메뉴 건너뛰기




Volumn 17, Issue 1, 2011, Pages 54-63

Target RNA-directed tailing and trimming purifies the sorting of endo-siRNAs between the two Drosophila Argonaute proteins

Author keywords

Argonaute; MicroRNA; MiRNA; RNAi; Small RNA sorting

Indexed keywords

ARGONAUTE 1 PROTEIN; ARGONAUTE 2 PROTEIN; DROSOPHILA PROTEIN; MICRORNA; RNA; SINGLE STRANDED RNA; SMALL INTERFERING RNA; URIDINE;

EID: 78650468331     PISSN: 13558382     EISSN: 14699001     Source Type: Journal    
DOI: 10.1261/rna.2498411     Document Type: Article
Times cited : (51)

References (47)
  • 2
    • 0035905766 scopus 로고    scopus 로고
    • Role for a bidentate ribonuclease in the initiation step of RNA interference
    • Bernstein E, Caudy AA, Hammond SM, Hannon GJ. 2001. Role for a bidentate ribonuclease in the initiation step of RNA interference. Nature 409: 363-366.
    • (2001) Nature , vol.409 , pp. 363-366
    • Bernstein, E.1    Caudy, A.A.2    Hammond, S.M.3    Hannon, G.J.4
  • 5
    • 22744433240 scopus 로고    scopus 로고
    • Normal microRNA maturation and germ-line stem cell maintenance requires loquacious, a double-stranded RNA-binding domain protein
    • DOI 10.1371/journal.pbio.0030236, e236
    • Förstemann K, Tomari Y, Du T, Vagin VV, denli AM, Bratu DP, Klattenhoff C, Theurkauf WE, Zamore PD. 2005. Normal micro- RNA maturation and germ-line stem cell maintenance requires Loquacious, a double-stranded RNA-binding domain protein. PLoS Biol 3: e236. doi: 10.1371/journal.pbio. 0030236. (Pubitemid 41032187)
    • (2005) PLoS Biology , vol.3 , Issue.7 , pp. 1187-1201
    • Forstemann, K.1    Tomari, Y.2    Du, T.3    Vagin, V.V.4    Denli, A.M.5    Bratu, D.P.6    Klattenhoff, C.7    Theurkauf, W.E.8    Zamore, P.D.9
  • 6
    • 34447291764 scopus 로고    scopus 로고
    • Drosophila microRNAs are sorted into functionally distinct Argonaute complexes after production by Dicer-1
    • Förstemann K, Horwich MD, Wee L, Tomari Y, Zamore PD. 2007. Drosophila microRNAs are sorted into functionally distinct Argonaute complexes after production by Dicer-1. Cell 130: 287-297.
    • (2007) Cell , vol.130 , pp. 287-297
    • Förstemann, K.1    Horwich, M.D.2    Wee, L.3    Tomari, Y.4    Zamore, P.D.5
  • 7
    • 77953479619 scopus 로고    scopus 로고
    • Structural basis for 59- nucleotide base-specific recognition of guide RNA by human AGO2
    • Frank F, Sonenberg N, Nagar B. 2010. Structural basis for 59- nucleotide base-specific recognition of guide RNA by human AGO2. Nature 465: 818-822.
    • (2010) Nature , vol.465 , pp. 818-822
    • Frank, F.1    Sonenberg, N.2    Nagar, B.3
  • 8
    • 58449134534 scopus 로고    scopus 로고
    • Small silencing RNAs: An expanding universe
    • Ghildiyal M, Zamore PD. 2009. Small silencing RNAs: an expanding universe. Nat Rev Genet 10: 94-108.
    • (2009) Nat Rev Genet , vol.10 , pp. 94-108
    • Ghildiyal, M.1    Zamore, P.D.2
  • 10
    • 75649129754 scopus 로고    scopus 로고
    • Sorting of Drosophila small silencing RNAs partitions microRNA strands into the RNA interference pathway
    • Ghildiyal M, Xu J, Seitz H, Weng Z, Zamore PD. 2010. Sorting of Drosophila small silencing RNAs partitions microRNA strands into the RNA interference pathway. RNA 16: 43-56.
    • (2010) RNA , vol.16 , pp. 43-56
    • Ghildiyal, M.1    Xu, J.2    Seitz, H.3    Weng, Z.4    Zamore, P.D.5
  • 11
    • 3042602447 scopus 로고    scopus 로고
    • Kinetic analysis of the RNAi enzyme complex
    • Haley B, Zamore PD. 2004. Kinetic analysis of the RNAi enzyme complex. Nat Struct Mol Biol 11: 599-606.
    • (2004) Nat Struct Mol Biol , vol.11 , pp. 599-606
    • Haley, B.1    Zamore, P.D.2
  • 13
    • 70350569212 scopus 로고    scopus 로고
    • EndosiRNAs depend on a new isoform of loquacious and target artificially introduced, high-copy sequences
    • Hartig JV, Esslinger S, Bottcher R, Saito K, Förstemann K. 2009. EndosiRNAs depend on a new isoform of loquacious and target artificially introduced, high-copy sequences. EMBO J 28: 2932-2944.
    • (2009) EMBO J , vol.28 , pp. 2932-2944
    • Hartig, J.V.1    Esslinger, S.2    Bottcher, R.3    Saito, K.4    Förstemann, K.5
  • 14
    • 34447291602 scopus 로고    scopus 로고
    • The Drosophila RNA methyltransferase, DmHen1, modifies germline piRNAs and single-stranded siRNAs in RISC
    • Horwich MD, Li C, Matranga C, Vagin V, Farley G, Wang P, Zamore PD. 2007. The Drosophila RNA methyltransferase, DmHen1, modifies germline piRNAs and single-stranded siRNAs in RISC. Curr Biol 17: 1265-1272.
    • (2007) Curr Biol , vol.17 , pp. 1265-1272
    • Horwich, M.D.1    Li, C.2    Matranga, C.3    Vagin, V.4    Farley, G.5    Wang, P.6    Zamore, P.D.7
  • 16
    • 0037144546 scopus 로고    scopus 로고
    • A microRNA in a multiple-turnover RNAi enzyme complex
    • Hutvágner G, Zamore PD. 2002. A microRNA in a multiple-turnover RNAi enzyme complex. Science 297: 2056-2060.
    • (2002) Science , vol.297 , pp. 2056-2060
    • Hutvágner, G.1    Zamore, P.D.2
  • 17
    • 0035800521 scopus 로고    scopus 로고
    • A cellular function for the RNA-interference enzyme Dicer in the maturation of the let-7 small temporal RNA
    • Hutvágner G, McLachlan J, Pasquinelli AE, Balint É , Tuschl T, Zamore PD. 2001. A cellular function for the RNA-interference enzyme Dicer in the maturation of the let-7 small temporal RNA. Science 293: 834-838.
    • (2001) Science , vol.293 , pp. 834-838
    • Hutvágner, G.1    McLachlan, J.2    Pasquinelli, A.E.3    Balint, É.4    Tuschl, T.5    Zamore, P.D.6
  • 19
    • 63649105975 scopus 로고    scopus 로고
    • Drosophila Argonaute1 and Argonaute2 employ distinct mechanisms for translational repression
    • Iwasaki S, Kawamata T, Tomari Y. 2009. Drosophila Argonaute1 and Argonaute2 employ distinct mechanisms for translational repression. Mol Cell 34: 58-67.
    • (2009) Mol Cell , vol.34 , pp. 58-67
    • Iwasaki, S.1    Kawamata, T.2    Tomari, Y.3
  • 21
    • 23044462450 scopus 로고    scopus 로고
    • Dicer-1 and R3D1-L catalyze microRNA maturation in Drosophila
    • Jiang F, Ye X, Liu X, Fincher L, McKearin D, Liu Q. 2005. Dicer-1 and R3D1-L catalyze microRNA maturation in Drosophila. Genes Dev 19: 1674-1679.
    • (2005) Genes Dev , vol.19 , pp. 1674-1679
    • Jiang, F.1    Ye, X.2    Liu, X.3    Fincher, L.4    McKearin, D.5    Liu, Q.6
  • 22
    • 69949127421 scopus 로고    scopus 로고
    • Structural determinants of miRNAs for RISC loading and slicer-independent unwinding
    • Kawamata T, Seitz H, Tomari Y. 2009. Structural determinants of miRNAs for RISC loading and slicer-independent unwinding. Nat Struct Mol Biol 16: 953-960.
    • (2009) Nat Struct Mol Biol , vol.16 , pp. 953-960
    • Kawamata, T.1    Seitz, H.2    Tomari, Y.3
  • 24
    • 0035955361 scopus 로고    scopus 로고
    • An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
    • Lau NC, Lim LP, Weinstein EG, Bartel DP. 2001. An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans. Science 294: 858-862.
    • (2001) Science , vol.294 , pp. 858-862
    • Lau, N.C.1    Lim, L.P.2    Weinstein, E.G.3    Bartel, D.P.4
  • 25
    • 1842816517 scopus 로고    scopus 로고
    • Distinct roles for Drosophila Dicer-1 and Dicer-2 in the siRNA/miRNA silencing pathways
    • Lee YS, Nakahara K, Pham JW, Kim K, He Z, Sontheimer EJ, Carthew RW. 2004. Distinct roles for Drosophila Dicer-1 and Dicer-2 in the siRNA/miRNA silencing pathways. Cell 117: 69-81.
    • (2004) Cell , vol.117 , pp. 69-81
    • Lee, Y.S.1    Nakahara, K.2    Pham, J.W.3    Kim, K.4    He, Z.5    Sontheimer, E.J.6    Carthew, R.W.7
  • 26
    • 0141868916 scopus 로고    scopus 로고
    • R2D2, a bridge between the initiation and effector steps of the Drosophila RNAi pathway
    • Liu Q, Rand TA, Kalidas S, Du F, Kim HE, Smith DP, Wang X. 2003. R2D2, a bridge between the initiation and effector steps of the Drosophila RNAi pathway. Science 301: 1921-1925.
    • (2003) Science , vol.301 , pp. 1921-1925
    • Liu, Q.1    Rand, T.A.2    Kalidas, S.3    Du, F.4    Kim, H.E.5    Smith, D.P.6    Wang, X.7
  • 27
    • 33746581711 scopus 로고    scopus 로고
    • Dicer-2 and R2D2 coordinately bind siRNA to promote assembly of the siRISC complexes
    • Liu X, Jiang F, Kalidas S, Smith D, Liu Q. 2006. Dicer-2 and R2D2 coordinately bind siRNA to promote assembly of the siRISC complexes. RNA 12: 1514-1520.
    • (2006) RNA , vol.12 , pp. 1514-1520
    • Liu, X.1    Jiang, F.2    Kalidas, S.3    Smith, D.4    Liu, Q.5
  • 28
    • 15844371219 scopus 로고    scopus 로고
    • Structural basis for 59-end-specific recognition of guide RNA by the A. fulgidus Piwi protein
    • Ma JB, Yuan YR, Meister G, Pei Y, Tuschl T, Patel DJ. 2005. Structural basis for 59-end-specific recognition of guide RNA by the A. fulgidus Piwi protein. Nature 434: 666-670.
    • (2005) Nature , vol.434 , pp. 666-670
    • Ma, J.B.1    Yuan, Y.R.2    Meister, G.3    Pei, Y.4    Tuschl, T.5    Patel, D.J.6
  • 30
    • 41349114789 scopus 로고    scopus 로고
    • Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 59 terminal nucleotide
    • Mi S, Cai T, Hu Y, Chen Y, Hodges E, Ni F, