-
1
-
-
0025783442
-
Fidelity mechanisms in DNA replication
-
Echols, H., and Goodman, M. F. (1991) Fidelity mechanisms in DNA replication. Annu. Rev. Biochem. 60, 477-511
-
(1991)
Annu. Rev. Biochem
, vol.60
, pp. 477-511
-
-
Echols, H.1
Goodman, M.F.2
-
2
-
-
0035997351
-
Active site tightness and substrate fit in DNA replication
-
Kool, E. T. (2002) Active site tightness and substrate fit in DNA replication. Annu. Rev. Biochem. 71, 191-219
-
(2002)
Annu. Rev. Biochem
, vol.71
, pp. 191-219
-
-
Kool, E.T.1
-
3
-
-
27144542782
-
Fidelity of Dpo4: Effect of metal ions, nucleotide selection, and pyrophosphorolysis
-
Vaisman, A., Ling, H., Woodgate, R., and Yang, W. (2005) Fidelity of Dpo4: effect of metal ions, nucleotide selection, and pyrophosphorolysis. EMBO J. 24, 2957-2967
-
(2005)
EMBO J
, vol.24
, pp. 2957-2967
-
-
Vaisman, A.1
Ling, H.2
Woodgate, R.3
Yang, W.4
-
4
-
-
0023770718
-
Kinetic mechanism whereby DNA polymerase i (Klenow) replicates DNA with high fidelity
-
Kuchta, R. D., Benkovic, P., and Benkovic, S. J. (1988) Kinetic mechanism whereby DNA polymerase I (Klenow) replicates DNA with high fidelity. Biochemistry 27, 6716-6725
-
(1988)
Biochemistry
, vol.27
, pp. 6716-6725
-
-
Kuchta, R.D.1
Benkovic, P.2
Benkovic, S.J.3
-
5
-
-
0023657032
-
Kinetic mechanism of DNA polymerase i (Klenow)
-
Kuchta, R. D., Mizrahi, V., Benkovic, P. A., Johnson, K. A., and Benkovic, S. J. (1987) Kinetic mechanism of DNA polymerase I (Klenow). Biochemistry 26, 8410-8417
-
(1987)
Biochemistry
, vol.26
, pp. 8410-8417
-
-
Kuchta, R.D.1
Mizrahi, V.2
Benkovic, P.A.3
Johnson, K.A.4
Benkovic, S.J.5
-
6
-
-
0027092323
-
Mechanism and fidelity of HIV reverse transcriptase
-
Kati, W. M., Johnson, K. A., Jerva, L. F., and Anderson, K. S. (1992) Mechanism and fidelity of HIV reverse transcriptase. J. Biol. Chem. 267, 25988-25997
-
(1992)
J. Biol. Chem
, vol.267
, pp. 25988-25997
-
-
Kati, W.M.1
Johnson, K.A.2
Jerva, L.F.3
Anderson, K.S.4
-
7
-
-
0026033193
-
Pre-steady-state kinetic analysis of processive DNA replication including complete characterization of an exonuclease-deficient mutant
-
Patel, S. S., Wong, I., and Johnson, K. A. (1991) Pre-steady-state kinetic analysis of processive DNA replication including complete characterization of an exonuclease-deficient mutant. Biochemistry 30, 511-525
-
(1991)
Biochemistry
, vol.30
, pp. 511-525
-
-
Patel, S.S.1
Wong, I.2
Johnson, K.A.3
-
8
-
-
26844566830
-
Structure and mechanism of DNA polymerases
-
Rothwell, P. J., and Waksman, G. (2005) Structure and mechanism of DNA polymerases. Adv. Protein Chem. 71, 401-440
-
(2005)
Adv. Protein Chem
, vol.71
, pp. 401-440
-
-
Rothwell, P.J.1
Waksman, G.2
-
9
-
-
35349009532
-
A pre-equilibrium before nucleotide binding limits fingers subdomain closure by Klentaq1
-
Rothwell, P. J., and Waksman, G. (2007) A pre-equilibrium before nucleotide binding limits fingers subdomain closure by Klentaq1. J. Biol. Chem. 282, 28884-28892
-
(2007)
J. Biol. Chem
, vol.282
, pp. 28884-28892
-
-
Rothwell, P.J.1
Waksman, G.2
-
10
-
-
0032535528
-
Crystal structures of open and closed forms of binary and ternary complexes of the large fragment of Thermus aquaticus DNA polymerase I: Structural basis for nucleotide incorporation
