SCOPUS 정보 검색 플랫폼

Proceedings of the National Academy of Sciences of the United States of America

Volumn 104, Issue 46, 2007, Pages 18055-18060

Illuminating the mechanistic roles of enzyme conformational dynamics

(7) Hanson, Jeffrey A a Duderstadt, Karl a Watkins, Lucas P a,d Bhattacharyya, Sucharita a,e Brokaw, Jason a Chu, Jhih Wei b Yang, Haw a,c

a UNIVERSITY OF CALIFORNIA (United States)

b University of California (United States)

c LAWRENCE BERKELEY NATIONAL LABORATORY (United States)

d HARVARD LAW SCHOOL (United States)

e UNIVERSITY OF CALIFORNIA (United States)

Author keywords

Adenylate kinase; Conformational equilibrium; Rate limiting step; Single molecule FRET

Indexed keywords

ADENYLATE KINASE;

ARTICLE; CATALYSIS; ENZYME CONFORMATION; ENZYME LOCALIZATION; ENZYME MECHANISM; FLUORESCENCE RESONANCE ENERGY TRANSFER; ILLUMINATION; LIGAND BINDING; MOLECULAR DYNAMICS; PRIORITY JOURNAL; PROTEIN DOMAIN; X RAY CRYSTALLOGRAPHY;

ADENYLATE KINASE; BINDING SITES; CATALYSIS; CRYSTALLOGRAPHY, X-RAY; FLUORESCENCE RESONANCE ENERGY TRANSFER; KINETICS; PROTEIN CONFORMATION;

EID: 36749083505 PISSN: 00278424 EISSN: 10916490 Source Type: Journal
DOI: 10.1073/pnas.0708600104 Document Type: Article

Times cited : (261)

References (48)

1
- 0026320866
- Frauenfelder H, Sligar SG, Wolynes PG (1991) Science 254:1598-1603.
- (1991) Science , vol.254 , pp. 1598-1603
- Frauenfelder, H.¹ Sligar, S.G.² Wolynes, P.G.³

2
- 33746325760
- Hammes-Schiffer S, Benkovic SJ (2006) Annu Rev Biochem 75:519-541.
- (2006) Annu Rev Biochem , vol.75 , pp. 519-541
- Hammes-Schiffer, S.¹ Benkovic, S.J.²

3
- 6344219895
- Gunasekaran K, Ma BY, Nussinov R (2004) Proteins 57:433-443.
- (2004) Proteins , vol.57 , pp. 433-443
- Gunasekaran, K.¹ Ma, B.Y.² Nussinov, R.³

4
- 33745041480
- Erzberger JP, Berger JM (2006) Annu Rev Biophys Biomol Struct 35:93-114.
- (2006) Annu Rev Biophys Biomol Struct , vol.35 , pp. 93-114
- Erzberger, J.P.¹ Berger, J.M.²

5
- 33748619206
- Boehr DD, Dyson HJ, Wright PE (2006) Chem Rev 106:3055-3079.
- (2006) Chem Rev , vol.106 , pp. 3055-3079
- Boehr, D.D.¹ Dyson, H.J.² Wright, P.E.³

6
- 0036725277
- Karplus M, McCammon JA (2002) Nat Struct Biol 9:646-652.
- (2002) Nat Struct Biol , vol.9 , pp. 646-652
- Karplus, M.¹ McCammon, J.A.²

7
- 0035967901
- Rozovsky S, McDermott AE (2001) J Mol Biol 310:259-270.
- (2001) J Mol Biol , vol.310 , pp. 259-270
- Rozovsky, S.¹ McDermott, A.E.²

8
- 17044401342
- McElheny D, Schnell JR, Lansing JC, Dyson HJ, Wright PE (2005) Proc Natl Acad Sci USA 102:5032-5037.
- (2005) Proc Natl Acad Sci USA , vol.102 , pp. 5032-5037
- McElheny, D.¹ Schnell, J.R.² Lansing, J.C.³ Dyson, H.J.⁴ Wright, P.E.⁵

