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Volumn 7, Issue 5, 1998, Pages 1116-1123

Crystal structures of the Klenow fragment of Thermus aquaticus DNA polymerase I complexed with deoxyribonucleoside triphosphates

Author keywords

Crystal structure; DNA polymerase; dNTP; Klentaq1

Indexed keywords

ARGININE; DEOXYRIBONUCLEOSIDE TRIPHOSPHATE; DNA DIRECTED DNA POLYMERASE BETA; GLUTAMINE; HISTIDINE; LYSINE; PRIMER DNA;

EID: 0031861823     PISSN: 09618368     EISSN: None     Source Type: Journal    
DOI: 10.1002/pro.5560070505     Document Type: Article
Times cited : (96)

References (28)
  • 1
    • 0028947982 scopus 로고
    • Deoxynucleoside triphosphate and pyrophosphate binding sites in the catalytically competent ternary complex for the polymerase reaction catalyzed by DNA polymerase I (Klenow fragment)
    • Astatke M, Grindley NDF, Joyce CM. 1995. Deoxynucleoside triphosphate and pyrophosphate binding sites in the catalytically competent ternary complex for the polymerase reaction catalyzed by DNA polymerase I (Klenow fragment). J Biol Chem 270:1945-1954.
    • (1995) J Biol Chem , vol.270 , pp. 1945-1954
    • Astatke, M.1    Grindley, N.D.F.2    Joyce, C.M.3
  • 2
    • 0026534432 scopus 로고
    • The fidelity of Taq polymerase catalyzing PCR is improved by an N-terminal deletion
    • Barnes WM. 1992. The fidelity of Taq polymerase catalyzing PCR is improved by an N-terminal deletion. Gene 112:29-35.
    • (1992) Gene , vol.112 , pp. 29-35
    • Barnes, W.M.1
  • 3
    • 0028211009 scopus 로고
    • PCR amplification of up to 35 kb DNA with high fidelity and high yield from λ templates
    • Barnes WM. 1994. PCR amplification of up to 35 kb DNA with high fidelity and high yield from λ templates. Proc Natl Acad Sci USA 91:2216-2220.
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 2216-2220
    • Barnes, W.M.1
  • 4
    • 0027730441 scopus 로고
    • Crystal structure of the klenow fragment of DNA polymerase I complexed with the deoxynucleoside triphosphate and pyrophosphate
    • Beese LS, Friedman JM, Steitz TA. 1993. Crystal structure of the klenow fragment of DNA polymerase I complexed with the deoxynucleoside triphosphate and pyrophosphate. Biochemistry 32:14095-14101.
    • (1993) Biochemistry , vol.32 , pp. 14095-14101
    • Beese, L.S.1    Friedman, J.M.2    Steitz, T.A.3
  • 6
    • 0025357317 scopus 로고
    • Interaction of Escherichia coli DNA polymerase I with azidoDNA and fluorescent probes: Identification of protein-DNA contacts
    • Catalano CE, Allen DJ, Benkovic SJ. 1990. Interaction of Escherichia coli DNA polymerase I with azidoDNA and fluorescent probes: Identification of protein-DNA contacts. Biochemistry 29:3612-3621.
    • (1990) Biochemistry , vol.29 , pp. 3612-3621
    • Catalano, C.E.1    Allen, D.J.2    Benkovic, S.J.3
  • 7
    • 0028261194 scopus 로고
    • Effective amplification of long targets from cloned inserts and human genomic DNA
    • Cheng S, Fockler C, Barnes WM, Higuchi, R. 1994. Effective amplification of long targets from cloned inserts and human genomic DNA. Proc Natl Acad Sci USA 97:5695-5699.
    • (1994) Proc Natl Acad Sci USA , vol.97 , pp. 5695-5699
    • Cheng, S.1    Fockler, C.2    Barnes, W.M.3    Higuchi, R.4
  • 9
    • 0030592095 scopus 로고    scopus 로고
    • Structure of Taq polymerase with DNA at the polymerase active site