-
Li, Y., Korolev, S., and Waksman, G. (1998) Crystal structures of open and closed forms of binary and ternary complexes of the large fragment of Thermus aquaticus DNA polymerase I: structural basis for nucleotide incorporation. EMBO J. 17, 7514-7525
-
(1998)
EMBO J
, vol.17
, pp. 7514-7525
-
-
Li, Y.1
Korolev, S.2
Waksman, G.3
-
11
-
-
0031861823
-
Crystal structures of the Klenow fragment of Thermus aquaticus DNA polymerase i complexed with deoxyribonucleoside triphosphates
-
Li, Y., Kong, Y., Korolev, S., and Waksman, G. (1998) Crystal structures of the Klenow fragment of Thermus aquaticus DNA polymerase I complexed with deoxyribonucleoside triphosphates. Protein Sci. 7, 1116-1123
-
(1998)
Protein Sci
, vol.7
, pp. 1116-1123
-
-
Li, Y.1
Kong, Y.2
Korolev, S.3
Waksman, G.4
-
12
-
-
0035019856
-
Crystal structures of a ddATP-, ddTTP-, ddCTP-, and ddGTP-trapped ternary complex of Klentaq1: Insights into nucleotide incorporation and selectivity
-
Li, Y., and Waksman, G. (2001) Crystal structures of a ddATP-, ddTTP-, ddCTP-, and ddGTP-trapped ternary complex of Klentaq1: Insights into nucleotide incorporation and selectivity. Protein Sci. 10, 1225-1233
-
(2001)
Protein Sci
, vol.10
, pp. 1225-1233
-
-
Li, Y.1
Waksman, G.2
-
13
-
-
0029056926
-
Crystal structure of the large fragment of Thermus aquaticus DNA-polymerase-I at 2.5-angstrom resolution-structural basis for thermostability
-
Korolev, S., Nayal, M., Barnes, W. M., Di Cera, E., and Waksman, G. (1995) Crystal structure of the large fragment of Thermus aquaticus DNA-polymerase-I at 2.5-angstrom resolution-structural basis for thermostability. Proc. Natl. Acad. Sci. U.S.A. 92, 9264-9268
-
(1995)
Proc. Natl. Acad. Sci. U.S.A.
, vol.92
, pp. 9264-9268
-
-
Korolev, S.1
Nayal, M.2
Barnes, W.M.3
Di Cera, E.4
Waksman, G.5
-
14
-
-
0021984004
-
Structure of large fragment of Escherichia coli DNA polymerase i complexed with dTMP
-
Ollis, D. L., Brick, P., Hamlin, R., Xuong, N. G., and Steitz, T. A. (1985) Structure of large fragment of Escherichia coli DNA polymerase I complexed with dTMP. Nature 313, 762-766
-
(1985)
Nature
, vol.313
, pp. 762-766
-
-
Ollis, D.L.1
Brick, P.2
Hamlin, R.3
Xuong, N.G.4
Steitz, T.A.5
-
15
-
-
0030760966
-
DNA polymerase β: Multiple conformational changes in the mechanism of catalysis
-
Zhong, X., Patel, S. S., Werneburg, B. G., and Tsai, M.-D. (1997) DNA polymerase β: multiple conformational changes in the mechanism of catalysis. Biochemistry 36, 11891-11900
-
(1997)
Biochemistry
, vol.36
, pp. 11891-11900
-
-
Zhong, X.1
Patel, S.S.2
Werneburg, B.G.3
Tsai, M.-D.4
-
16
-
-
0041817954
-
Variants of DNA polym erase β extend mispaired DNA due to increased affinity for nucleotide substrate
-
Shah, A. M., Maitra, M., and Sweasy, J. B. (2003) Variants of DNA polym erase β extend mispaired DNA due to increased affinity for nucleotide substrate. Biochemistry 42, 10709-10717
-
(2003)
Biochemistry
, vol.42
, pp. 10709-10717
-
-
Shah, A.M.1
Maitra, M.2
Sweasy, J.B.3
-
17
-
-
23044492225
-
Motions of the fingers subdomain of Klentaq1 are fast and not rate limiting: Implications for the molecular basis of fidelity in DNA polymerases
-
