메뉴 건너뛰기




Volumn 12, Issue 4, 2011, Pages 283-293

Enhancer function: New insights into the regulation of tissue-specific gene expression

Author keywords

[No Author keywords available]

Indexed keywords

COHESIN; HISTONE; RNA; RNA POLYMERASE II; TRANSCRIPTION FACTOR;

EID: 79952901680     PISSN: 14710056     EISSN: 14710064     Source Type: Journal    
DOI: 10.1038/nrg2957     Document Type: Review
Times cited : (684)

References (97)
  • 1
    • 77956495708 scopus 로고    scopus 로고
    • Transcriptional enhancers in animal development and evolution
    • Levine, M. Transcriptional enhancers in animal development and evolution. Curr. Biol. 20, R754-R763 (2010).
    • (2010) Curr. Biol. , vol.20
    • Levine, M.1
  • 3
    • 0019811465 scopus 로고
    • Expression of a β-globin gene is enhanced by remote SV40 DNA sequences
    • Banerji, J., Rusconi, S. & Schaffner, W. Expression of a beta-globin gene is enhanced by remote SV40 DNA sequences. Cell 27, 299-308 (1981). (Pubitemid 12200499)
    • (1981) Cell , vol.27 , Issue.2 , pp. 299-308
    • Banerji, J.1    Rusconi, S.2    Schaffner, W.3
  • 4
    • 0025335394 scopus 로고
    • Tissue-specific transcriptional enhancers may act in trans on the gene located in the homologous chromosome: The molecular basis of transvection in Drosophila
    • Geyer, P. K., Green, M. M. & Corces, V. G. Tissue-specific transcriptional enhancers may act in trans on the gene located in the homologous chromosome: the molecular basis of transvection in Drosophila. EMBO J. 9, 2247-2256 (1990).
    • (1990) EMBO J. , vol.9 , pp. 2247-2256
    • Geyer, P.K.1    Green, M.M.2    Corces, V.G.3
  • 5
    • 33746228114 scopus 로고    scopus 로고
    • Interchromosomal Interactions and Olfactory Receptor Choice
    • DOI 10.1016/j.cell.2006.06.035, PII S0092867406008555
    • Lomvardas, S. et al. Interchromosomal interactions and olfactory receptor choice. Cell 126, 403-413 (2006). (Pubitemid 44092961)
    • (2006) Cell , vol.126 , Issue.2 , pp. 403-413
    • Lomvardas, S.1    Barnea, G.2    Pisapia, D.J.3    Mendelsohn, M.4    Kirkland, J.5    Axel, R.6
  • 6
    • 45449099933 scopus 로고    scopus 로고
    • Advances in bacterial promoter recognition and its control by factors that do not bind DNA
    • DOI 10.1038/nrmicro1912, PII NRMICRO1912
    • Haugen, S. P., Ross, W. & Gourse, R. L. Advances in bacterial promoter recognition and its control by factors that do not bind DNA. Nature Rev. Microbiol. 6, 507-519 (2008). (Pubitemid 351850975)
    • (2008) Nature Reviews Microbiology , vol.6 , Issue.7 , pp. 507-519
    • Haugen, S.P.1    Ross, W.2    Gourse, R.L.3
  • 7
    • 77958111633 scopus 로고    scopus 로고
    • The metazoan Mediator co-activator complex as an integrative hub for transcriptional regulation
    • Malik, S. & Roeder, R. G. The metazoan Mediator co-activator complex as an integrative hub for transcriptional regulation. Nature Rev. Genet. 11, 761-772 (2010).
    • (2010) Nature Rev. Genet. , vol.11 , pp. 761-772
    • Malik, S.1    Roeder, R.G.2
  • 8
    • 77952242784 scopus 로고    scopus 로고
    • The transcriptional interactome: Gene expression in 3D
    • Schoenfelder, S., Clay, I. & Fraser, P. The transcriptional interactome: gene expression in 3D. Curr. Opin. Genet. Dev. 20, 127-133 (2010).
    • (2010) Curr. Opin. Genet. Dev. , vol.20 , pp. 127-133
    • Schoenfelder, S.1    Clay, I.2    Fraser, P.3
  • 9
    • 67650725820 scopus 로고    scopus 로고
    • The biology of chromatin remodeling complexes
    • Clapier, C. R. & Cairns, B. R. The biology of chromatin remodeling complexes. Annu. Rev. Biochem. 78, 273-304 (2009).
    • (2009) Annu. Rev. Biochem. , vol.78 , pp. 273-304
    • Clapier, C.R.1    Cairns, B.R.2
  • 11
    • 58049191558 scopus 로고    scopus 로고
    • Chromatin signatures in multipotent human hematopoietic stem cells indicate the fate of bivalent genes during differentiation
    • Cui, K. R. et al. chromatin signatures in multipotent human hematopoietic stem cells indicate the fate of bivalent genes during differentiation. Cell Stem Cell 4, 80-93 (2009).
    • (2009) Cell Stem Cell , vol.4 , pp. 80-93
    • Cui, K.R.1
  • 12
    • 65549104157 scopus 로고    scopus 로고
    • Histone modifications at human enhancers reflect global cell-type-specific gene expression
    • Heintzman, N. D. et al. Histone modifications at human enhancers reflect global cell-type-specific gene expression. Nature 459, 108-112 (2009).