    • Eom SH, Wang J, Steitz TA. 1996. Structure of Taq polymerase with DNA at the polymerase active site. Nature 382:278-281.
    • (1996) Nature , vol.382 , pp. 278-281
    • Eom, S.H.1    Wang, J.2    Steitz, T.A.3
  • 10
    • 0022293584 scopus 로고
    • Multiwire area X-ray diffractometer
    • Hamlin R. 1985. Multiwire area X-ray diffractometer. Methods Enzymol 114:416-452.
    • (1985) Methods Enzymol , vol.114 , pp. 416-452
    • Hamlin, R.1
  • 11
    • 0022326269 scopus 로고
    • Software for a diffractometer with multiwire area detector
    • Howard AJ, Nielsen C, Xuong NH. 1985. Software for a diffractometer with multiwire area detector. Methods Enzymol 114:452-412.
    • (1985) Methods Enzymol , vol.114 , pp. 452-1412
    • Howard, A.J.1    Nielsen, C.2    Xuong, N.H.3
  • 12
    • 0022701772 scopus 로고
    • Using known substructures in protein model building and crystallography
    • Jones TA, Thirup S. 1986. Using known substructures in protein model building and crystallography. EMBO J 5:819-822.
    • (1986) EMBO J , vol.5 , pp. 819-822
    • Jones, T.A.1    Thirup, S.2
  • 13
    • 84889120137 scopus 로고
    • Improved methods for building protein models in electron density maps and the location of errors in these models
    • Jones TA, Zou JY, Cowan SW, Kjeldgaard M. 1991. Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr A47:110-119.
    • (1991) Acta Crystallogr , vol.A47 , pp. 110-119
    • Jones, T.A.1    Zou, J.Y.2    Cowan, S.W.3    Kjeldgaard, M.4
  • 15
    • 0028206048 scopus 로고
    • Function and structure relationships in DNA polymerases
    • Joyce CM, Steitz TA. 1994. Function and structure relationships in DNA polymerases. Ann Rev Biochem 63:111-822.
    • (1994) Ann Rev Biochem , vol.63 , pp. 111-822
    • Joyce, C.M.1    Steitz, T.A.2
  • 18
    • 0029056926 scopus 로고
    • Crystal structure of the large fragment of Thermus aquaticus DNA polymerase I at 2.5 Å resolution: Structural basis for thermostability
    • Korolev S, Nayal M, Barnes W, Di Cera E, Waksman G. 1995. Crystal structure of the large fragment of Thermus aquaticus DNA polymerase I at 2.5 Å resolution: Structural basis for thermostability. Proc Natl Acad Sci USA 92:9264-9268.
    • (1995) Proc Natl Acad Sci USA , vol.92 , pp. 9264-9268
    • Korolev, S.1    Nayal, M.2    Barnes, W.3    Di Cera, E.4    Waksman, G.5
  • 19
    • 0026244229 scopus 로고
    • MOLSCRIPT: A program to reproduce both detailed and schematic plots of protein structure
    • Kraulis PJ. 1991. MOLSCRIPT: A program to reproduce both detailed and schematic plots of protein structure. J Appl Crystallogr 24:946-950.
    • (1991) J Appl Crystallogr , vol.24 , pp. 946-950
    • Kraulis, P.J.1
  • 20
    • 0027494112 scopus 로고
    • High-level expression, purification, and enzymatic characterization of full-length Thermus aquaticus DNA polymerase and a truncated form deficient in 5′ to 3′ exonuclease activity
    • Lawyer FC, Stoffel S, Saiki RK, Chang S-Y, Landre PA, Abramson RD, Gelfand DH. 1993. High-level expression, purification, and enzymatic characterization of full-length Thermus aquaticus DNA polymerase and a truncated form deficient in 5′ to 3′ exonuclease activity. PCR Methods and Applications 2:275-287.
    • (1993) PCR Methods and Applications , vol.2 , pp. 275-287
    • Lawyer, F.C.1    Stoffel, S.2    Saiki, R.K.3    Chang, S.-Y.4    Landre, P.A.5    Abramson, R.D.6    Gelfand, D.H.7
