-
1
-
-
0141596172
-
Structural and functional adaptations to extreme temperatures in psychrophilic, mesophilic, and thermophilic DNA ligases
-
Georlette D, Damien B, Blaise V, Depiereux E, Uversky V. N, et al. (2003) Structural and functional adaptations to extreme temperatures in psychrophilic, mesophilic, and thermophilic DNA ligases. J Biol Chem 278: 37015-37023.
-
(2003)
J Biol Chem
, vol.278
, pp. 37015-37023
-
-
Georlette, D.1
Damien, B.2
Blaise, V.3
Depiereux, E.4
Uversky, V.N.5
-
2
-
-
3142653228
-
Structures and analysis of highly homologous psychrophilic, mesophilic, and thermophilic adenylate kinases
-
Bae E, Phillips G. N, (2004) Structures and analysis of highly homologous psychrophilic, mesophilic, and thermophilic adenylate kinases. J Biol Chem 279: 28202-28208.
-
(2004)
J Biol Chem
, vol.279
, pp. 28202-28208
-
-
Bae, E.1
Phillips, G.N.2
-
3
-
-
0037466287
-
Activity, stability and flexibility in glycosidases adapted to extreme thermal environments
-
Collins T, Meuwis M. A, Gerday C, Feller G, (2003) Activity, stability and flexibility in glycosidases adapted to extreme thermal environments. J Mol Biol 328: 419-428.
-
(2003)
J Mol Biol
, vol.328
, pp. 419-428
-
-
Collins, T.1
Meuwis, M.A.2
Gerday, C.3
Feller, G.4
-
4
-
-
23844458318
-
Increased flexibility as a strategy for cold adaptation: a comparative molecular dynamics study of cold- and warm-active uracil DNA glycosylase
-
Olufsen M, Smalas A. O, Moe E, Brandsdal B. O, (2005) Increased flexibility as a strategy for cold adaptation: a comparative molecular dynamics study of cold- and warm-active uracil DNA glycosylase. J Biol Chem 280: 18042-18048.
-
(2005)
J Biol Chem
, vol.280
, pp. 18042-18048
-
-
Olufsen, M.1
Smalas, A.O.2
Moe, E.3
Brandsdal, B.O.4
-
5
-
-
33646087677
-
Kinetics and energetics of ligand binding determined by microcalorimetry: insights into active site mobility in a psychrophilic alpha-amylase
-
D'Amico S, Sohier J. S, Feller G, (2006) Kinetics and energetics of ligand binding determined by microcalorimetry: insights into active site mobility in a psychrophilic alpha-amylase. J Mol Biol 358: 1296-1304.
-
(2006)
J Mol Biol
, vol.358
, pp. 1296-1304
-
-
D'Amico, S.1
Sohier, J.S.2
Feller, G.3
-
6
-
-
0028033122
-
Cold adaption of enzymes: structural comparison between salmon and bovine trypsins
-
Smalas A. O, Heimstad E. S, Hordvik A, Willassen N. P, Male R, (1994) Cold adaption of enzymes: structural comparison between salmon and bovine trypsins. Proteins 20: 149-166.
-
(1994)
Proteins
, vol.20
, pp. 149-166
-
-
Smalas, A.O.1
Heimstad, E.S.2
Hordvik, A.3
Willassen, N.P.4
Male, R.5
-
7
-
-
0032530086
-
Hot spots in cold adaptation: localized increases in conformational flexibility in lactate dehydrogenase A4 orthologs of Antarctic notothenioid fishes
-
Fields P. A, Somero G. N, (1998) Hot spots in cold adaptation: localized increases in conformational flexibility in lactate dehydrogenase A4 orthologs of Antarctic notothenioid fishes. Proc Natl Acad Sci U S A 95: 11476-11481.
-
(1998)
Proc Natl Acad Sci U S A
, vol.95
, pp. 11476-11481
-
-
Fields, P.A.1
Somero, G.N.2
-
8
-
-
33847311388
-
Life at low temperatures: is disorder the driving force?
-
Feller G, (2006) Life at low temperatures: is disorder the driving force? Extremophiles 11: 211-216.
-
(2006)
Extremophiles
, vol.11
, pp. 211-216
-
-
Feller, G.1
-
10
-
-
0037424370
-
Activity-stability relationships in extremophilic enzymes
-
D'Amico S, Marx J. C, Gerday C, Feller G, (2003) Activity-stability relationships in extremophilic enzymes. J Biol Chem 278: 7891-7896.
