-
1
-
-
0002353040
-
Temperature adaptation of enzymes. Biological optimization through structure-function comrpomises
-
Somero, G. N. (1978) Temperature adaptation of enzymes. Biological optimization through structure-function comrpomises. Annu. Rev. Ecol. Syst. 9, 1-29
-
(1978)
Annu. Rev. Ecol. Syst.
, vol.9
, pp. 1-29
-
-
Somero, G.N.1
-
2
-
-
0028949615
-
Proteins and temperature
-
Somero, G. N. (1995) Proteins and temperature. Annu. Rev. Physiol. 57, 43-68
-
(1995)
Annu. Rev. Physiol.
, vol.57
, pp. 43-68
-
-
Somero, G.N.1
-
3
-
-
0032560505
-
Adjustment of conformational flexibility is a key event in the thermal adaptation of proteins
-
DOI 10.1073/pnas.95.13.7406
-
Závodszky, P., Kardos, J., Svingor, A., and Petsko, G. A. (1998) Adjustment of conformational flexibility is a key event in the thermal adaptation of proteins. Proc. Natl. Acad. Sci. U.S.A. 95, 7406-7411 (Pubitemid 28293265)
-
(1998)
Proceedings of the National Academy of Sciences of the United States of America
, vol.95
, Issue.13
, pp. 7406-7411
-
-
Zavodszky, P.1
Kardos, J.2
Svingor, A.3
Petsko, G.A.4
-
4
-
-
77956912541
-
Protein stability and enzyme activity at extreme biological temperatures
-
Feller, G. (2010) Protein stability and enzyme activity at extreme biological temperatures. J. Phys. Condes. Matter 22, 323101-323117
-
(2010)
J. Phys. Condes. Matter
, vol.22
, pp. 323101-323117
-
-
Feller, G.1
-
5
-
-
0033519723
-
Enzyme dynamics and hydrogen tunnelling in a thermophilic alcohol dehydrogenase
-
DOI 10.1038/20981
-
Kohen, A., Cannio, R., Bartolucci, S., and Klinman, J. P. (1999) Enzyme dynamics and hydrogen tunnelling in a thermophilic alcohol dehydrogenase. Nature 399, 496-499 (Pubitemid 29258858)
-
(1999)
Nature
, vol.399
, Issue.6735
, pp. 496-499
-
-
Kohen, A.1
Cannio, R.2
Bartoluccl, S.3
Klinman, J.P.4
-
6
-
-
0041821836
-
A perspective on enzyme catalysis
-
DOI 10.1126/science.1085515
-
Benkovic, S. J., and Hammes-Schiffer, S. (2003) A perspective on enzyme catalysis. Science 301, 1196-1202 (Pubitemid 37052200)
-
(2003)
Science
, vol.301
, Issue.5637
, pp. 1196-1202
-
-
Benkovic, S.J.1
Hammes-Schiffer, S.2
-
7
-
-
33746325760
-
Relating protein motion to catalysis
-
DOI 10.1146/annurev.biochem.75.103004.142800
-
Hammes-Schiffer, S., and Benkovic, S. J. (2006) Relating protein motion to catalysis. Annu. Rev. Biochem. 75, 519-541 (Pubitemid 44118042)
-
(2006)
Annual Review of Biochemistry
, vol.75
, pp. 519-541
-
-
Hammes-Schiffer, S.1
Benkovic, S.J.2
-
8
-
-
34249676309
-
An internal equilibrium preorganizes the enzyme-substrate complex for hydride tunneling in choline oxidase
-
DOI 10.1021/bi700255v
-
Fan, F., and Gadda, G. (2007) An internal equilibrium preorganizes the enzyme-substrate complex for hydride tunneling in choline oxidase. Biochemistry 46, 6402-6408 (Pubitemid 46842883)
-
(2007)
Biochemistry
, vol.46
, Issue.21
, pp. 6402-6408
-
-
Fan, F.1
Gadda, G.2
-
9
-
-
37249032102
-
Dynamic personalities of proteins
-
DOI 10.1038/nature06522, PII NATURE06522
-
Henzler-Wildman, K., and Kern, D. (2007) Dynamic personalities of proteins. Nature 450, 964-972 (Pubitemid 350273626)
-
(2007)
Nature
, vol.450
, Issue.7172
, pp. 964-972
-
-
Henzler-Wildman, K.1
Kern, D.2
-
10
-
-
40849097646
-
Freeenergy landscape of enzyme catalysis
-
Benkovic, S. J., Hammes, G. G., and Hammes-Schiffer, S. (2008) Freeenergy landscape of enzyme catalysis. Biochemistry 47, 3317-3321
-
(2008)
Biochemistry
, vol.47
, pp. 3317-3321
-
-
Benkovic, S.J.1
Hammes, G.G.2
Hammes-Schiffer, S.3
-
11
-
-
62249181529
-
An integrated model for enzyme catalysis emerges from studies of hydrogen tunneling
-
Klinman, J. P. (2009) An integrated model for enzyme catalysis emerges from studies of hydrogen tunneling. Chem. Phys. Lett. 471, 179-193
-
(2009)
Chem. Phys. Lett.