  • 21
    • 0028057108 scopus 로고
    • Raster3D Version 2.0: A program for photorealistic molecular graphics
    • Merritt EA, Murphy MEP. 1994. Raster3D Version 2.0: A program for photorealistic molecular graphics. Acta Crystallogr D50:869-873.
    • (1994) Acta Crystallogr , vol.D50 , pp. 869-873
    • Merritt, E.A.1    Murphy, M.E.P.2
  • 22
    • 0021984004 scopus 로고
    • Structure of a large fragment of Escherichia coli DNA polymerase I complexed with dTMP
    • Ollis DL, Brick P, Hamlin R, Xuong NG, Steitz TA. 1985. Structure of a large fragment of Escherichia coli DNA polymerase I complexed with dTMP. Nature 313:162-166.
    • (1985) Nature , vol.313 , pp. 162-166
    • Ollis, D.L.1    Brick, P.2    Hamlin, R.3    Xuong, N.G.4    Steitz, T.A.5
  • 24
    • 0027298787 scopus 로고
    • Site directed mutagenesis of DNA polymerase 1 (Klenow) from Escherichia coli. the significance of Arg682 in catalysis
    • Pandey VN, Kaushik N, Sanzgiri RP, Patil MS, Modak MJ, Barik S. 1993. Site directed mutagenesis of DNA polymerase 1 (Klenow) from Escherichia coli. The significance of Arg682 in catalysis. Eur J Biochem 214:59-65.
    • (1993) Eur J Biochem , vol.214 , pp. 59-65
    • Pandey, V.N.1    Kaushik, N.2    Sanzgiri, R.P.3    Patil, M.S.4    Modak, M.J.5    Barik, S.6
  • 25
    • 0023900101 scopus 로고
    • Affinity labeling of Escherichia coli DNA polymerase I by 5′-fluorosulfonylbenzoyladenosine. Identification of the domain essential for polymerization and arg-682 as the site of reactivity
    • Pandey VN, Modak MJ. 1988. Affinity labeling of Escherichia coli DNA polymerase I by 5′-fluorosulfonylbenzoyladenosine. Identification of the domain essential for polymerization and arg-682 as the site of reactivity. J Biol Chem 263:6068-6073.
    • (1988) J Biol Chem , vol.263 , pp. 6068-6073
    • Pandey, V.N.1    Modak, M.J.2
  • 26
    • 0029845979 scopus 로고    scopus 로고
    • Random mutagenesis of Thermus aquaticus DNA polymerase I: Concordance of immutable sites in vivo with the crystal structure
    • Suzuki M, Baskin D, Hood L, Loch LA. 1996. Random mutagenesis of Thermus aquaticus DNA polymerase I: Concordance of immutable sites in vivo with the crystal structure. Proc Natl Acad Sci USA 93:9670-9675.
    • (1996) Proc Natl Acad Sci USA , vol.93 , pp. 9670-9675
    • Suzuki, M.1    Baskin, D.2    Hood, L.3    Loch, L.A.4
  • 27
    • 0029023051 scopus 로고
    • A single residue in DNA polymerase of the Escherichia coli DNA polymerase I family is critical for distinguishing between deoxy- and dideoxyribonucleotides
    • Tabor S, Richardson CC. 1995. A single residue in DNA polymerase of the Escherichia coli DNA polymerase I family is critical for distinguishing between deoxy- and dideoxyribonucleotides. Proc Natl Acad Sci USA 92:6339-6343.
    • (1995) Proc Natl Acad Sci USA , vol.92 , pp. 6339-6343
    • Tabor, S.1    Richardson, C.C.2
  • 28
    • 0017343443 scopus 로고
    • Affinity labeling of rabbit muscle pyruvate kinase by 5′-p-fluorosulfonylbenzoyladenosine
    • Wyatt JL, Colman RF. 1977. Affinity labeling of rabbit muscle pyruvate kinase by 5′-p-fluorosulfonylbenzoyladenosine. Biochemistry 16:1333-1342.
    • (1977) Biochemistry , vol.16 , pp. 1333-1342
    • Wyatt, J.L.1    Colman, R.F.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.