    • (2009) Nature , vol.459 , pp. 108-112
    • Heintzman, N.D.1
  • 13
    • 77957243921 scopus 로고    scopus 로고
    • Long noncoding RNAs with enhancer-like function in human cells
    • Orom, U. A. et al. Long noncoding RNAs with enhancer-like function in human cells. Cell 143, 46-58 (2010).
    • (2010) Cell , vol.143 , pp. 46-58
    • Orom, U.A.1
  • 14
    • 70149112313 scopus 로고    scopus 로고
    • Histone crosstalk between H3S10ph and H4K16ac generates a histone code that mediates transcription elongation
    • Zippo, A. et al. Histone crosstalk between H3S10ph and H4K16ac generates a histone code that mediates transcription elongation. Cell 138, 1122-1136 (2009).
    • (2009) Cell , vol.138 , pp. 1122-1136
    • Zippo, A.1
  • 15
    • 36448949026 scopus 로고    scopus 로고
    • Multivalent engagement of chromatin modifications by linked binding modules
    • DOI 10.1038/nrm2298, PII NRM2298
    • Ruthenburg, A. J., Li, H., Patel, D. J. & Allis, C. D. Multivalent engagement of chromatin modifications by linked binding modules. Nature Rev. Mol. Cell Biol. 8, 983-994 (2007). (Pubitemid 350174643)
    • (2007) Nature Reviews Molecular Cell Biology , vol.8 , Issue.12 , pp. 983-994
    • Ruthenburg, A.J.1    Li, H.2    Patel, D.J.3    David Allis, C.4
  • 16
    • 37249012276 scopus 로고    scopus 로고
    • Nucleosome destabilization in the epigenetic regulation of gene expression
    • DOI 10.1038/nrg2206, PII NRG2206
    • Henikoff, S. Nucleosome destabilization in the epigenetic regulation of gene expression. Nature Rev. Genet. 9, 15-26 (2008). (Pubitemid 350277297)
    • (2008) Nature Reviews Genetics , vol.9 , Issue.1 , pp. 15-26
    • Henikoff, S.1
  • 17
    • 33947098453 scopus 로고    scopus 로고
    • Histone replacement marks the boundaries of cis-regulatory domains
    • DOI 10.1126/science.1134004
    • Mito, Y., Henikoff, J. G. & Henikoff, S. Histone replacement marks the boundaries of cis-regulatory domains. Science 315, 1408-1411 (2007). (Pubitemid 46399549)
    • (2007) Science , vol.315 , Issue.5817 , pp. 1408-1411
    • Mito, Y.1    Henikoff, J.G.2    Henikoff, S.3
  • 21
    • 39749145198 scopus 로고    scopus 로고
    • Dynamic Regulation of Nucleosome Positioning in the Human Genome
    • DOI 10.1016/j.cell.2008.02.022, PII S0092867408002705
    • Schones, D. E. et al. Dynamic regulation of nucleosome positioning in the human genome. Cell 132, 887-898 (2008). (Pubitemid 351312809)
    • (2008) Cell , vol.132 , Issue.5 , pp. 887-898
    • Schones, D.E.1    Cui, K.2    Cuddapah, S.3    Roh, T.-Y.4    Barski, A.5    Wang, Z.6    Wei, G.7    Zhao, K.8
  • 22
    • 34047111213 scopus 로고    scopus 로고
    • Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome
    • DOI 10.1038/nature05632, PII NATURE05632
    • Albert, I. et al. Translational and rotational settings of H2A.Z. nucleosomes across the Saccharomyces cerevisiae genome. Nature 446, 572-576 (2007). (Pubitemid 46514724)
    • (2007) Nature , vol.446 , Issue.7135 , pp. 572-576
    • Albert, I.1    Mavrich, T.N.2    Tomsho, L.P.3    Qi, J.4    Zanton, S.J.5    Schuster, S.C.6    Pugh, B.F.7
  • 23
    • 61849170193 scopus 로고    scopus 로고
    • Genome-wide profiling of salt fractions maps physical properties of chromatin
    • Henikoff, S., Henikoff, J. G., Sakai, A., Loeb, G. B. & Ahmad, K. Genome-wide profiling of salt fractions maps physical properties of chromatin. Genome Res. 19, 460-469 (2009).
    • (2009) Genome Res. , vol.19 , pp. 460-469
    • Henikoff, S.1    Henikoff, J.G.2    Sakai, A.3    Loeb, G.B.4    Ahmad, K.5
  • 24
    • 34250745886 scopus 로고    scopus 로고
    • Nucleosome stability mediated by histone variants H3.3 and H2A.Z
    • DOI 10.1101/gad.1547707
    • Jin, C. Y. & Felsenfeld, G. Nucleosome stability mediated by histone variants H3.3 and H2A. Z. Genes Dev. 21, 1519-1529 (2007). (Pubitemid 46955724)
    • (2007) Genes and Development , vol.21 , Issue.12 , pp. 1519-1529
    • Jin, C.1    Felsenfeld, G.2
  • 25
    • 46249112085 scopus 로고    scopus 로고
    • Combinatorial patterns of histone acetylations and methylations in the human genome
    • Wang, Z. B. et al. Combinatorial patterns of histone acetylations and methylations in the human genome. Nature Genet. 40, 897-903 (2008).