, vol.471
, pp. 179-193
-
-
Klinman, J.P.1
-
12
-
-
72249089538
-
Evidence to support the hypothesis that promoting vibrations enhance the rate of an enzyme catalyzed H-tunneling reaction
-
Pudney, C. R., Hay, S., Levy, C., Pang, J., Sutcliffe, M. J., Leys, D., and Scrutton, N. S. (2009) Evidence to support the hypothesis that promoting vibrations enhance the rate of an enzyme catalyzed H-tunneling reaction. J. Am. Chem. Soc. 131, 17072-17073
-
(2009)
J. Am. Chem. Soc.
, vol.131
, pp. 17072-17073
-
-
Pudney, C.R.1
Hay, S.2
Levy, C.3
Pang, J.4
Sutcliffe, M.J.5
Leys, D.6
Scrutton, N.S.7
-
13
-
-
79953823548
-
A dynamic knockout reveals that conformational fluctuations influence the chemical step of enzyme catalysis
-
Bhabha, G., Lee, J., Ekiert, D. C., Gam, J., Wilson, I. A., Dyson, H. J., Benkovic, S. J., and Wright, P. E. (2011) A dynamic knockout reveals that conformational fluctuations influence the chemical step of enzyme catalysis. Science 332, 234-238
-
(2011)
Science
, vol.332
, pp. 234-238
-
-
Bhabha, G.1
Lee, J.2
Ekiert, D.C.3
Gam, J.4
Wilson, I.A.5
Dyson, H.J.6
Benkovic, S.J.7
Wright, P.E.8
-
14
-
-
79959420922
-
Enzymatic transition states, transition-state analogs, dynamics, thermodynamics, and lifetimes
-
Schramm, V. L. (2011) Enzymatic transition states, transition-state analogs, dynamics, thermodynamics, and lifetimes. Annu. Rev. Biochem. 80, 703-732
-
(2011)
Annu. Rev. Biochem.
, vol.80
, pp. 703-732
-
-
Schramm, V.L.1
-
15
-
-
84856247363
-
Effects of the donor-acceptor distance and dynamics on hydride tunneling in the dihydrofolate reductase catalyzed reaction
-
Stojković, V., Perissinotti, L. L., Willmer, D., Benkovic, S. J., and Kohen, A. (2012) Effects of the donor-acceptor distance and dynamics on hydride tunneling in the dihydrofolate reductase catalyzed reaction. J. Am. Chem. Soc. 134, 1738-1745
-
(2012)
J. Am. Chem. Soc.
, vol.134
, pp. 1738-1745
-
-
Stojković, V.1
Perissinotti, L.L.2
Willmer, D.3
Benkovic, S.J.4
Kohen, A.5
-
16
-
-
84857542642
-
Exciton dynamics. Electrons take an unexpected turn
-
Glowacki, D. R., Harvey, J. N., and Mulholland, A. J. (2012) Exciton dynamics. Electrons take an unexpected turn. Nat. Chem. 4, 169-176
-
(2012)
Nat. Chem.
