targeted disruption of Np95 gene renders murine embryonic stem cells hypersensitive to DNA damaging agents and DNA replication blocks. J Biol Chem 277:34549-34555.
    • (2002) J Biol Chem , vol.277 , pp. 34549-34555
    • Muto, M.1
  • 35
    • 0033555906 scopus 로고    scopus 로고
    • Tandem repeats finder: A program to analyze DNA sequences
    • Benson G (1999) Tandem repeats finder: A program to analyze DNA sequences. Nucleic Acids Res 27:573-580.
    • (1999) Nucleic Acids Res , vol.27 , pp. 573-580
    • Benson, G.1
  • 36
    • 6344289639 scopus 로고    scopus 로고
    • Inverted repeat structure of the human genome: The X-chromosome contains a preponderance of large, highly homologous inverted repeated that contain testes genes
    • Warburton PE, Giordano J, Cheung F, Gelfand Y, Benson G (2004) Invertedrepeat structure of the human genome: The X-chromosome contains a preponderance of large, highly homologous inverted repeats that contain testes genes. Genome Res 14:1861-1869. (Pubitemid 39386499)
    • (2004) Genome Research , vol.14 , Issue.10 A , pp. 1861-1869
    • Warburton, P.E.1    Giordano, J.2    Cheung, F.3    Gelfand, Y.4    Benson, G.5
  • 37
    • 0036673472 scopus 로고    scopus 로고
    • Automated de novo identification of repeat sequence families in sequenced genomes
    • DOI 10.1101/gr.88502
    • Bao Z, Eddy SR (2002) Automated de novo identification of repeat sequence families in sequenced genomes. Genome Res 12:1269-1276. (Pubitemid 41264428)
    • (2002) Genome Research , vol.12 , Issue.8 , pp. 1269-1276
    • Bao, Z.1    Eddy, S.R.2
  • 38
    • 0032680362 scopus 로고    scopus 로고
    • A fast algorithm for the minimum covariance determinant estimator
    • Rousseeuw PJ, van Driessen K (1999) A fast algorithm for the minimum covariance determinant estimator. Technometrics 41:212-223.
    • (1999) Technometrics , vol.41 , pp. 212-223
    • Rousseeuw, P.J.1    Van Driessen, K.2
  • 39
    • 77952355762 scopus 로고    scopus 로고
    • Genome-wide evolutionary analysis of eukaryotic DNA methylation
    • 10.1126/science.1186366
    • Zemach A, McDaniel IE, Silva P, Zilberman D (2010) Genome-wide evolutionary analysis of eukaryotic DNA methylation. Science, 10.1126/science.1186366.
    • (2010) Science
    • Zemach, A.1    McDaniel, I.E.2    Silva, P.3    Zilberman, D.4


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