-
(2003)
J Biol Chem
, vol.278
, pp. 7891-7896
-
-
D'Amico, S.1
Marx, J.C.2
Gerday, C.3
Feller, G.4
-
11
-
-
0032560505
-
Adjustment of conformational flexibility is a key event in the thermal adaptation of proteins
-
Zavodszky P, Kardos J, Svingor, Petsko G. A, (1998) Adjustment of conformational flexibility is a key event in the thermal adaptation of proteins. Proc Natl Acad Sci U S A 95: 7406-7411.
-
(1998)
Proc Natl Acad Sci U S A
, vol.95
, pp. 7406-7411
-
-
Zavodszky, P.1
Kardos, J.2
Svingor3
Petsko, G.A.4
-
12
-
-
0030681029
-
Common-type acylphosphatase: steady-state kinetics and leaving-group dependence
-
Paoli P, Cirri P, Camici L, Manao G, Cappugi G, et al. (1997) Common-type acylphosphatase: steady-state kinetics and leaving-group dependence. Biochem J 327: 177-184.
-
(1997)
Biochem J
, vol.327
, pp. 177-184
-
-
Paoli, P.1
Cirri, P.2
Camici, L.3
Manao, G.4
Cappugi, G.5
-
13
-
-
0031568309
-
Crystal structure of common type acylphosphatase from bovine testis
-
Thunnissen M. M, Taddei N, Liguri G, Ramponi G, Nordlund P, (1997) Crystal structure of common type acylphosphatase from bovine testis. Structure 5: 69-79.
-
(1997)
Structure
, vol.5
, pp. 69-79
-
-
Thunnissen, M.M.1
Taddei, N.2
Liguri, G.3
Ramponi, G.4
Nordlund, P.5
-
14
-
-
15444372698
-
Crystal structure of a hyperthermophilic archaeal acylphosphatase from Pyrococcus horikoshii-structural insights into enzymatic catalysis, thermostability, and dimerization
-
Cheung Y. Y, Lam S. Y, Chu W. K, Allen M. D, Bycroft M, et al. (2005) Crystal structure of a hyperthermophilic archaeal acylphosphatase from Pyrococcus horikoshii-structural insights into enzymatic catalysis, thermostability, and dimerization. Biochemistry 44: 4601-4611.
-
(2005)
Biochemistry
, vol.44
, pp. 4601-4611
-
-
Cheung, Y.Y.1
Lam, S.Y.2
Chu, W.K.3
Allen, M.D.4
Bycroft, M.5
-
15
-
-
30344478570
-
Structure, conformational stability, and enzymatic properties of acylphosphatase from the hyperthermophile Sulfolobus solfataricus
-
Corazza A, Rosano C, Pagano K, Alverdi V, Esposito G, et al. (2006) Structure, conformational stability, and enzymatic properties of acylphosphatase from the hyperthermophile Sulfolobus solfataricus. Proteins 62: 64-79.
-
(2006)
Proteins
, vol.62
, pp. 64-79
-
-
Corazza, A.1
Rosano, C.2
Pagano, K.3
Alverdi, V.4
Esposito, G.5
-
16
-
-
33646896529
-
Crystallization and preliminary crystallographic analysis of human common-type acylphosphatase
-
Yeung R. C, Lam S. Y, Wong K. B, (2006) Crystallization and preliminary crystallographic analysis of human common-type acylphosphatase. Acta Cryt F 62: 80-82.
-
(2006)
Acta Cryt F
, vol.62
, pp. 80-82
-
-
Yeung, R.C.1
Lam, S.Y.2
Wong, K.B.3
-
17
-
-
14644399127
-
Three-dimensional structural characterization of a novel Drosophila melanogaster acylphosphatase
-
Zuccotti S, Rosano C, Ramazzotti M, Degl'Innocenti D, Stefani M, et al. (2004) Three-dimensional structural characterization of a novel Drosophila melanogaster acylphosphatase. Acta Cryst D 60: 1177-1179.
-
(2004)
Acta Cryst D
, vol.60
, pp. 1177-1179
-
-
Zuccotti, S.1
Rosano, C.2
Ramazzotti, M.3
Degl'Innocenti, D.4
Stefani, M.5
-
18
-
-
0034663722
-
The penultimate rotamer library
-
Lovell S. C, Word J. M, Richardson J. S, Richardson D. C, (2000) The penultimate rotamer library. Proteins 40: 389-408.