, vol.4
, pp. 169-176
-
-
Glowacki, D.R.1
Harvey, J.N.2
Mulholland, A.J.3
-
17
-
-
0031758464
-
Native protein fluctuations: The conformational-motion temperature and the inverse correlation of protein flexibility with protein stability
-
Tang, K. E., and Dill, K. A. (1998) Native protein fluctuations. The conformational-motion temperature and the inverse correlation of protein flexibility with protein stability. J. Biomol. Struct. Dyn. 16, 397-411 (Pubitemid 28524884)
-
(1998)
Journal of Biomolecular Structure and Dynamics
, vol.16
, Issue.2
, pp. 397-411
-
-
Tang, K.E.S.1
Dill, K.A.2
-
19
-
-
0023557882
-
Relationship of protein flexibility to thermostability
-
Vihinen, M. (1987) Relationship of protein flexibility to thermostability. Protein Eng. 1, 477-480
-
(1987)
Protein Eng.
, vol.1
, pp. 477-480
-
-
Vihinen, M.1
-
20
-
-
0025822794
-
Relation between stability, dynamics and enzyme activity in 3-phosphoglycerate kinases from yeast and Thermus thermophilus
-
Varley, P. G., and Pain, R. H. (1991) Relation between stability, dynamics and enzyme activity in 3-phosphoglycerate kinases from yeast and Thermus thermophilus. J. Mol. Biol. 220, 531-538
-
(1991)
J. Mol. Biol.
, vol.220
, pp. 531-538
-
-
Varley, P.G.1
Pain, R.H.2
-
21
-
-
3042709505
-
Thermal-activated protein mobility and its correlation with catalysis in thermophilic alcohol dehydrogenase
-
DOI 10.1073/pnas.0403337101
-
Liang, Z. X., Lee, T., Resing, K. A., Ahn, N. G., and Klinman, J. P. (2004) Thermal-activated protein mobility and its correlation with catalysis in thermophilic alcohol dehydrogenase. Proc. Natl. Acad. Sci. U.S.A. 101, 9556-9561 (Pubitemid 38869274)
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, Issue.26
, pp. 9556-9561
-
-
Liang, Z.-X.1
Lee, T.2
Resing, K.A.3
Ahn, N.G.4
Klinman, J.P.5
-
22
-
-
3543146757
-
Impact of protein flexibility on hydride-transfer parameters in thermophilic and psychrophilic alcohol dehydrogenases
-
DOI 10.1021/ja047087z
-
Liang, Z. X., Tsigos, I., Bouriotis, V., and Klinman, J. P. (2004) Impact of protein flexibility on hydride-transfer parameters in thermophilic and psychrophilic alcohol dehydrogenases. J. Am. Chem. Soc. 126, 9500-9501 (Pubitemid 39031012)
-
(2004)
Journal of the American Chemical Society
, vol.126
, Issue.31
, pp. 9500-9501
-
-
Liang, Z.-X.1
Tsigos, I.2
Bouriotis, V.3
Klinman, J.P.4
-
23
-
-
68049085675
-
A 21st century revisionist's view at a turning point in enzymology
-
Nagel, Z. D., and Klinman, J. P. (2009) A 21st century revisionist's view at a turning point in enzymology. Nat. Chem. Biol. 5, 543-550
-
(2009)
Nat. Chem. Biol.
, vol.5
, pp. 543-550
-
-
Nagel, Z.D.1
Klinman, J.P.2
-
24
-
-
79953218084
-
A twin-track approach has optimized proton and hydride transfer by dynamically coupled tunneling during the evolution of protochlorophyllide oxidoreductase
-
Heyes, D. J., Levy, C., Sakuma, M., Robertson, D. L., and Scrutton, N. S. (2011) A twin-track approach has optimized proton and hydride transfer by dynamically coupled tunneling during the evolution of protochlorophyllide oxidoreductase. J. Biol. Chem. 286, 11849-11854
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 11849-11854
-
-
Heyes, D.J.1
Levy, C.2
Sakuma, M.3
Robertson, D.L.4
Scrutton, N.S.5
-
25
-
-
80053000013
-
Comparative hydrogen-deuterium exchange for a mesophilic vs thermophilic dihydrofolate reductase at 25 °C. Identification of a single active site region with enhanced flexibility in the mesophilic protein
-
Oyeyemi, O. A., Sours, K. M., Lee, T., Kohen, A., Resing, K. A., Ahn, N. G., and Klinman, J. P. (2011) Comparative hydrogen-deuterium exchange for a mesophilic vs thermophilic dihydrofolate reductase at 25 °C. Identification of a single active site region with enhanced flexibility in the mesophilic protein. Biochemistry 50, 8251-8260
-
(2011)
Biochemistry
, vol.50
, pp. 8251-8260
-
-
Oyeyemi, O.A.1
Sours, K.M.2
Lee, T.3
Kohen, A.4
Resing, K.A.5
Ahn, N.G.6
Klinman, J.P.7
-
26
-
-
57349195545
-
Hydrogen tunneling in glucose oxidation by the Archaeon Thermoplasma acidophilum
-
Anandarajah, K., Schowen, K. B., and Schowen, R. L. (2008) Hydrogen tunneling in glucose oxidation by the Archaeon Thermoplasma acidophilum. Int. J. Res. Phys. Chem. Chem. Phys. 222, 1333-1347
-
(2008)
Int. J. Res. Phys. Chem. Chem. Phys.
, vol.222
, pp. 1333-1347
-
-
Anandarajah, K.1
Schowen, K.B.2
Schowen, R.L.3
-
27
-
-
67649610422
-
Effect of dimerization on the stability and catalytic activity of dihydrofolate reductase from the hyperthermophile Thermotoga maritima
-
Loveridge, E. J., Rodriguez, R. J., Swanwick, R. S., and Allemann, R. K. (2009) Effect of dimerization on the stability and catalytic activity of dihydrofolate reductase from the hyperthermophile Thermotoga maritima. Biochemistry 48, 5922-5933
-
(2009)
Biochemistry
, vol.48
, pp. 5922-5933
-
-
Loveridge, E.J.1
Rodriguez, R.J.2
Swanwick, R.S.3
Allemann, R.K.4
-
28
-
-
0014027517
-
A temperature-dependent conformational change in D-amino acid oxidase and its effect on catalysis
-
Massey, V., Curti, B., and Ganther, H. (1966) A temperature-dependent conformational change in D-amino acid oxidase and its effect on catalysis. J. Biol. Chem. 241, 2347-2357
-
(1966)
J. Biol. Chem.
, vol.241
, pp. 2347-2357
-
-
Massey, V.1
Curti, B.2
Ganther, H.3
-
29
-
-
0032103265
-
Purification and characterization of an alcohol dehydrogenase from the Antarctic psychrophile Moraxella sp. TAE123
-
DOI 10.1046/j.1432-1327.1998.2540356.x
-
Tsigos, I., Velonia, K., Smonou, I., and Bouriotis, V. (1998) Purification and characterization of an alcohol dehydrogenase from the Antarctic psychrophile Moraxella sp. TAE123. Eur. J. Biochem. 254, 356-362 (Pubitemid 28289391)
-
(1998)
European Journal of Biochemistry
, vol.254
, Issue.2
, pp. 356-362
-
-
Tsigos, I.1
Velonia, K.2
Smonou, I.3
Bouriotis, V.4
-
30
-
-
8744220635
-
Evidence for increased local flexibility in psychrophilic alcohol dehydrogenase relative to its thermophilic homologue
-
DOI 10.1021/bi049004x
-
Liang, Z. X., Tsigos, I., Lee, T., Bouriotis, V., Resing, K. A., Ahn, N. G., and Klinman, J. P. (2004) Evidence for increased local flexibility in psychrophilic alcohol dehydrogenase relative to its thermophilic homologue. Biochemistry 43, 14676-14683 (Pubitemid 39524942)
-
(2004)
Biochemistry
, vol.43
, Issue.46
, pp. 14676-14683
-
-
Liang, Z.-X.1
Tsigos, I.2
Lee, T.3
Bouriotis, V.4
Resing, K.A.5
Ahn, N.G.6
Klinman, J.P.7
-
31
-
-
79960580073
-
Impaired protein conformational landscapes as revealed in anomalous Arrhenius prefactors
-
Nagel, Z. D., Dong, M., Bahnson, B. J., and Klinman, J. P. (2011) Impaired protein conformational landscapes as revealed in anomalous Arrhenius prefactors. Proc. Natl. Acad. Sci. U.S.A. 108, 10520-10525
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, pp. 10520-10525
-
-
Nagel, Z.D.1
Dong, M.2
Bahnson, B.J.3
Klinman, J.P.4
-
32
-
-
84861379052
-
Active site hydrophobic residues impact hydrogen tunneling differently in a thermophilic alcohol dehydrogenase at optimal versus nonoptimal temperatures
-
Nagel, Z. D., Meadows, C. W., Dong, M., Bahnson, B. J., and Klinman, J. P. (2012) Active site hydrophobic residues impact hydrogen tunneling differently in a thermophilic alcohol dehydrogenase at optimal versus nonoptimal temperatures. Biochemistry 51, 4147-4156
-
(2012)
Biochemistry
, vol.51
, pp. 4147-4156
-
-
Nagel, Z.D.1
Meadows, C.W.2
Dong, M.3
Bahnson, B.J.4
Klinman, J.P.5
-
33
-
-
0001739497
-
Revisited, enthalpy of association of protein subunits
-
Weber, G. (1995) Revisited, enthalpy of association of protein subunits. J. Phys. Chem. 99, 1052-1059
-
(1995)
J. Phys. Chem.
, vol.99
, pp. 1052-1059
-
-
Weber, G.1
-
35
-
-
0034736285
-
Psychrophilic enzymes. Revisiting the thermodynamic parameters of activation may explain local flexibility
-
Lonhienne, T., Gerday, C., and Feller, G. (2000) Psychrophilic enzymes. Revisiting the thermodynamic parameters of activation may explain local flexibility. Biochim. Biophys. Acta 1543, 1-10
-
(2000)
Biochim. Biophys. Acta
, vol.1543
, pp. 1-10
-
-
Lonhienne, T.1
Gerday, C.2
Feller, G.3
-
36
-
-
33645498972
-
Psychrophilic microorganisms. Challenges for life
-
D'Amico, S., Collins, T., Marx, J. C., Feller, G., and Gerday, C. (2006) Psychrophilic microorganisms. Challenges for life. EMBORep. 7, 385-389
-
(2006)
EMBORep.
, vol.7
, pp. 385-389
-
-
D'Amico, S.1
Collins, T.2
Marx, J.C.3
Feller, G.4
Gerday, C.5
-
37
-
-
33847311388
-
Life at low temperatures. Is disorder the driving force?
-
Feller, G. (2007) Life at low temperatures. Is disorder the driving force? Extremophiles 11, 211-216
-
(2007)
Extremophiles
, vol.11
, pp. 211-216
-
-
Feller, G.1
-
38
-
-
33748601471
-
Tunneling and dynamics in enzymatic hydride transfer
-
DOI 10.1021/cr050301x
-
Nagel, Z. D., and Klinman, J. P. (2006) Tunneling and dynamics in enzymatic hydride transfer. Chem. Rev. 106, 3095-3118 (Pubitemid 44376928)
-
(2006)
Chemical Reviews
, vol.106
, Issue.8
, pp. 3095-3118
-
-
Nagel, Z.D.1
Klinman, J.P.2
-
39
-
-
79953708228
-
A rigidifying salt-bridge favors the activity of thermophilic enzyme at high temperatures at the expense of low-temperature activity
-
Lam, S. Y., Yeung, R. C. Y., Yu, T. H., Sze, K. H., and Wong, K. B. (2011) A rigidifying salt-bridge favors the activity of thermophilic enzyme at high temperatures at the expense of low-temperature activity. PLoS Biol. 9, 1-8
-
(2011)
PLoS Biol.
, vol.9
, pp. 1-8
-
-
Lam, S.Y.1
Yeung, R.C.Y.2
Yu, T.H.3
Sze, K.H.4
Wong, K.B.5
-
40
-
-
77951143923
-
Temperature dependence of the flexibility of thermophilic and mesophilic flavoenzymes of the nitroreductase fold
-
Merkley, E. D., Parson, W. W., and Daggett, V. (2010) Temperature dependence of the flexibility of thermophilic and mesophilic flavoenzymes of the nitroreductase fold. Protein Eng. Des. Sel. 23, 327-336
-
(2010)
Protein Eng. Des. Sel.