Rothwell, P. J., Mitaksov, V., and Waksman, G. (2005) Motions of the fingers subdomain of Klentaq1 are fast and not rate limiting: Implications for the molecular basis of fidelity in DNA polymerases. Mol. Cell 19, 345-355
-
(2005)
Mol. Cell
, vol.19
, pp. 345-355
-
-
Rothwell, P.J.1
Mitaksov, V.2
Waksman, G.3
-
18
-
-
0041823551
-
Use of 2-aminopurine fluorescence to examine conformational changes during nucleotide incorporation by DNA polymerase i (Klenow fragment)
-
Purohit, V., Grindley, N. D., and Joyce, C. M. (2003) Use of 2-aminopurine fluorescence to examine conformational changes during nucleotide incorporation by DNA polymerase I (Klenow fragment). Biochemistry 42, 10200-10211
-
(2003)
Biochemistry
, vol.42
, pp. 10200-10211
-
-
Purohit, V.1
Grindley, N.D.2
Joyce, C.M.3
-
19
-
-
0037799257
-
Rapid segmental and subdomain motions of DNA polymerase β
-
Kim, S.-J., Beard, W. A., Harvey, J., Shock, D. D., Knutson, J. R., and Wilson, S. H. (2003) Rapid segmental and subdomain motions of DNA polymerase β. J. Biol. Chem. 278, 5072-5081
-
(2003)
J. Biol. Chem
, vol.278
, pp. 5072-5081
-
-
Kim, S.-J.1
Beard, W.A.2
Harvey, J.3
Shock, D.D.4
Knutson, J.R.5
Wilson, S.H.6
-
20
-
-
0035793560
-
DNA structure and aspartate 276 influence nucleotide binding to human DNA polymerase β. Implication for the identity of the rate-limiting conformational change
-
Vande Berg, B. J., Beard, W. A., and Wilson, S. H. (2001) DNA structure and aspartate 276 influence nucleotide binding to human DNA polymerase β. Implication for the identity of the rate-limiting conformational change. J. Biol. Chem. 276, 3408-3416
-
(2001)
J. Biol. Chem
, vol.276
, pp. 3408-3416
-
-
Vande Berg, B.J.1
Beard, W.A.2
Wilson, S.H.3
-
21
-
-
76249127905
-
Conformational transitions in DNA polymerase i revealed by single molecule FRET
-
Santoso, Y., Joyce, C. M., Potapova, O., Le Reste, L., Hohlbein, J., Torella, J. P., Grindley, N. D., and Kapanidis, A. N. (2010) Conformational transitions in DNA polymerase I revealed by single molecule FRET. Proc. Natl. Acad. Sci. U.S.A. 107, 715-720
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 715-720
-
-
Santoso, Y.1
Joyce, C.M.2
Potapova, O.3
Le Reste, L.4
Hohlbein, J.5
Torella, J.P.6
Grindley, N.D.7
Kapanidis, A.N.8
-
22
-
-
79953853888
-
Identifying molecular dynamics in single molecule FRET experiments with burst variance analysis
-
Torella, J. P., Holden, S. J., Santoso, Y., Hohlbein, J., and Kapanidis, A. N. (2011) Identifying molecular dynamics in single molecule FRET experiments with burst variance analysis. Biophys. J. 100, 1568-1577
-
(2011)
Biophys. J
, vol.100
, pp. 1568-1577
-
-
Torella, J.P.1
Holden, S.J.2
Santoso, Y.3
Hohlbein, J.4
Kapanidis, A.N.5
-
23
-
-
79957603036
-
The structure of a high fidelity DNA polymerase bound to a mismatched nucleotide reveals an "ajar" intermediate conformation in the nucleotide selection mechanism
-
Wu, E. Y., and Beese, L. S. (2011) The structure of a high fidelity DNA polymerase bound to a mismatched nucleotide reveals an "ajar" intermediate conformation in the nucleotide selection mechanism. J. Biol. Chem. 286, 19758-19767
-
(2011)
J. Biol. Chem
, vol.286
, pp. 19758-19767
-
-
Wu, E.Y.1
Beese, L.S.2
-
24
-
-
39549088486
-