-
(2000)
Proteins
, vol.40
, pp. 389-408
-
-
Lovell, S.C.1
Word, J.M.2
Richardson, J.S.3
Richardson, D.C.4
-
19
-
-
0343986414
-
Mirror image mutations reveal the significance of an intersubunit ion cluster in the stability of 3-isopropylmalate dehydrogenase
-
Németh A, Svingor A, Pócsik M, Dobó J, Magyar C, et al. (2000) Mirror image mutations reveal the significance of an intersubunit ion cluster in the stability of 3-isopropylmalate dehydrogenase. FEBS Lett 468: 48-52.
-
(2000)
FEBS Lett
, vol.468
, pp. 48-52
-
-
Németh, A.1
Svingor, A.2
Pócsik, M.3
Dobó, J.4
Magyar, C.5
-
22
-
-
33748633480
-
Electrostatic basis for enzyme catalysis
-
Warshel A, Sharma P. K, Kato M, Xiang Y, Liu H, et al. (2006) Electrostatic basis for enzyme catalysis. Chem Rev 106: 3210-3235.
-
(2006)
Chem Rev
, vol.106
, pp. 3210-3235
-
-
Warshel, A.1
Sharma, P.K.2
Kato, M.3
Xiang, Y.4
Liu, H.5
-
23
-
-
37349007321
-
On the relationship between thermal stability and catalytic power of enzymes
-
Roca M, Liu H, Messer B, Warshel A, (2007) On the relationship between thermal stability and catalytic power of enzymes. Biochemistry 46: 15076-15088.
-
(2007)
Biochemistry
, vol.46
, pp. 15076-15088
-
-
Roca, M.1
Liu, H.2
Messer, B.3
Warshel, A.4
-
24
-
-
0029395478
-
Win some, lose some: enthalpy-entropy compensation in weak intermolecular interactions
-
Dunitz J. D, (1995) Win some, lose some: enthalpy-entropy compensation in weak intermolecular interactions. Chem Biol 2: 709-712.
-
(1995)
Chem Biol
, vol.2
, pp. 709-712
-
-
Dunitz, J.D.1
-
25
-
-
0030681366
-
Psychrophilic enzymes: molecular basis of cold adaptation
-
Feller G, Gerday C, (1997) Psychrophilic enzymes: molecular basis of cold adaptation. Cell Mol Life Sci 53: 830-841.
-
(1997)
Cell Mol Life Sci
, vol.53
, pp. 830-841
-
-
Feller, G.1
Gerday, C.2
-
26
-
-
10744230827
-
Some like it cold: biocatalysis at low temperatures
-
Georlette D, Blaise V, Collins T, D'Amico S, Gratia E, et al. (2004) Some like it cold: biocatalysis at low temperatures. FEMS Microbiol Rev 28: 25-42.
-
(2004)
FEMS Microbiol Rev
, vol.28
, pp. 25-42
-
-
Georlette, D.1
Blaise, V.2
Collins, T.3
D'Amico, S.4
Gratia, E.5
-
27
-
-
0016771835
-
Stereochemical basis of heat stability in bacterial ferredoxins and in haemoglobin A2
-
Perutz M. F, Raidt H, (1975) Stereochemical basis of heat stability in bacterial ferredoxins and in haemoglobin A2. Nature 255: 256-259.
-
(1975)
Nature
, vol.255
, pp. 256-259
-
-
Perutz, M.F.1
Raidt, H.2
-
28
-
-
0031580199
-
Protein thermal stability, hydrogen bonds, and ion pairs
-
Vogt G, Woell S, Argos P, (1997) Protein thermal stability, hydrogen bonds, and ion pairs. J Mol Biol 269: 631-643.
-
(1997)
J Mol Biol
, vol.269
, pp. 631-643
-
-
Vogt, G.1
Woell, S.2
Argos, P.3
-
29
-
-
0039116206
-
Structural differences between mesophilic, moderately thermophilic and extremely thermophilic protein subunits: results of a comprehensive survey
-
Szilágyi A, Závodszky P, (2000) Structural differences between mesophilic, moderately thermophilic and extremely thermophilic protein subunits: results of a comprehensive survey. Structure 8: 493-504.