9
- 21244440196
- Beach H, Cole R, Gill ML, Loria JP (2005) J Am Chem Soc 127:9167-9176.
- (2005) J Am Chem Soc , vol.127 , pp. 9167-9176
- Beach, H.¹ Cole, R.² Gill, M.L.³ Loria, J.P.⁴

10
- 27744499156
- Eisenmesser EZ, Millet O, Labeikovsky W, Korzhnev DM, Wolf-Watz M, Bosco DA, Skalicky JJ, Kay LE, Kern D (2005) Nature 438:117-121.
- (2005) Nature , vol.438 , pp. 117-121
- Eisenmesser, E.Z.¹ Millet, O.² Labeikovsky, W.³ Korzhnev, D.M.⁴ Wolf-Watz, M.⁵ Bosco, D.A.⁶ Skalicky, J.J.⁷ Kay, L.E.⁸ Kern, D.⁹

11
- 0014429881
- Rhoads DG, Lowenstein JM (1968) J Biol Chem 243:3963-3972.
- (1968) J Biol Chem , vol.243 , pp. 3963-3972
- Rhoads, D.G.¹ Lowenstein, J.M.²

12
- 0025128098
- Reinstein J, Vetter IR, Schlichting I, Rosch P, Wittinghofer A, Goody RS (1990) Biochemistry 29:7440-7450.
- (1990) Biochemistry , vol.29 , pp. 7440-7450
- Reinstein, J.¹ Vetter, I.R.² Schlichting, I.³ Rosch, P.⁴ Wittinghofer, A.⁵ Goody, R.S.⁶

13
- 0028338283
- Berry MB, Meador B, Bilderback T, Liang P, Glaser M, Phillips GN (1994) Proteins 19:183-198.
- (1994) Proteins , vol.19 , pp. 183-198
- Berry, M.B.¹ Meador, B.² Bilderback, T.³ Liang, P.⁴ Glaser, M.⁵ Phillips, G.N.⁶

14
- 0029644728
- Vonrhein C, Schlauderer GJ, Schulz GE (1995) Structure (London) 3:483-490.
- (1995) Structure (London) , vol.3 , pp. 483-490
- Vonrhein, C.¹ Schlauderer, G.J.² Schulz, G.E.³

15
- 0029644168
- Muller CW, Schlauderer GJ, Reinstein J, Schulz GE (1996) Structure (London) 4:147-156.
- (1996) Structure (London) , vol.4 , pp. 147-156
- Muller, C.W.¹ Schlauderer, G.J.² Reinstein, J.³ Schulz, G.E.⁴

16
- 0029871765
- Bilderback T, Fulmer T, Mantulin WW, Glaser M (1996) Biochemistry 35:6100-6106.
- (1996) Biochemistry , vol.35 , pp. 6100-6106
- Bilderback, T.¹ Fulmer, T.² Mantulin, W.W.³ Glaser, M.⁴

17
- 0029949248
- Sinev MA, Sineva EV, Ittah V, Haas E (1996) Biochemistry 35:6425-6437.
- (1996) Biochemistry , vol.35 , pp. 6425-6437
- Sinev, M.A.¹ Sineva, E.V.² Ittah, V.³ Haas, E.⁴

18
- 17644435744
- Yan HG, Tsai MD (1999) Adv Enzymol Relat Areas Mol Biol 73:103-134.
- (1999) Adv Enzymol Relat Areas Mol Biol , vol.73 , pp. 103-134
- Yan, H.G.¹ Tsai, M.D.²

19
- 4744343045
- Wolf-Watz M, Thai V, Henzler-Wildman K, Hadjipavlou G, Eisenmesser EZ, Kern D (2004) Nat Struct Biol 11:945-949.
- (2004) Nat Struct Biol , vol.11 , pp. 945-949
- Wolf-Watz, M.¹ Thai, V.² Henzler-Wildman, K.³ Hadjipavlou, G.⁴ Eisenmesser, E.Z.⁵ Kern, D.⁶

20
- 0029886930
- Elamrani S, Berry MB, Phillips GN, McCammon JA (1996) Proteins 25:79-88.
- (1996) Proteins , vol.25 , pp. 79-88
- Elamrani, S.¹ Berry, M.B.² Phillips, G.N.³ McCammon, J.A.⁴

