메뉴 건너뛰기




Volumn 8, Issue 11, 2010, Pages

The DNA methylome of human peripheral blood mononuclear cells

(37)  Li, Yingrui a   Zhu, Jingde b   Tian, Geng a,c,d   Li, Ning a   Li, Qibin a   Ye, Mingzhi a   Zheng, Hancheng a   Yu, Jian b   Wu, Honglong a   Sun, Jihua a   Zhang, Hongyu b   Chen, Quan a   Luo, Ruibang a,e   Chen, Minfeng a   He, Yinghua b   Jin, Xin a,e   Zhang, Qinghui a   Yu, Chang a   Zhou, Guangyu a   Sun, Jinfeng b   more..


Author keywords

[No Author keywords available]

Indexed keywords

BISULFITE; CPG OLIGODEOXYNUCLEOTIDE; CYTOSINE; UNTRANSLATED RNA;

EID: 78649969065     PISSN: 15449173     EISSN: 15457885     Source Type: Journal    
DOI: 10.1371/journal.pbio.1000533     Document Type: Article
Times cited : (280)

References (32)
  • 2
    • 70450217879 scopus 로고    scopus 로고
    • Human DNA methylomes at base resolution show widespread epigenomic differences
    • Lister R, Pelizzola M, Dowen RH, Hawkins RD, Hon G, et al. (2009) Human DNA methylomes at base resolution show widespread epigenomic differences. Nature.
    • (2009) Nature
    • Lister, R.1    Pelizzola, M.2    Dowen, R.H.3    Hawkins, R.D.4    Hon, G.5
  • 3
    • 34249275353 scopus 로고    scopus 로고
    • Phenotypic plasticity and the epigenetics of human disease
    • Feinberg AP (2007) Phenotypic plasticity and the epigenetics of human disease. Nature 447: 433-440.
    • (2007) Nature , vol.447 , pp. 433-440
    • Feinberg, A.P.1
  • 4
    • 40749109894 scopus 로고    scopus 로고
    • Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning
    • Cokus SJ, Feng S, Zhang X, Chen Z, Merriman B, et al. (2008) Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning. Nature 452: 215-219.
    • (2008) Nature , vol.452 , pp. 215-219
    • Cokus, S.J.1    Feng, S.2    Zhang, X.3    Chen, Z.4    Merriman, B.5
  • 5
    • 42749087226 scopus 로고    scopus 로고
    • Highly integrated single-base resolution maps of the epigenome in Arabidopsis
    • Lister R, O'Malley RC, Tonti-Filippini J, Gregory BD, Berry CC, et al. (2008) Highly integrated single-base resolution maps of the epigenome in Arabidopsis. Cell 133: 523-536.
    • (2008) Cell , vol.133 , pp. 523-536
    • Lister, R.1    O'Malley, R.C.2    Tonti-Filippini, J.3    Gregory, B.D.4    Berry, C.C.5
  • 6
    • 49649125042 scopus 로고    scopus 로고
    • Genome-scale DNA methylation maps of pluripotent and differentiated cells
    • Meissner A, Mikkelsen TS, Gu H, Wernig M, Hanna J, et al. (2008) Genome-scale DNA methylation maps of pluripotent and differentiated cells. Nature 454: 766-770.
    • (2008) Nature , vol.454 , pp. 766-770
    • Meissner, A.1    Mikkelsen, T.S.2    Gu, H.3    Wernig, M.4    Hanna, J.5
  • 8
    • 46949098742 scopus 로고    scopus 로고
    • A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis
    • Down TA, Rakyan VK, Turner DJ, Flicek P, Li H, et al. (2008) A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis. Nat Biotechnol 26: 779-785.
    • (2008) Nat Biotechnol , vol.26 , pp. 779-785
    • Down, T.A.1    Rakyan, V.K.2    Turner, D.J.3    Flicek, P.4    Li, H.5
  • 9
    • 77649267695 scopus 로고    scopus 로고
    • Dynamic changes in the human methylome during differentiation
    • Laurent L, Wong E, Li G, Huynh T, Tsirigos A, et al. (2010) Dynamic changes in the human methylome during differentiation. Genome Res 20: 320-331.
    • (2010) Genome Res , vol.20 , pp. 320-331
    • Laurent, L.1    Wong, E.2    Li, G.3    Huynh, T.4    Tsirigos, A.5
  • 10
    • 77249137168 scopus 로고    scopus 로고