, vol.23
, pp. 327-336
-
-
Merkley, E.D.1
Parson, W.W.2
Daggett, V.3
-
41
-
-
0034327617
-
Protein flexibility correlates with degree of hydrogen tunneling in thermophilic and mesophilic alcohol dehydrogenases
-
Kohen, A., and Klinman, J. P. (2000) Protein flexibility correlates with degree of hydrogen tunneling in thermophilic and mesophilic alcohol dehydrogenases. J. Am. Chem. Soc. 122, 10738-10739
-
(2000)
J. Am. Chem. Soc.
, vol.122
, pp. 10738-10739
-
-
Kohen, A.1
Klinman, J.P.2
-
42
-
-
4744343045
-
Linkage between dynamics and catalysis in a thermophilic-mesophilic enzyme pair
-
DOI 10.1038/nsmb821
-
Wolf-Watz, M., Thai, V., Henzler-Wildman, K., Hadjipavlou, G., Eisenmesser, E. Z., and Kern, D. (2004) Linkage between dynamics and catalysis in a thermophilic-mesophilic enzyme pair. Nat. Struct. Mol. Biol. 11, 945-949 (Pubitemid 39315297)
-
(2004)
Nature Structural and Molecular Biology
, vol.11
, Issue.10
, pp. 945-949
-
-
Wolf-Watz, M.1
Thai, V.2
Henzler-Wildman, K.3
Hadjipavlou, G.4
Eisenmesser, E.Z.5
Kern, D.6
-
43
-
-
0034237284
-
Aromatic interactions in homeodomains contribute to the low quantum yield of a conserved, buried tryptophan
-
DOI 10.1002/(SICI)1097-0134(20000701)40:1<112::AID
-
Nanda, V., and Brand, L. (2000) Aromatic interactions in homeodomains contribute to the low quantum yield of a conserved, buried tryptophan. Proteins 40, 112-125 (Pubitemid 30368587)
-
(2000)
Proteins: Structure, Function and Genetics
, vol.40
, Issue.1
, pp. 112-125
-
-
Nanda, V.1
Brand, L.2
-
44
-
-
2442555149
-
Crystal Structure and Amide H/D Exchange of Binary Complexes of Alcohol Dehydrogenase from Bacillus stearothermophilus: Insight into Thermostability and Cofactor Binding
-
DOI 10.1021/bi049736p
-
Ceccarelli, C., Liang, Z. X., Strickler, M., Prehna, G., Goldstein, B. M., Klinman, J. P., and Bahnson, B. J. (2004) Crystal structure and amide H/D exchange of binary complexes of alcohol dehydrogenase from Bacillus stearothermophilus. Insight into thermostability and cofactor binding. Biochemistry 43, 5266-5277 (Pubitemid 38620918)
-
(2004)
Biochemistry
, vol.43
, Issue.18
, pp. 5266-5277
-
-
Ceccarelli, C.1
Liang, Z.-X.2
Strickler, M.3
Prehna, G.4
Goldstein, B.M.5
Klinman, J.P.6
Bahnson, B.J.7
-
45
-
-
0019880506
-
Structure of a triclinic ternary complex of horse liver alcohol dehydrogenase at 2.9-Å resolution
-
Eklund, H., Samma, J. P., Wallén, L., Brändén, C. I., Akeson, A., and Jones, T. A. (1981) Structure of a triclinic ternary complex of horse liver alcohol dehydrogenase at 2.9-Å resolution. J. Mol. Biol. 146, 561-587
-
(1981)
J. Mol. Biol.
, vol.146
, pp. 561-587
-
-
Eklund, H.1
Samma, J.P.2
Wallén, L.3
Brändén, C.I.4
Akeson, A.5
Jones, T.A.6
-
48
-
-
33748367252
-
Arrhenius curves of hydrogen transfers: Tunnel effects, isotope effects and effects of pre-equilibria
-
DOI 10.1098/rstb.2006.1872
-
Limbach, H. H., Lopez, J. M., and Kohen, A. (2006) Arrhenius curves of hydrogen transfers. Tunnel effects, isotope effects and effects of pre-equilibria. Philos. Trans. R. Soc. Lond. B Biol. Sci. 361, 1399-1415 (Pubitemid 44338500)
-
(2006)
Philosophical Transactions of the Royal Society B: Biological Sciences
, vol.361
, Issue.1472
, pp. 1399-1415
-
-
Limbach, H.-H.1
Lopez, J.M.2
Kohen, A.3
|