21
- 0242268469
- Miyashita O, Onuchic JN, Wolynes PG (2003) Proc Natl Acad Sci USA 100:12570-12575.
- (2003) Proc Natl Acad Sci USA , vol.100 , pp. 12570-12575
- Miyashita, O.¹ Onuchic, J.N.² Wolynes, P.G.³

22
- 6344231648
- Temiz NA, Meirovitch E, Bahar I (2004) Proteins 57:468-480.
- (2004) Proteins , vol.57 , pp. 468-480
- Temiz, N.A.¹ Meirovitch, E.² Bahar, I.³

23
- 24644483073
- Maragakis P, Karplus M (2005) J Mol Biol 352:807-822.
- (2005) J Mol Biol , vol.352 , pp. 807-822
- Maragakis, P.¹ Karplus, M.²

24
- 33846050049
- Lou HF, Cukier RI (2006) J Phys Chem B 110:24121-24137.
- (2006) J Phys Chem B , vol.110 , pp. 24121-24137
- Lou, H.F.¹ Cukier, R.I.²

25
- 0016624901
- Jencks WP (1975) Adv Enzymol Relat Areas Mol Biol 43:219-410.
- (1975) Adv Enzymol Relat Areas Mol Biol , vol.43 , pp. 219-410
- Jencks, W.P.¹

26
- 0034674420
- Zhuang XW, Bartley LE, Babcock HP, Russell R, Ha TJ, Herschlag D, Chu S (2000) Science 288:2048-2051.
- (2000) Science , vol.288 , pp. 2048-2051
- Zhuang, X.W.¹ Bartley, L.E.² Babcock, H.P.³ Russell, R.⁴ Ha, T.J.⁵ Herschlag, D.⁶ Chu, S.⁷

27
- 0043009768
- Tan E, Wilson TJ, Nahas MK, Clegg RM, Lilley DMJ, Ha T (2003) Proc Natl Acad Sci USA 100:9308-9313.
- (2003) Proc Natl Acad Sci USA , vol.100 , pp. 9308-9313
- Tan, E.¹ Wilson, T.J.² Nahas, M.K.³ Clegg, R.M.⁴ Lilley, D.M.J.⁵ Ha, T.⁶

28
- 0037315675
- McKinney SA, Declais AC, Lilley DMJ, Ha T (2003) Nat Struct Biol 10:93-97.
- (2003) Nat Struct Biol , vol.10 , pp. 93-97
- McKinney, S.A.¹ Declais, A.C.² Lilley, D.M.J.³ Ha, T.⁴

29
- 0141993702
- Yang H, Luo GB, Karnchanaphanurach P, Louie TM, Rech I, Cova S, Xun LY, Xie XS (2003) Science 302:262-266.
- (2003) Science , vol.302 , pp. 262-266
- Yang, H.¹ Luo, G.B.² Karnchanaphanurach, P.³ Louie, T.M.⁴ Rech, I.⁵ Cova, S.⁶ Xun, L.Y.⁷ Xie, X.S.⁸

30
- 33646937406
- Michalet X, Weiss S, Jager M (2006) Chem Rev 106:1785-1813.
- (2006) Chem Rev , vol.106 , pp. 1785-1813
- Michalet, X.¹ Weiss, S.² Jager, M.³

31
- 2942642588
- Watkins LP, Yang H (2004) Biophys J 86:4015-4029.
- (2004) Biophys J , vol.86 , pp. 4015-4029
- Watkins, L.P.¹ Yang, H.²

32
- 33646416480
- Watkins LP, Chang H, Yang H (2006) J Phys Chem A 110:5191-5203.
- (2006) J Phys Chem A , vol.110 , pp. 5191-5203
- Watkins, L.P.¹ Chang, H.² Yang, H.³

33
- 0346407839
- Anderson PW (1954) J Phys Soc Jpn 9:316-339.
- (1954) J Phys Soc Jpn , vol.9 , pp. 316-339
- Anderson, P.W.¹