-
(2000)
Structure
, vol.8
, pp. 493-504
-
-
Szilágyi, A.1
Závodszky, P.2
-
30
-
-
0037432563
-
Contribution of surface salt bridges to protein stability: guidelines for protein engineering
-
Makhatadze G, Loladze V, Ermolenko D, Chen X, Thomas S, (2003) Contribution of surface salt bridges to protein stability: guidelines for protein engineering. J Mol Biol 327: 1135-1148.
-
(2003)
J Mol Biol
, vol.327
, pp. 1135-1148
-
-
Makhatadze, G.1
Loladze, V.2
Ermolenko, D.3
Chen, X.4
Thomas, S.5
-
31
-
-
0034673153
-
Contribution of surface salt bridges to protein stability
-
Strop P, Mayo S, (2000) Contribution of surface salt bridges to protein stability. Biochemistry 39: 1251-1255.
-
(2000)
Biochemistry
, vol.39
, pp. 1251-1255
-
-
Strop, P.1
Mayo, S.2
-
32
-
-
0033603392
-
Electrostatic contributions to the stability of hyperthermophilic proteins
-
Xiao L, Honig B, (1999) Electrostatic contributions to the stability of hyperthermophilic proteins. J Mol Biol 289: 1435-1444.
-
(1999)
J Mol Biol
, vol.289
, pp. 1435-1444
-
-
Xiao, L.1
Honig, B.2
-
33
-
-
0028204490
-
Do salt bridges stabilize proteins? A continuum electrostatic analysis
-
Hendsch Z, Tidor B, (1994) Do salt bridges stabilize proteins? A continuum electrostatic analysis. Protein Sci 3: 211.
-
(1994)
Protein Sci
, vol.3
, pp. 211
-
-
Hendsch, Z.1
Tidor, B.2
-
34
-
-
0032872888
-
Increasing protein stability by altering long-range coulombic interactions
-
Grimsley G, Shaw K, Fee L, Alston R, Huyghues-Despointes B, et al. (1999) Increasing protein stability by altering long-range coulombic interactions. Protein Sci 8: 1843-1849.
-
(1999)
Protein Sci
, vol.8
, pp. 1843-1849
-
-
Grimsley, G.1
Shaw, K.2
Fee, L.3
Alston, R.4
Huyghues-Despointes, B.5
-
35
-
-
29344472867
-
Effects of charge-to-alanine substitutions on the stability of ribosomal protein L30e from Thermococcus celer
-
Lee C, Makhatadze G, Wong K, (2005) Effects of charge-to-alanine substitutions on the stability of ribosomal protein L30e from Thermococcus celer. Biochemistry 44: 16817-16825.
-
(2005)
Biochemistry
, vol.44
, pp. 16817-16825
-
-
Lee, C.1
Makhatadze, G.2
Wong, K.3
-
36
-
-
0033554840
-
Engineering a thermostable protein via optimization of charge-charge interactions on the protein surface
-
Loladze V, Ibarra-Molero B, Sanchez-Ruiz J, Makhatadze G, (1999) Engineering a thermostable protein via optimization of charge-charge interactions on the protein surface. Biochemistry 38: 16419-16423.
-
(1999)
Biochemistry
, vol.38
, pp. 16419-16423
-
-
Loladze, V.1
Ibarra-Molero, B.2
Sanchez-Ruiz, J.3
Makhatadze, G.4
-
37
-
-
0034100848
-
Two exposed amino acid residues confer thermostability on a cold shock protein
-
Perl D, Mueller U, Heinemann U, Schmid F. X, (2000) Two exposed amino acid residues confer thermostability on a cold shock protein. Nat Struct Biol 7: 380-383.
-
(2000)
Nat Struct Biol
, vol.7
, pp. 380-383
-
-
Perl, D.1
Mueller, U.2
Heinemann, U.3
Schmid, F.X.4
-
39
-
-
0034620528
-
Rational modification of protein stability by the mutation of charged surface residues
-
Spector S, Wang M, Carp S. A, Robblee J, Hendsch Z. S, et al. (2000) Rational modification of protein stability by the mutation of charged surface residues. Biochemistry 39: 872-879.
-
(2000)
Biochemistry
, vol.39
, pp. 872-879
-
-
Spector, S.1
Wang, M.2
Carp, S.A.3
Robblee, J.4
Hendsch, Z.S.5
-
40
-
-
62449293337
-
Rational stabilization of enzymes by computational redesign of surface charge-charge interactions
-
Gribenko A, Patel M, Liu J, McCallum S, Wang C, et al. (2009) Rational stabilization of enzymes by computational redesign of surface charge-charge interactions. Proc Natl Acad Sci U S A 106: 2601.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 2601
-
-
Gribenko, A.1
Patel, M.2
Liu, J.3
McCallum, S.4
Wang, C.5
-
41
-
-
0041384407
-
Temperature adaptation of proteins: engineering mesophilic-like activity and stability in a cold-adapted alpha-amylase
-
D'Amico S, Gerday C, Feller G, (2003) Temperature adaptation of proteins: engineering mesophilic-like activity and stability in a cold-adapted alpha-amylase. J Mol Biol 332: 981-988.
-
(2003)
J Mol Biol
, vol.332
, pp. 981-988
-
-
D'Amico, S.1
Gerday, C.2
Feller, G.3
-
42
-
-
0037159205
-
Coupling interactions of distal residues enhance dihydrofolate reductase catalysis: mutational effects on hydride transfer rates
-
Rajagopalan P. T, Lutz S, Benkovic S. J, (2002) Coupling interactions of distal residues enhance dihydrofolate reductase catalysis: mutational effects on hydride transfer rates. Biochemistry 41: 12618-12628.
-
(2002)
Biochemistry
, vol.41
, pp. 12618-12628
-
-
Rajagopalan, P.T.1
Lutz, S.2
Benkovic, S.J.3
-
43
-
-
0028103275
-
The CCP4 suite: programs for protein crystallography
-
Collaborative Computational Project 4
-
Collaborative Computational Project 4 (1994) The CCP4 suite: programs for protein crystallography. Acta Cryst D 50: 760-763.
-
(1994)
Acta Cryst D
, vol.50
, pp. 760-763
-
-
-
44
-
-
0032790081
-
XtalView/Xfit-a versatile program for manipulating atomic coordinates and electron density
-
McRee D. E, (1999) XtalView/Xfit-a versatile program for manipulating atomic coordinates and electron density. J Struct Biol 125: 156-165.
-
(1999)
J Struct Biol
, vol.125
, pp. 156-165
-
-
McRee, D.E.1
-
45
-
-
3543012707
-
Crystallography & NMR system: a new software suite for macromolecular structure determination
-
Brunger A. T, Adams P. D, Clore G. M, DeLano W. L, Gros P, et al. (1998) Crystallography & NMR system: a new software suite for macromolecular structure determination. Acta Cryst D 54: 905-921.
-
(1998)
Acta Cryst D
, vol.54
, pp. 905-921
-
-
Brunger, A.T.1
Adams, P.D.2
Clore, G.M.3
de Lano, W.L.4
Gros, P.5
-
46
-
-
0026655361
-
Stereochemical quality of protein structure coordinates
-
Morris A. L, MacArthur M. W, Hutchinson E. G, Thornton J. M, (1992) Stereochemical quality of protein structure coordinates. Proteins 12: 345-364.
-
(1992)
Proteins
, vol.12
, pp. 345-364
-
-
Morris, A.L.1
MacArthur, M.W.2
Hutchinson, E.G.3
Thornton, J.M.4
-
47
-
-
0030047142
-
Errors in protein structures
-
Hooft R. W, Vriend G, Sander C, Abola E. E, (1996) Errors in protein structures. Nature 381: 272.
-
(1996)
Nature
, vol.381
, pp. 272
-
-
Hooft, R.W.1
Vriend, G.2
Sander, C.3
Abola, E.E.4
-
48
-
-
34547592557
-
MolProbity: all-atom contacts and structure validation for proteins and nucleic acids
-
Davis I. W, Leaver-Fay A, Chen V. B, Block J. N, Kapral G. J, et al. (2007) MolProbity: all-atom contacts and structure validation for proteins and nucleic acids. Nucleic Acids Res 35: W375-W383.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Davis, I.W.1
Leaver-Fay, A.2
Chen, V.B.3
Block, J.N.4
Kapral, G.J.5
-
49
-
-
0035789518
-
GROMACS 3.0: a package for molecular simulation and trajectory analysis
-
Lindahl E, Hess B, van der Spoel D, (2001) GROMACS 3.0: a package for molecular simulation and trajectory analysis. J Mol Mod 7: 306-317.
-
(2001)
J Mol Mod
, vol.7
, pp. 306-317
-
-
Lindahl, E.1
Hess, B.2
van der Spoel, D.3
|