    • (2008) Nature Genet. , vol.40 , pp. 897-903
    • Wang, Z.B.1
  • 26
    • 68149150830 scopus 로고    scopus 로고
    • H3.3/H2A.Z. double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions
    • Jin, C. Y. et al. H3.3/H2A.Z. double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions. Nature Genet. 41, 941-945 (2009).
    • (2009) Nature Genet. , vol.41 , pp. 941-945
    • Jin, C.Y.1
  • 27
    • 77950262538 scopus 로고    scopus 로고
    • Nucleosome dynamics define transcriptional enhancers
    • He, H. S. H. S. et al. Nucleosome dynamics define transcriptional enhancers. Nature Genet. 42, 343-347 (2010).
    • (2010) Nature Genet. , vol.42 , pp. 343-347
    • He, H.S.H.S.1
  • 28
    • 77953763449 scopus 로고    scopus 로고
    • A global network of transcription factors, involving E2A, EBF1 and Foxo1, that orchestrates B cell fate
    • Lin, Y. C. et al. A global network of transcription factors, involving E2A, EBF1 and Foxo1, that orchestrates B cell fate. Nature Immunol. 11, 635-643 (2010).
    • (2010) Nature Immunol. , vol.11 , pp. 635-643
    • Lin, Y.C.1
  • 29
    • 77449109789 scopus 로고    scopus 로고
    • Target gene context influences the transcriptional requirement for the KAT3 family of CBP and p300 histone acetyltransferases
    • Bedford, D. C., Kasper, L. H., Fukuyama, T. & Brindle, P. K. Target gene context influences the transcriptional requirement for the KAT3 family of CBP and p300 histone acetyltransferases. Epigenetics 5, 9-15 (2010).
    • (2010) Epigenetics , vol.5 , pp. 9-15
    • Bedford, D.C.1    Kasper, L.H.2    Fukuyama, T.3    Brindle, P.K.4
  • 31
    • 60149091656 scopus 로고    scopus 로고
    • ChIP-seq accurately predicts tissue-specific activity of enhancers
    • Visel, A. et al. ChIP-seq accurately predicts tissue-specific activity of enhancers. Nature 457, 854-858 (2009).
    • (2009) Nature , vol.457 , pp. 854-858
    • Visel, A.1
  • 32
    • 77956641239 scopus 로고    scopus 로고
    • ChIP-Seq identification of weakly conserved heart enhancers
    • Blow, M. J. et al. ChIP-Seq identification of weakly conserved heart enhancers. Nature Genet. 42, 806-810 (2010).
    • (2010) Nature Genet. , vol.42 , pp. 806-810
    • Blow, M.J.1
  • 33
  • 35
    • 14644406272 scopus 로고    scopus 로고
    • Active chromatin domains are defined by acetylation islands revealed by genome-wide mapping
    • DOI 10.1101/gad.1272505
    • Roh, T. Y., Cuddapah, S. & Zhao, K. Active chromatin domains are defined by acetylation islands revealed by genome-wide mapping. Genes Dev. 19, 542-552 (2005). (Pubitemid 40314987)
    • (2005) Genes and Development , vol.19 , Issue.5 , pp. 542-552
    • Roh, T.-Y.1    Cuddapah, S.2    Zhao, K.3
  • 36
    • 33846006550 scopus 로고    scopus 로고
    • Genome-wide prediction of conserved and nonconserved enhancers by histone acetylation patterns
    • DOI 10.1101/gr.5767907
    • Roh, T. Y., Wei, G., Farrell, C. M. & Zhao, K. Genome-wide prediction of conserved and nonconserved enhancers by histone acetylation patterns. Genome Res. 17, 74-81 (2007). (Pubitemid 46041668)
    • (2007) Genome Research , vol.17 , Issue.1 , pp. 74-81
    • Roh, T.-Y.1    Wei, G.2    Farrell, C.M.3    Zhao, K.4
  • 37
    • 0348184963 scopus 로고    scopus 로고
    • ATP-Driven Exchange of Histone H2AZ Variant Catalyzed by SWR1 Chromatin Remodeling Complex
    • DOI 10.1126/science.1090701
    • Mizuguchi, G. et al. ATP-Driven exchange of histone H2AZ variant catalyzed by SWR1 chromatin remodeling complex. Science 303, 343-348 (2004). (Pubitemid 38095768)
    • (2004) Science , vol.303 , Issue.5656 , pp. 343-348
    • Mizuguchi, G.1    Shen, X.2    Landry, J.3    Wu, W.-H.4    Sen, S.5    Wu, C.6
  • 38
    • 33846019277 scopus 로고    scopus 로고
    • Methylation of Lysine 4 on Histone H3: Intricacy of Writing and Reading a Single Epigenetic Mark
    • DOI 10.1016/j.molcel.2006.12.014, PII S1097276506008720
    • Ruthenburg, A. J., Allis, C. D. & Wysocka, J. Methylation of lysine 4 on histone H3: intricacy of writing and reading a single epigenetic mark. Molecular Cell 25, 15-30 (2007). (Pubitemid 46049068)
    • (2007) Molecular Cell , vol.25 , Issue.1 , pp. 15-30
    • Ruthenburg, A.J.1    Allis, C.D.2    Wysocka, J.3
  • 39
    • 77950866717 scopus 로고    scopus 로고
    • Chromatin signature of embryonic pluripotency is established during genome activation
    • Vastenhouw, N. L. et al. Chromatin signature of embryonic pluripotency is established during genome activation. Nature 464, 922-926 (2010).
    • (2010) Nature , vol.464 , pp. 922-926
    • Vastenhouw, N.L.1
  • 40
    • 77957672080 scopus 로고    scopus 로고
    • Epigenetic priming of a pre-B cell-specific enhancer through binding of Sox2 and Foxd3 at the ESC stage
    • Liber, D. et al. Epigenetic priming of a pre-B cell-specific enhancer through binding of Sox2 and Foxd3 at the ESC stage. Cell Stem Cell 7, 114-126 (2010).
    • (2010) Cell Stem Cell , vol.7 , pp. 114-126
    • Liber, D.1
  • 41
    • 77953955724 scopus 로고    scopus 로고
    • The death-associated protein DAXX is a novel histone chaperone involved in the replication-independent deposition of H3
    • Drane, P., Ouararhni, K., Depaux, A., Shuaib, M. & Hamiche, A. The death-associated protein DAXX is a novel histone chaperone involved in the replication-independent deposition of H3. Genes Dev. 24, 1253-1265 (2010).
    • (2010) Genes Dev. , vol.24 , pp. 1253-1265
    • Drane, P.1    Ouararhni, K.2    Depaux, A.3    Shuaib, M.4    Hamiche, A.5
  • 42
    • 77649099092 scopus 로고    scopus 로고
    • Distinct factors control histone variant H3.3 localization at specific genomic regions
    • Goldberg, A. D. et al. Distinct factors control histone variant H3.3 localization at specific genomic regions. Cell 140, 678-691 (2010).
    • (2010) Cell , vol.140 , pp. 678-691
    • Goldberg, A.D.1
  • 43
    • 77956282773 scopus 로고    scopus 로고
    • Daxx is an H3.3-specific histone chaperone and cooperates with ATRX in replication-independent chromatin assembly at telomeres
    • Lewis, P. W., Elsaesser, S. J., Noh, K. M., Stadler, S. C. & Allis, C. D. Daxx is an H3.3-specific histone chaperone and cooperates with ATRX in replication-independent chromatin assembly at telomeres. Proc. Natl Acad. Sci. USA. 107, 14075-14080 (2010).
    • (2010) Proc. Natl Acad. Sci. USA. , vol.107 , pp. 14075-14080
    • Lewis, P.W.1    Elsaesser, S.J.2    Noh, K.M.3    Stadler, S.C.4    Allis, C.D.5
  • 44
    • 65249164132 scopus 로고    scopus 로고
    • Mechanisms that Specify Promoter Nucleosome Location and Identity
    • Hartley, P. D. & Madhani, H. D. Mechanisms that Specify Promoter Nucleosome Location and Identity. Cell 137, 445-458 (2009).
    • (2009) Cell , vol.137 , pp. 445-458
    • Hartley, P.D.1    Madhani, H.D.2
  • 45
    • 79951516056 scopus 로고    scopus 로고
    • A unique chromatin signature uncovers early developmental enhancers in humans
    • Rada-Iglesias, A. et al. A unique chromatin signature uncovers early developmental enhancers in humans. Nature 470, 279-283 (2011).
    • (2011) Nature , vol.470 , pp. 279-283
    • Rada-Iglesias, A.1
  • 46
    • 78650758676 scopus 로고    scopus 로고
    • Histone H3K27ac separates active from poised enhancers and predicts developmental state
    • Creyghton, M. P. et al. Histone H3K27ac separates active from poised enhancers and predicts developmental state. Proc. Natl Acad. Sci. USA 107, 21931-21936 (2010).
    • (2010) Proc. Natl Acad. Sci. USA , vol.107 , pp. 21931-21936
    • Creyghton, M.P.1
  • 48
    • 11144339384 scopus 로고    scopus 로고
    • Long-range control of gene expression: Emerging mechanisms and disruption in disease
    • DOI 10.1086/426833
    • Kleinjan, D. A. & van Heyningen, V. Long-range control of gene expression: emerging mechanisms and disruption in disease. Am. J. Hum. Genet. 76, 8-32 (2005). (Pubitemid 40023762)
    • (2005) American Journal of Human Genetics , vol.76 , Issue.1 , pp. 8-32
    • Kleinjan, D.A.1    Van Heyningen, V.2
  • 49
    • 0034598936 scopus 로고    scopus 로고
    • Looping, linking, and chromatin activity: New insights into beta-globin locus regulation
    • Engel, J. D. & Tanimoto, K. Looping, linking, and chromatin activity: new insights into beta-globin locus regulation. Cell 100, 499-502 (2000).
    • (2000) Cell , vol.100 , pp. 499-502
    • Engel, J.D.1    Tanimoto, K.2
  • 50
    • 0033215443 scopus 로고    scopus 로고
    • Looping versus linking: Toward a model for long-distance gene activation
    • DOI 10.1101/gad.13.19.2465
    • Bulger, M. & Groudine, M. Looping versus linking: toward a model for long-distance gene activation. Genes Dev. 13, 2465-2477 (1999). (Pubitemid 29489638)
    • (1999) Genes and Development , vol.13 , Issue.19 , pp. 2465-2477
    • Bulger, M.1    Groudine, M.2
  • 51
    • 70349326007 scopus 로고    scopus 로고
    • Genomic interactions: Chromatin loops and gene meeting points in transcriptional regulation
    • Sexton, T., Bantignies, F. & Cavalli, G. Genomic interactions: chromatin loops and gene meeting points in transcriptional regulation. Semin. Cell Dev. Biol. 20, 849-855 (2009).