An intramolecular FRET system monitors fingers subdomain opening in Klentaq1
-
Allen, W. J., Rothwell, P. J., and Waksman, G. (2008) An intramolecular FRET system monitors fingers subdomain opening in Klentaq1. Protein Sci. 17, 401-408
-
(2008)
Protein Sci
, vol.17
, pp. 401-408
-
-
Allen, W.J.1
Rothwell, P.J.2
Waksman, G.3
-
25
-
-
0028913136
-
Fluorescence resonance energy transfer
-
Selvin, P. R. (1995) Fluorescence resonance energy transfer. Methods Enzymol. 246, 300-334
-
(1995)
Methods Enzymol
, vol.246
, pp. 300-334
-
-
Selvin, P.R.1
-
26
-
-
0026687952
-
Fluorescence resonance energy transfer and nucleic acids
-
Clegg, R. M. (1992) Fluorescence resonance energy transfer and nucleic acids. Methods Enzymol. 211, 353-388
-
(1992)
Methods Enzymol
, vol.211
, pp. 353-388
-
-
Clegg, R.M.1
-
27
-
-
77954641162
-
Accurate single molecule FRET studies using multiparameter fluorescence detection
-
Sisamakis, E., Valeri, A., Kalinin, S., Rothwell, P. J., and Seidel, C. A. (2010) Accurate single molecule FRET studies using multiparameter fluorescence detection. Methods Enzymol. 475, 455-514
-
(2010)
Methods Enzymol
, vol.475
, pp. 455-514
-
-
Sisamakis, E.1
Valeri, A.2
Kalinin, S.3
Rothwell, P.J.4
Seidel, C.A.5
-
28
-
-
0037452580
-
Multiparameter single molecule fluorescence spectroscopy reveals heterogeneity of HIV-1 reverse transcriptase:primer/template complexes
-
Rothwell, P. J., Berger, S., Kensch, O., Felekyan, S., Antonik, M., Wöhrl, B. M., Restle, T., Goody, R. S., and Seidel, C. A. (2003) Multiparameter single molecule fluorescence spectroscopy reveals heterogeneity of HIV-1 reverse transcriptase:primer/template complexes. Proc. Natl. Acad. Sci. U.S.A. 100, 1655-1660
-
(2003)
Proc. Natl. Acad. Sci. U.S.A.
, vol.100
, pp. 1655-1660
-
-
Rothwell, P.J.1
Berger, S.2
Kensch, O.3
Felekyan, S.4
Antonik, M.5
Wöhrl, B.M.6
Restle, T.7
Goody, R.S.8
Seidel, C.A.9
-
29
-
-
0035853637
-
Data registration and selective single molecule analysis using multiparameter fluorescence detection
-
Eggeling, C., Berger, S., Brand, L., Fries, J. R., Schaffer, J., Volkmer, A., and Seidel, C. A. (2001) Data registration and selective single molecule analysis using multiparameter fluorescence detection. J. Biotechnol. 86, 163-180
-
(2001)
J. Biotechnol
, vol.86
, pp. 163-180
-
-
Eggeling, C.1
Berger, S.2
Brand, L.3
Fries, J.R.4
Schaffer, J.5
Volkmer, A.6
Seidel, C.A.7
-
31
-
-
33646377416
-
Separating structural heterogeneities from stochastic variations in fluorescence resonance energy transfer distributions via photon distribution analysis
-
Antonik, M., Felekyan, S., Gaiduk, A., and Seidel, C. A. (2006) Separating structural heterogeneities from stochastic variations in fluorescence resonance energy transfer distributions via photon distribution analysis. J. Phys. Chem. B 110, 6970-6978
-
(2006)
J. Phys. Chem. B
, vol.110
, pp. 6970-6978
-
-
Antonik, M.1
Felekyan, S.2
Gaiduk, A.3
Seidel, C.A.4
-
32
-
-
34548591465
-
Probability distribution analysis of single molecule fluorescence anisotropy and resonance energy transfer
-
Kalinin, S., Felekyan, S., Antonik, M., and Seidel, C. A. (2007) Probability distribution analysis of single molecule fluorescence anisotropy and resonance energy transfer. J. Phys. Chem. B 111, 10253-10262
-
(2007)
J. Phys. Chem. B
, vol.111
, pp. 10253-10262
-
-
Kalinin, S.1
Felekyan, S.2
Antonik, M.3
Seidel, C.A.4
-
33
-
-
77952208559
-
On the origin of broadening of single molecule FRET efficiency distributions beyond shot noise limits
-
Kalinin, S., Sisamakis, E., Magennis, S. W., Felekyan, S., and Seidel, C. A. (2010) On the origin of broadening of single molecule FRET efficiency distributions beyond shot noise limits. J. Phys. Chem. B 114, 6197-6206
-
(2010)
J. Phys. Chem. B
, vol.114
, pp. 6197-6206
-
-
Kalinin, S.1
Sisamakis, E.2
Magennis, S.W.3
Felekyan, S.4
Seidel, C.A.5
-
34
-
-
33751204491
-
Determination of the fraction and stoichiometry of femtomolar levels of biomolecular complexes in an excess of monomer using single molecule, two-color coincidence detection
-
Orte, A., Clarke, R., Balasubramanian, S., and Klenerman, D. (2006) Determination of the fraction and stoichiometry of femtomolar levels of biomolecular complexes in an excess of monomer using single molecule, two-color coincidence detection. Anal. Chem. 78, 7707-7715
-
(2006)
Anal. Chem
, vol.78
, pp. 7707-7715
-
-
Orte, A.1
Clarke, R.2
Balasubramanian, S.3
Klenerman, D.4
-
35
-
-
84859010947
-
Filtered FCS: Species auto-and cross-correlation functions highlight binding and dynamics in biomolecules
-
Felekyan, S., Kalinin, S., Sanabria, H., Valeri, A., and Seidel, C. A. (2012) Filtered FCS: Species auto-and cross-correlation functions highlight binding and dynamics in biomolecules. Chem Phys Chem. 13, 1036-1053
-
(2012)
Chem Phys Chem
, vol.13
, pp. 1036-1053
-
-
Felekyan, S.1
Kalinin, S.2
Sanabria, H.3
Valeri, A.4
Seidel, C.A.5
-
36
-
-
33645678319
-
Analysis of photobleaching in single molecule multicolor excitation and Forster resonance energy transfer measurement
-
Eggeling, C., Widengren, J., Brand, L., Schaffer, J., Felekyan, S., and Seidel, C. A. (2006) Analysis of photobleaching in single molecule multicolor excitation and Forster resonance energy transfer measurement. J. Phys. Chem. A 110, 2979-2995
-
(2006)
J. Phys. Chem. A
, vol.110
, pp. 2979-2995
-
-
Eggeling, C.1
Widengren, J.2
Brand, L.3
Schaffer, J.4
Felekyan, S.5
Seidel, C.A.6
-
37
-
-
77951562094
-
A comparative study of multivariate and univariate hidden Markov modelings in time-binned single molecule FRET data analysis
-
Liu, Y., Park, J., Dahmen, K. A., Chemla, Y. R., and Ha, T. (2010) A comparative study of multivariate and univariate hidden Markov modelings in time-binned single molecule FRET data analysis. J. Phys. Chem. B 114, 5386-5403
-
(2010)
J. Phys. Chem. B
, vol.114
, pp. 5386-5403
-
-
Liu, Y.1
Park, J.2
Dahmen, K.A.3
Chemla, Y.R.4
Ha, T.5
-
38
-
-
33746747438
-
Analysis of single molecule FRET trajectories using hidden Markov modeling
-
McKinney, S. A., Joo, C., and Ha, T. (2006) Analysis of single molecule FRET trajectories using hidden Markov modeling. Biophys. J. 91, 1941-1951
-
(2006)
Biophys. J
, vol.91
, pp. 1941-1951
-
-
McKinney, S.A.1
Joo, C.2
Ha, T.3
-
39
-
-
84870852782
-
A toolkit and benchmark study for FRET-restrained high precision structural modeling
-