    • Principles and challenges of genome-wide DNA methylation analysis
    • Laird PW (2010) Principles and challenges of genome-wide DNA methylation analysis. Nat Rev Genet 11: 191-203.
    • (2010) Nat Rev Genet , vol.11 , pp. 191-203
    • Laird, P.W.1
  • 11
    • 55549097849 scopus 로고    scopus 로고
    • The diploid genome sequence of an Asian individual
    • Wang J, Wang W, Li R, Li Y, Tian G, et al. (2008) The diploid genome sequence of an Asian individual. Nature 456: 60-65.
    • (2008) Nature , vol.456 , pp. 60-65
    • Wang, J.1    Wang, W.2    Li, R.3    Li, Y.4    Tian, G.5
  • 12
    • 0026546877 scopus 로고
    • A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands
    • Frommer M, McDonald LE, Millar DS, Collis CM, Watt F, et al. (1992) A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands. Proc Natl Acad Sci U S A 89: 1827-1831.
    • (1992) Proc Natl Acad Sci U S A , vol.89 , pp. 1827-1831
    • Frommer, M.1    McDonald, L.E.2    Millar, D.S.3    Collis, C.M.4    Watt, F.5
  • 13
    • 43749098985 scopus 로고    scopus 로고
    • DNA methylation landscapes: Provocative insights from epigenomics
    • Suzuki MM, Bird A (2008) DNA methylation landscapes: provocative insights from epigenomics. Nat Rev Genet 9: 465-476.
    • (2008) Nat Rev Genet , vol.9 , pp. 465-476
    • Suzuki, M.M.1    Bird, A.2
  • 15
    • 0031662164 scopus 로고    scopus 로고
    • Transcription of IAP endogenous retroviruses is constrained by cytosine methylation
    • Walsh CP, Chaillet JR, Bestor TH (1998) Transcription of IAP endogenous retroviruses is constrained by cytosine methylation. Nat Genet 20: 116-117.
    • (1998) Nat Genet , vol.20 , pp. 116-117
    • Walsh, C.P.1    Chaillet, J.R.2    Bestor, T.H.3
  • 17
    • 70649095120 scopus 로고    scopus 로고
    • Differential methylation of tissue- and cancer-specific CpG island shores distinguishes human induced pluripotent stem cells, embryonic stem cells and fibroblasts
    • Doi A, Park IH, Wen B, Murakami P, Aryee MJ, et al. (2009) Differential methylation of tissue- and cancer-specific CpG island shores distinguishes human induced pluripotent stem cells, embryonic stem cells and fibroblasts. Nat Genet 41: 1350-1353.
    • (2009) Nat Genet , vol.41 , pp. 1350-1353
    • Doi, A.1    Park, I.H.2    Wen, B.3    Murakami, P.4    Aryee, M.J.5
  • 18
    • 35348983887 scopus 로고    scopus 로고
    • A second generation human haplotype map of over 3.1 million SNPs
    • Frazer KA, Ballinger DG, Cox DR, Hinds DA, Stuve LL, et al. (2007) A second generation human haplotype map of over 3.1 million SNPs. Nature 449: 851-861.
    • (2007) Nature , vol.449 , pp. 851-861
    • Frazer, K.A.1    Ballinger, D.G.2    Cox, D.R.3    Hinds, D.A.4    Stuve, L.L.5
  • 19
    • 33846064113 scopus 로고    scopus 로고
    • NCBI GEO: Mining tens of millions of expression profiles-database and tools update
    • Barrett T, Troup DB, Wilhite SE, Ledoux P, Rudnev D, et al. (2007) NCBI GEO: mining tens of millions of expression profiles-database and tools update. Nucleic Acids Res 35: D760-D765.
    • (2007) Nucleic Acids Res , vol.35
    • Barrett, T.1    Troup, D.B.2    Wilhite, S.E.3    Ledoux, P.4    Rudnev, D.5
  • 20
    • 0035234557 scopus 로고    scopus 로고
    • Genomic imprinting: Parental influence on the genome
    • Reik W, Walter J (2001) Genomic imprinting: parental influence on the genome. Nat Rev Genet 2: 21-32.
    • (2001) Nat Rev Genet , vol.2 , pp. 21-32
    • Reik, W.1    Walter, J.2
  • 21
    • 77953432671 scopus 로고    scopus 로고