    • (2009) Semin. Cell Dev. Biol. , vol.20 , pp. 849-855
    • Sexton, T.1    Bantignies, F.2    Cavalli, G.3
  • 52
    • 67549119096 scopus 로고    scopus 로고
    • CTCF: Master weaver of the genome
    • Phillips, J. E. & Corces, V. G. CTCF: master weaver of the genome. Cell 137, 1194-1211 (2009).
    • (2009) Cell , vol.137 , pp. 1194-1211
    • Phillips, J.E.1    Corces, V.G.2
  • 53
    • 17444369067 scopus 로고    scopus 로고
    • Remote control of gene transcription
    • DOI 10.1093/hmg/ddi104
    • West, A. G. & Fraser, P. Remote control of gene transcription. Hum. Mol. Genet. 14, R101-R111 (2005). (Pubitemid 40542626)
    • (2005) Human Molecular Genetics , vol.14 , Issue.SPEC. ISS. 1
    • West, A.G.1    Fraser, P.2
  • 54
    • 2342485824 scopus 로고    scopus 로고
    • Does looping and clustering in the nucleus regulate gene expression?
    • DOI 10.1016/j.ceb.2004.03.004, PII S0955067404000420
    • Chambeyron, S. & Bickmore, W. A. Does looping and clustering in the nucleus regulate gene expression? Curr. Opin. Cell Biol. 16, 256-262 (2004). . (Pubitemid 38610405)
    • (2004) Current Opinion in Cell Biology , vol.16 , Issue.3 , pp. 256-262
    • Chambeyron, S.1    Bickmore, W.A.2
  • 55
    • 0037083376 scopus 로고    scopus 로고
    • Capturing chromosome conformation
    • DOI 10.1126/science.1067799
    • Dekker, J., Rippe, K., Dekker, M. & Kleckner, N. Capturing chromosome conformation. Science 295, 1306-1311 (2002). (Pubitemid 34157624)
    • (2002) Science , vol.295 , Issue.5558 , pp. 1306-1311
    • Dekker, J.1    Rippe, K.2    Dekker, M.3    Kleckner, N.4
  • 56
    • 35748956435 scopus 로고    scopus 로고
    • An evaluation of 3C-based methods to capture DNA interactions
    • DOI 10.1038/nmeth1114, PII NMETH1114
    • Simonis, M., Kooren, J. & de Laat, W. An evaluation of 3C-based methods to capture DNA interactions. Nature Methods 4, 895-901 (2007). (Pubitemid 350042374)
    • (2007) Nature Methods , vol.4 , Issue.11 , pp. 895-901
    • Simonis, M.1    Kooren, J.2    De Laat, W.3
  • 57
    • 73949133990 scopus 로고    scopus 로고
    • Chromosome conformation capture (from 3C to 5C) and its ChIP-based modification
    • Vassetzky, Y. et al. Chromosome conformation capture (from 3C to 5C) and its ChIP-based modification. Methods Mol. Biol. 567, 171-188 (2009).
    • (2009) Methods Mol. Biol. , vol.567 , pp. 171-188
    • Vassetzky, Y.1
  • 58
    • 60349092237 scopus 로고    scopus 로고
    • Mapping cis- and trans- chromatin interaction networks using chromosome conformation capture (3C)
    • Miele, A. & Dekker, J. Mapping cis- and trans- chromatin interaction networks using chromosome conformation capture (3C). Methods Mol. Biol. 464, 105-121 (2009).
    • (2009) Methods Mol. Biol. , vol.464 , pp. 105-121
    • Miele, A.1    Dekker, J.2
  • 59
    • 58149333734 scopus 로고    scopus 로고
    • Long-range chromosomal interactions and gene regulation
    • Miele, A. & Dekker, J. Long-range chromosomal interactions and gene regulation. Mol. Biosyst. 4, 1046-1057 (2008).
    • (2008) Mol. Biosyst. , vol.4 , pp. 1046-1057
    • Miele, A.1    Dekker, J.2
  • 60
    • 77149139820 scopus 로고    scopus 로고
    • Enhancers: The abundance and function of regulatory sequences beyond promoters
    • Bulger, M. & Groudine, M. Enhancers: the abundance and function of regulatory sequences beyond promoters. Dev. Biol. 339, 250-25761.
    • Dev. Biol. , vol.339 , pp. 250-25761
    • Bulger, M.1    Groudine, M.2
  • 63
    • 5444237577 scopus 로고    scopus 로고
    • Long-range intrachromosomal interactions in the T helper type 2 cytokine locus
    • DOI 10.1038/ni1115
    • Spilianakis, C. G. & Flavell, R. A. Long-range intrachromosomal interactions in the T helper type 2 cytokine locus. Nature Immunol. 5, 1017-1027 (2004). (Pubitemid 41057721)
    • (2004) Nature Immunology , vol.5 , Issue.10 , pp. 1017-1027
    • Spilianakis, C.G.1    Flavell, R.A.2
  • 64
    • 33750465872 scopus 로고    scopus 로고
    • SATB1 packages densely looped, transcriptionally active chromatin for coordinated expression of cytokine genes
    • DOI 10.1038/ng1913, PII NG1913
    • Cai, S., Lee, C. C. & Kohwi-Shigematsu, T. SATB1 packages densely looped, transcriptionally active chromatin for coordinated expression of cytokine genes. Nature Genet. 38, 1278-1288 (2006). (Pubitemid 44646290)
    • (2006) Nature Genetics , vol.38 , Issue.11 , pp. 1278-1288
    • Cai, S.1    Lee, C.C.2    Kohwi-Shigematsu, T.3
  • 65
    • 73349090560 scopus 로고    scopus 로고
    • Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells
    • Schoenfelder, S. et al. Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells. Nature Genetics 42, 53-61 (2010).
    • (2010) Nature Genetics , vol.42 , pp. 53-61
    • Schoenfelder, S.1
  • 66
    • 0030885925 scopus 로고    scopus 로고
    • Cohesins: Chromosomal proteins that prevent premature separation of sister chromatids
    • DOI 10.1016/S0092-8674(01)80007-6
    • Michaelis, C., Ciosk, R. & Nasmyth, K. Cohesins: chromosomal proteins that prevent premature separation of sister chromatids. Cell 91, 35-45 (1997). (Pubitemid 27431311)
    • (1997) Cell , vol.91 , Issue.1 , pp. 35-45
    • Michaelis, C.1    Ciosk, R.2    Nasmyth, K.3
  • 67
    • 0030886602 scopus 로고    scopus 로고
    • A direct link between sister chromatid cohesion and chromosome condensation revealed through the analysis of MCD1 in S. cerevisiae
    • DOI 10.1016/S0092-8674(01)80008-8
    • Guacci, V., Koshland, D. & Strunnikov, A. A direct link between sister chromatid cohesion and chromosome condensation revealed through the analysis of MCD1 in, S. cerevisiae. Cell 91, 47-57 (1997). (Pubitemid 27431312)
    • (1997) Cell , vol.91 , Issue.1 , pp. 47-57
    • Guacci, V.1    Koshland, D.2    Strunnikov, A.3
  • 68
    • 22244481613 scopus 로고    scopus 로고
    • The structure and function of SMC and kleisin complexes
    • DOI 10.1146/annurev.biochem.74.082803.133219
    • Nasmyth, K. & Haering, C. H. The structure and function of SMC and kleisin complexes. Annu. Rev. Biochem. 74, 595-648 (2005). (Pubitemid 40995519)
    • (2005) Annual Review of Biochemistry , vol.74 , pp. 595-648
    • Nasmyth, K.1    Haering, C.H.2
  • 69
    • 0033018842 scopus 로고    scopus 로고
    • Nipped-B, a Drosophila homologue of chromosomal adherins, participates in activation by remote enhancers in the cut and Ultrabithorax genes
    • Rollins, R. A., Morcillo, P. & Dorsett, D. Nipped-B, a Drosophila homologue of chromosomal adherins, participates in activation by remote enhancers in the cut and Ultrabithorax genes. Genetics 152, 577-593 (1999). (Pubitemid 29272711)
    • (1999) Genetics , vol.152 , Issue.2 , pp. 577-593
    • Rollins, R.A.1    Morcillo, P.2    Dorsett, D.3
  • 70
    • 1842557791 scopus 로고    scopus 로고
    • Drosophila Nipped-B Protein Supports Sister Chromatid Cohesion and Opposes the Stromalin/Scc3 Cohesion Factor to Facilitate Long-Range Activation of the cut Gene
    • DOI 10.1128/MCB.24.8.3100-3111.2004
    • Rollins, R. A., Korom, M., Aulner, N., Martens, A. & Dorsett, D. Drosophila nipped-B protein supports sister chromatid cohesion and opposes the stromalin/Scc3 cohesion factor to facilitate long-range activation of the cut gene. Mol. Cell Biol. 24, 3100-3111 (2004). (Pubitemid 38452056)
    • (2004) Molecular and Cellular Biology , vol.24 , Issue.8 , pp. 3100-3111
    • Rollins, R.A.1    Korom, M.2    Aulner, N.3    Martens, A.4    Dorsett, D.5
  • 71
    • 28044453063 scopus 로고    scopus 로고
    • Effects of sister chromatid cohesion proteins on cut gene expression during wing development in Drosophila
    • DOI 10.1242/dev.02064
    • Dorsett, D. et al. Effects of sister chromatid cohesion proteins on cut gene expression during wing development in Drosophila. Development 132, 4743-4753 (2005). (Pubitemid 41685284)
    • (2005) Development , vol.132 , Issue.21 , pp. 4743-4753
    • Dorsett, D.1    Eissenberg, J.C.2    Misulovin, Z.3    Martens, A.4    Redding, B.5    McKim, K.6
  • 72
    • 38849130750 scopus 로고    scopus 로고
    • PiggyBac-Based Mosaic Screen Identifies a Postmitotic Function for Cohesin in Regulating Developmental Axon Pruning
    • DOI 10.1016/j.devcel.2007.11.001, PII S1534580707004194
    • Schuldiner, O. et al. piggyBac-based mosaic screen identifies a postmitotic function for cohesin in regulating developmental axon pruning. Dev. Cell 14, 227-238 (2008). (Pubitemid 351189171)
    • (2008) Developmental Cell , vol.14 , Issue.2 , pp. 227-238
    • Schuldiner, O.1    Berdnik, D.2    Levy, J.M.3    Wu, J.S.4    Luginbuhl, D.5    Gontang, A.C.6    Luo, L.7
  • 75
    • 38849121606 scopus 로고    scopus 로고
    • Cohesins functionally associate with CTCF on mammalian chromosome arms
    • Parelho, V. et al. Cohesins functionally associate with CTCF on mammalian chromosome arms. Cell 132, 422-433 (2008).
    • (2008) Cell , vol.132 , pp. 422-433
    • Parelho, V.1
  • 77
    • 39449111307 scopus 로고    scopus 로고
    • Cohesins localize with CTCF at the KSHV latency control region and at cellular c-myc and H19/Igf2 insulators
    • DOI 10.1038/emboj.2008.1, PII EMBOJ20081
    • Stedman, W. et al. Cohesins localize with CTCF at the KSHV latency control region and at cellular c-myc and H19/Igf2 insulators. EMBO J. 27, 654-666 (2008). (Pubitemid 351273124)
    • (2008) EMBO Journal , vol.27 , Issue.4 , pp. 654-666
    • Stedman, W.1    Kang, H.2    Lin, S.3    Kissil, J.L.4    Bartolomei, M.S.5    Lieberman, P.M.6
  • 79
    • 65649123756 scopus 로고    scopus 로고
    • Architectural roles of multiple chromatin insulators at the human apolipoprotein gene cluster
    • Mishiro, T. et al. Architectural roles of multiple chromatin insulators at the human apolipoprotein gene cluster. EMBO J. 28, 1234-1245 (2009).
    • (2009) EMBO J. , vol.28 , pp. 1234-1245
    • Mishiro, T.1
  • 80
    • 67650997080 scopus 로고    scopus 로고
    • Cohesins form chromosomal cis-interactions at the developmentally regulated IFNG locus
    • Hadjur, S. et al. Cohesins form chromosomal cis-interactions at the developmentally regulated IFNG locus. Nature 460, 410-413 (2009).
    • (2009) Nature , vol.460 , pp. 410-413
    • Hadjur, S.1
  • 81
    • 73649145481 scopus 로고    scopus 로고
    • Cohesin is required for higher-order chromatin conformation at the imprinted IGF2-H19 locus
    • Nativio, R. et al. Cohesin is required for higher-order chromatin conformation at the imprinted IGF2-H19 locus. PLoS Genet. 5, e1000739 (2009).
    • (2009) PLoS Genet. , vol.5
    • Nativio, R.1
  • 82
    • 77649261872 scopus 로고    scopus 로고
    • Cell type specificity of chromatin organization mediated by CTCF and cohesin
    • Hou, C., Dale, R. & Dean, A. Cell type specificity of chromatin organization mediated by CTCF and cohesin. Proc. Natl Acad. Sci. USA 107, 3651-3656 (2010).
    • (2010) Proc. Natl Acad. Sci. USA , vol.107 , pp. 3651-3656
    • Hou, C.1    Dale, R.2    Dean, A.3
  • 83
    • 77957139539 scopus 로고    scopus 로고
    • Mediator and cohesin connect gene expression and chromatin architecture
    • Kagey, M. H. et al. Mediator and cohesin connect gene expression and chromatin architecture. Nature 467, 430-435 (2010).
    • (2010) Nature , vol.467 , pp. 430-435
    • Kagey, M.H.1
  • 84
    • 77952367798 scopus 로고    scopus 로고
    • Widespread transcription at neuronal activity-regulated enhancers
    • Kim, T. K. et al. Widespread transcription at neuronal activity-regulated enhancers. Nature 465, 182-187 (2010).
    • (2010) Nature , vol.465 , pp. 182-187
    • Kim, T.K.1
  • 85
    • 33746472891 scopus 로고    scopus 로고
    • RNA interference machinery influences the nuclear organization of a chromatin insulator
    • DOI 10.1038/ng1850, PII NG1850
    • Lei, E. P. & Corces, V. G. RNA interference machinery influences the nuclear organization of a chromatin insulator. Nature Genet. 38, 936-941 (2006). (Pubitemid 44141664)
    • (2006) Nature Genetics , vol.38 , Issue.8 , pp. 936-941
    • Lei, E.P.1    Corces, V.G.2
  • 86
    • 78349252731 scopus 로고    scopus 로고
    • Mediation of CTCF transcriptional insulation by DEAD-box RNA-binding protein p68 and steroid receptor RNA activator SRA
    • Yao, H. et al. Mediation of CTCF transcriptional insulation by DEAD-box RNA-binding protein p68 and steroid receptor RNA activator SRA. Genes Dev. 24, 2543-2555 (2010).
    • (2010) Genes Dev. , vol.24 , pp. 2543-2555
    • Yao, H.1
  • 87
    • 77954572735 scopus 로고    scopus 로고
    • Long noncoding RNA as modular scaffold of histone modification complexes
    • Tsai, M. C. et al. Long noncoding RNA as modular scaffold of histone modification complexes. Science 329, 689-693 (2010).
    • (2010) Science , vol.329 , pp. 689-693
    • Tsai, M.C.1
  • 88
    • 79953748673 scopus 로고    scopus 로고
    • A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression
    • the press
    • Wang, K. C. et al. A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression. Nature (in the press).
    • Nature
    • Wang, K.C.1
  • 89
    • 0038511129 scopus 로고    scopus 로고
    • Histone H3 phosphorylation by ikk-α is critical for cytokine-induced gene expression
    • DOI 10.1038/nature01576
    • Yamamoto, Y., Verma, U. N., Prajapati, S., Kwak, Y. T. & Gaynor, R. B. Histone H3 phosphorylation by IKK-alpha is critical for cytokine-induced gene expression. Nature 423, 655-659 (2003). (Pubitemid 36713227)
    • (2003) Nature , vol.423 , Issue.6940 , pp. 655-659
    • Yumi, Y.1    Verma, U.N.2    Prajapati, S.3    Youn-Tae, K.4    Gaynor, R.B.5
  • 90
    • 35948954744 scopus 로고    scopus 로고
    • Phosphorylation of histone H3 at Ser10 facilitates RNA polymerase II release from promoter-proximal pausing in Drosophila
    • DOI 10.1101/gad.1604007
    • Ivaldi, M. S., Karam, C. S. & Corces, V. G. Phosphorylation of histone H3 at Ser10 facilitates RNA polymerase II release from promoter-proximal pausing in Drosophila. Genes Dev. 21, 2818-2831 (2007). (Pubitemid 350070726)
    • (2007) Genes and Development , vol.21 , Issue.21 , pp. 2818-2831
    • Soledad Ivaldi, M.1    Karam, C.S.2    Corces, V.G.3
  • 91
    • 34547599505 scopus 로고    scopus 로고
    • PIM1-dependent phosphorylation of histone H3 at serine 10 is required for MYC-dependent transcriptional activation and oncogenic transformation
    • DOI 10.1038/ncb1618, PII NCB1618
    • Zippo, A., De Robertis, A., Serafini, R. & Oliviero, S. PIM1-dependent phosphorylation of histone H3 at serine 10 is required for MYC-dependent transcriptional activation and oncogenic transformation. Nature Cell Biol. 9, 932-944 (2007). (Pubitemid 47190448)
    • (2007) Nature Cell Biology , vol.9 , Issue.8 , pp. 932-944
    • Zippo, A.1    De Robertis, A.2    Serafini, R.3    Oliviero, S.4
  • 92
    • 77954169398 scopus 로고    scopus 로고
    • 14-3-3 mediates histone cross-talk during transcription elongation in Drosophila
    • Karam, C. S., Kellner, W. A., Takenaka, N., Clemmons, A. W. & Corces, V. G. 14-3-3 mediates histone cross-talk during transcription elongation in Drosophila. PLoS Genet. 6, e1000975 (2010).
    • (2010) PLoS Genet. , vol.6
    • Karam, C.S.1    Kellner, W.A.2    Takenaka, N.3    Clemmons, A.W.4    Corces, V.G.5
  • 93
    • 41349094797 scopus 로고    scopus 로고
    • Transcription regulation through promoter-proximal pausing of RNA polymerase II
    • DOI 10.1126/science.1150843
    • Core, L. J. & Lis, J. T. Transcription regulation through promoter-proximal pausing of RNA polymerase II. Science 319, 1791-1792 (2008). (Pubitemid 351451556)
    • (2008) Science , vol.319 , Issue.5871 , pp. 1791-1792
    • Core, L.J.1    Lis, J.T.2
  • 94
    • 77249117148 scopus 로고    scopus 로고
    • CHD7 cooperates with PBAF to control multipotent neural crest formation
    • Bajpai, R. et al. CHD7 cooperates with PBAF to control multipotent neural crest formation. Nature 463, 958-962 (2010).
    • (2010) Nature , vol.463 , pp. 958-962
    • Bajpai, R.1
  • 95
    • 77950678085 scopus 로고    scopus 로고
    • Coordinated chromatin control: Structural and functional linkage of DNA and histone methylation
    • Cheng, X. & Blumenthal, R. M. Coordinated chromatin control: structural and functional linkage of DNA and histone methylation. Biochemistry 49, 2999-3008 (2010).
    • (2010) Biochemistry , vol.49 , pp. 2999-3008
    • Cheng, X.1    Blumenthal, R.M.2
  • 96
    • 67349190247 scopus 로고    scopus 로고
    • Linking DNA methylation and histone modification: Patterns and paradigms
    • Cedar, H. & Bergman, Y. Linking DNA methylation and histone modification: patterns and paradigms. Nature Rev. Genet. 10, 295-304 (2009).
    • (2009) Nature Rev. Genet. , vol.10 , pp. 295-304
    • Cedar, H.1    Bergman, Y.2
  • 97
    • 0037819447 scopus 로고    scopus 로고
    • Transcription regulation and animal diversity
    • DOI 10.1038/nature01763
    • Levine, M., Tjian, R. Transcription regulation and animal diversity. Nature 424,147-151 (2003). (Pubitemid 36858677)
    • (2003) Nature , vol.424 , Issue.6945 , pp. 147-151
    • Levine, M.1    Tjian, R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.