34
- 70349464599
- Kubo R (1954) J Phys Soc Jpn 9:935-944.
- (1954) J Phys Soc Jpn , vol.9 , pp. 935-944
- Kubo, R.¹

35
- 0032557299
- Geva E, Skinner JL (1998) Chem Phys Lett 288:225-229.
- (1998) Chem Phys Lett , vol.288 , pp. 225-229
- Geva, E.¹ Skinner, J.L.²

36
- 0000903148
- Brezhkovskii AM, Szabo A, Weiss GH (1999) J Chem Phys 110:9145-9150.
- (1999) J Chem Phys , vol.110 , pp. 9145-9150
- Brezhkovskii, A.M.¹ Szabo, A.² Weiss, G.H.³

37
- 0037566231
- Gopich IV, Szabo A (2003) J Phys Chem B 107:5058-5063.
- (2003) J Phys Chem B , vol.107 , pp. 5058-5063
- Gopich, I.V.¹ Szabo, A.²

38
- 33144487234
- Bae EY, Phillips GN (2006) Proc Natl Acad Sci USA 103:2132-2137.
- (2006) Proc Natl Acad Sci USA , vol.103 , pp. 2132-2137
- Bae, E.Y.¹ Phillips, G.N.²

39
- 0029000872
- Williams JC, Mcdermott AE (1995) Biochemistry 34:8309-8319.
- (1995) Biochemistry , vol.34 , pp. 8309-8319
- Williams, J.C.¹ Mcdermott, A.E.²

40
- 30144436102
- Berry MB, Bae EY, Bilderback TR, Glaser M, Phillips GN (2006) Proteins 62:555-556.
- (2006) Proteins , vol.62 , pp. 555-556
- Berry, M.B.¹ Bae, E.Y.² Bilderback, T.R.³ Glaser, M.⁴ Phillips, G.N.⁵

41
- 0029937408
- Fukami-Kobayashi K, Nosaka M, Nakazawa A, Go M (1996) FEBS Lett 385:214-220.
- (1996) FEBS Lett , vol.385 , pp. 214-220
- Fukami-Kobayashi, K.¹ Nosaka, M.² Nakazawa, A.³ Go, M.⁴

42
- 0025887633
- Tsai MD, Yan HG (1991) Biochemistry 30:6806-6818.
- (1991) Biochemistry , vol.30 , pp. 6806-6818
- Tsai, M.D.¹ Yan, H.G.²

43
- 0041876386
- Moerner WE, Fromm DP (2003) Rev Sci Inst 74:3597-3619.
- (2003) Rev Sci Inst , vol.74 , pp. 3597-3619
- Moerner, W.E.¹ Fromm, D.P.²

44
- 18744416938
- Lippitz M, Kulzer F, Orrit M (2005) ChemPhysChem 6:770-789.
- (2005) ChemPhysChem , vol.6 , pp. 770-789
- Lippitz, M.¹ Kulzer, F.² Orrit, M.³

45
- 12344282980
- Watkins LP, Yang H (2005) J Phys Chem B 109:617-628.
- (2005) J Phys Chem B , vol.109 , pp. 617-628
- Watkins, L.P.¹ Yang, H.²

46
- 0021100266
- Huss RJ, Glaser M (1983) J Biol Chem 258:13370-13376.
- (1983) J Biol Chem , vol.258 , pp. 13370-13376
- Huss, R.J.¹ Glaser, M.²

47
- 0018681639
- Huang CY (1979) Methods Enzymol 63:54-84.
- (1979) Methods Enzymol , vol.63 , pp. 54-84
- Huang, C.Y.¹

48
- 33644873452
- Flores S, Echols N, Milburn D, Hespenheide B, Keating K, Lu J, Wells S, Yu EZ, Thorpe M, Gerstein M (2006) Nucleic Acids Res 34:D296-D301.
- (2006) Nucleic Acids Res , vol.34
- Flores, S.¹ Echols, N.² Milburn, D.³ Hespenheide, B.⁴ Keating, K.⁵ Lu, J.⁶ Wells, S.⁷ Yu, E.Z.⁸ Thorpe, M.⁹ Gerstein, M.¹⁰

* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.