Kalinin, S., Peulen, T., Sindbert, S., Rothwell, P. J., Berger, S., Restle, T., Goody, R. S., Gohlke, H., and Seidel, C. A. (2012) A toolkit and benchmark study for FRET-restrained high precision structural modeling. Nat. Methods 9, 1218-1225
-
(2012)
Nat. Methods
, vol.9
, pp. 1218-1225
-
-
Kalinin, S.1
Peulen, T.2
Sindbert, S.3
Rothwell, P.J.4
Berger, S.5
Restle, T.6
Goody, R.S.7
Gohlke, H.8
Seidel, C.A.9
-
40
-
-
56149121056
-
A nano-positioning system for macromolecular structural analysis
-
Muschielok, A., Andrecka, J., Jawhari, A., Brückner, F., Cramer, P., and Michaelis, J. (2008) A nano-positioning system for macromolecular structural analysis. Nat. Methods 5, 965-971
-
(2008)
Nat. Methods
, vol.5
, pp. 965-971
-
-
Muschielok, A.1
Andrecka, J.2
Jawhari, A.3
Brückner, F.4
Cramer, P.5
Michaelis, J.6
-
41
-
-
79952255056
-
Accurate distance determination of nucleic acids via Förster resonance energy transfer: Implications of dye linker length and rigidity
-
Sindbert, S., Kalinin, S., Nguyen, H., Kienzler, A., Clima, L., Bannwarth, W., Appel, B., Müller, S., and Seidel, C. A. (2011) Accurate distance determination of nucleic acids via Förster resonance energy transfer: implications of dye linker length and rigidity. J. Am. Chem. Soc. 133, 2463-2480
-
(2011)
J. Am. Chem. Soc
, vol.133
, pp. 2463-2480
-
-
Sindbert, S.1
Kalinin, S.2
Nguyen, H.3
Kienzler, A.4
Clima, L.5
Bannwarth, W.6
Appel, B.7
Müller, S.8
Seidel, C.A.9
-
42
-
-
0017795758
-
Fluorescence energy-transfer as a spectroscopic ruler
-
Stryer, L. (1978) Fluorescence energy-transfer as a spectroscopic ruler. Annu. Rev. Biochem. 47, 819-846
-
(1978)
Annu. Rev. Biochem
, vol.47
, pp. 819-846
-
-
Stryer, L.1
-
43
-
-
0036177565
-
Squared: From nuisance to new sense
-
van der Meer, B. W. (2002) squared: from nuisance to new sense. J. Biotechnol. 82, 181-196
-
(2002)
J. Biotechnol
, vol.82
, pp. 181-196
-
-
Van Der Meer, B.W.1
-
44
-
-
50249178162
-
Characterizing multiple molecular states in single molecule multiparameter fluorescence detection by probability distribution analysis
-
Kalinin, S., Felekyan, S., Valeri, A., and Seidel, C. A. (2008) Characterizing multiple molecular states in single molecule multiparameter fluorescence detection by probability distribution analysis. J. Phys. Chem. B 112, 8361-8374
-
(2008)
J. Phys. Chem. B
, vol.112
, pp. 8361-8374
-
-
Kalinin, S.1
Felekyan, S.2
Valeri, A.3
Seidel, C.A.4
-
45
-
-
70349334708
-
Nucleosome disassembly intermediates characterized by single molecule FRET
-
Gansen, A., Valeri, A., Hauger, F., Felekyan, S., Kalinin, S., Tóth, K., Langowski, J., and Seidel, C. A. (2009) Nucleosome disassembly intermediates characterized by single molecule FRET. Proc. Natl. Acad. Sci. U.S.A. 106, 15308-15313
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 15308-15313
-
-
Gansen, A.1
Valeri, A.2
Hauger, F.3
Felekyan, S.4
Kalinin, S.5
Tóth, K.6
Langowski, J.7
Seidel, C.A.8
-
46
-
-
44449103347
-
-
1st Ed., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Selvin, P. R., and Ha, T. (eds) (2008) Single molecule Techniques: A Laboratory Manual, 1st Ed., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
(2008)
Single Molecule Techniques: A Laboratory Manual
-
-
Selvin, P.R.1
Ha, T.2
-
47
-
-
23744433971
-
Surfaces and orientations: Much to FRET about?
-
Rasnik, I., McKinney, S. A., and Ha, T. (2005) Surfaces and orientations: Much to FRET about? Acc. Chem. Res. 38, 542-548
-
(2005)
Acc. Chem. Res
, vol.38
, pp. 542-548
-
-
Rasnik, I.1
McKinney, S.A.2
Ha, T.3
-
48
-
-
0035819204
-
Immobilization in surface-tethered lipid vesicles as a new tool for single biomolecule spectroscopy
-
Boukobza, E., Sonnenfeld, A., and Haran, G. (2001) Immobilization in surface-tethered lipid vesicles as a new tool for single biomolecule spectroscopy. J. Phys. Chem. B 105, 12165-12170
-
(2001)
J. Phys. Chem. B
, vol.105
, pp. 12165-12170
-
-
Boukobza, E.1
Sonnenfeld, A.2
Haran, G.3
-
49
-
-
0001594854
-
Quantitative identification of different single molecules by selective timeresolved confocal fluorescence spectroscopy
-
Fries, J. R., Brand, L., Eggeling, C., Kollner, M., and Seidel, C. A. (1998) Quantitative identification of different single molecules by selective timeresolved confocal fluorescence spectroscopy. J. Phys. Chem. A 102, 6601-6613
-
(1998)
J. Phys. Chem. A
, vol.102
, pp. 6601-6613
-
-
Fries, J.R.1
Brand, L.2
Eggeling, C.3
Kollner, M.4
Seidel, C.A.5
-
50
-
-
84863826327
-
Single molecule Förster resonance energy transfer reveals an innate fidelity checkpoint in DNA polymerase i
-
Berezhna, S. Y., Gill, J. P., Lamichhane, R., and Millar, D. P. (2012) Single molecule Förster resonance energy transfer reveals an innate fidelity checkpoint in DNA polymerase I. J. Am. Chem. Soc. 134, 11261-11268
-
(2012)
J. Am. Chem. Soc
, vol.134
, pp. 11261-11268
-
-
Berezhna, S.Y.1
Gill, J.P.2
Lamichhane, R.3
Millar, D.P.4
-
51
-
-
84858314382
-
KlenTaq DNA polymerase adopts unique recognition states when encountering matched, mismatched, and abasic template sites: An NMR study
-
Holzberger, B., Pszolla, M. G., Marx, A., and Möller, H. M. (2012) KlenTaq DNA polymerase adopts unique recognition states when encountering matched, mismatched, and abasic template sites: An NMR study. Chem-Bio Chem. 13, 635-639
-
(2012)
Chem-Bio Chem
, vol.13
, pp. 635-639
-
-
Holzberger, B.1
Pszolla, M.G.2
Marx, A.3
Andmöller, H.M.4
-
52
-
-
79952759975
-
705, of DNA polymerase i (Klenow fragment) during the prechemistry conformational transitions
-
705, of DNA polymerase I (Klenow fragment) during the prechemistry conformational transitions. J. Biol. Chem. 286, 3755-3766
-
(2011)
J. Biol. Chem
, vol.286
, pp. 3755-3766
-
-
Bermek, O.1
Grindley, N.D.2
Joyce, C.M.3
-
53
-
-
33747462891
-
A new paradigm for DNA polymerase specificity
-
Tsai, Y.-C., and Johnson, K. A. (2006) A new paradigm for DNA polymerase specificity. Biochemistry 45, 9675-9687
-
(2006)
Biochemistry
, vol.45
, pp. 9675-9687
-
-
Tsai, Y.-C.1
Johnson, K.A.2
-
54
-
-
55549109430
-
Role of induced fit in enzyme specificity: A molecular forward/reverse switch
-
Johnson, K. A. (2008) Role of induced fit in enzyme specificity: A molecular forward/reverse switch. J. Biol. Chem. 283, 26297-26301
-
(2008)
J. Biol. Chem
, vol.283
, pp. 26297-26301
-
-
Johnson, K.A.1
-
55
-
-
82455171948
-
Induced fit or conformational selection? The role of the semi-closed state in the maltose binding protein
-
Bucher, D., Grant, B. J., and McCammon, J. A. (2011) Induced fit or conformational selection? The role of the semi-closed state in the maltose binding protein. Biochemistry 50, 10530-10539
-
(2011)
Biochemistry
, vol.50
, pp. 10530-10539
-
-
Bucher, D.1
Grant, B.J.2
McCammon, J.A.3
-
56
-
-
79958136745
-
Arole for both conformational selection and induced fit in ligand binding by the LAO protein
-
Silva, D.-A., Bowman, G. R., Sosa-Peinado, A., and Huang, X. (2011)Arole for both conformational selection and induced fit in ligand binding by the LAO protein. PLoS Comput. Biol. 7, e1002054
-
(2011)
PLoS Comput. Biol
, vol.7
-
-
Silva, D.-A.1
Bowman, G.R.2
Sosa-Peinado, A.3
Huang, X.4
-
57
-
-
84864462749
-
Conformational selection or induced fit? A critical appraisal of the kinetic mechanism
-
Vogt, A. D., and Di Cera, E. (2012) Conformational selection or induced fit? A critical appraisal of the kinetic mechanism. Biochemistry 51, 5894-5902
-
(2012)
Biochemistry
, vol.51
, pp. 5894-5902
-
-
Vogt, A.D.1
Di Cera, E.2
-
58
-
-
80053539881
-
Conformational selection or in duced fit? 50 years of debate resolved
-
Changeux, J.-P., and Edelstein, S. (2011) Conformational selection or in duced fit? 50 years of debate resolved. F1000 Biol. Rep. 3, 19
-
(2011)
F1000 Biol. Rep
, vol.3
, pp. 19
-
-
Changeux, J.-P.1
Edelstein, S.2
-
59
-
-
77957754309
-
Enzyme dynamics point to stepwise conformational selection in catalysis
-
Ma, B., and Nussinov, R. (2010) Enzyme dynamics point to stepwise conformational selection in catalysis. Curr. Opin. Chem. Biol. 14, 652-659
-
(2010)
Curr. Opin. Chem. Biol
, vol.14
, pp. 652-659
-
-
Ma, B.1
Nussinov, R.2
-
60
-
-
0344304434
-
The tandem Src homology 2 domain of the Syk kinase: A molecular device that adapts to interphosphotyrosine distances
-
Kumaran, S., Grucza, R. A., and Waksman, G. (2003) The tandem Src homology 2 domain of the Syk kinase: A molecular device that adapts to interphosphotyrosine distances. Proc. Natl. Acad. Sci. U.S.A. 100, 14828-14833
-
(2003)
Proc. Natl. Acad. Sci. U.S.A.
, vol.100
, pp. 14828-14833
-
-
Kumaran, S.1
Grucza, R.A.2
Waksman, G.3
-
61
-
-
36749083505
-
Illuminating the mechanistic roles of enzyme conformational dynamics
-
Hanson, J. A., Duderstadt, K., Watkins, L. P., Bhattacharyya, S., Brokaw, J., Chu, J.-W., and Yang, H. (2007) Illuminating the mechanistic roles of enzyme conformational dynamics. Proc. Natl. Acad. Sci. U.S.A. 104, 18055-18060
-
(2007)
Proc. Natl. Acad. Sci. U.S.A.
, vol.104
, pp. 18055-18060
-
-
Hanson, J.A.1
Duderstadt, K.2
Watkins, L.P.3
Bhattacharyya, S.4
Brokaw, J.5
Chu, J.-W.6
Yang, H.7
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