    • Advances in the identification and analysis of allele-specific expression
    • Bell CG, Beck S (2009) Advances in the identification and analysis of allele-specific expression. Genome Med 1: 56.
    • (2009) Genome Med , vol.1 , pp. 56
    • Bell, C.G.1    Beck, S.2
  • 22
    • 34547691516 scopus 로고    scopus 로고
    • Fank1 is a testis-specific gene encoding a nuclear protein exclusively expressed during the transition from the meiotic to the haploid phase of spermatogenesis
    • Zheng Z, Zheng H, Yan W (2007) Fank1 is a testis-specific gene encoding a nuclear protein exclusively expressed during the transition from the meiotic to the haploid phase of spermatogenesis. Gene Expr Patterns 7: 777-783.
    • (2007) Gene Expr Patterns , vol.7 , pp. 777-783
    • Zheng, Z.1    Zheng, H.2    Yan, W.3
  • 24
    • 46249117780 scopus 로고    scopus 로고
    • Genomic surveys by methylation-sensitive SNP analysis identify sequence-dependent allele-specific DNA methylation
    • Kerkel K, Spadola A, Yuan E, Kosek J, Jiang L, et al. (2008) Genomic surveys by methylation-sensitive SNP analysis identify sequence-dependent allele-specific DNA methylation. Nat Genet 40: 904-908.
    • (2008) Nat Genet , vol.40 , pp. 904-908
    • Kerkel, K.1    Spadola, A.2    Yuan, E.3    Kosek, J.4    Jiang, L.5
  • 25
    • 40149090710 scopus 로고    scopus 로고
    • Differential allelic expression in the human genome: A robust approach to identify genetic and epigenetic cis-acting mechanisms regulating gene expression
    • 10.1371/journal.pgen.1000006
    • Serre D, Gurd S, Ge B, Sladek R, Sinnett D, et al. (2008) Differential allelic expression in the human genome: a robust approach to identify genetic and epigenetic cis-acting mechanisms regulating gene expression. PLoS Genet 4: e1000006. doi:10.1371/journal.pgen.1000006.
    • (2008) PLoS Genet , pp. 4
    • Serre, D.1    Gurd, S.2    Ge, B.3    Sladek, R.4    Sinnett, D.5
  • 26
    • 40349085705 scopus 로고    scopus 로고
    • Noncoding human Y RNAs are overexpressed in tumours and required for cell proliferation
    • Christov CP, Trivier E, Krude T (2008) Noncoding human Y RNAs are overexpressed in tumours and required for cell proliferation. Br J Cancer 98: 981-988.
    • (2008) Br J Cancer , vol.98 , pp. 981-988
    • Christov, C.P.1    Trivier, E.2    Krude, T.3
  • 30
    • 49649122472 scopus 로고    scopus 로고
    • Moving AHEAD With An International Human Epigenome Project
    • (2008) Moving AHEAD with an international human epigenome project. Nature 454: 711-715.
    • (2008) Nature , vol.454 , pp. 711-715
  • 31
    • 36048997460 scopus 로고    scopus 로고
    • Does urea promote the bisulfite-mediated deamination of cytosine in DNA?Investigation aiming at speeding-up the procedure for DNA methylation analysis
    • Hayatsu H, Tsuji K, Negishi K (2006) Does urea promote the bisulfite-mediated deamination of cytosine in DNA?Investigation aiming at speeding-up the procedure for DNA methylation analysis. Nucleic Acids Symp Ser (Oxf). pp 69-70.
    • (2006) Nucleic Acids Symp Ser (Oxf) , pp. 69-70
    • Hayatsu, H.1    Tsuji, K.2    Negishi, K.3
  • 32
    • 40049104732 scopus 로고    scopus 로고
    • SOAP: Short oligonucleotide alignment program
    • Li R, Li Y, Kristiansen K, Wang J (2008) SOAP: short oligonucleotide alignment program. Bioinformatics 24: 713-714.
    • (2008) Bioinformatics , vol.24 , pp. 713-714
    • Li, R.1    Li, Y.2    Kristiansen, K.3    Wang, J.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.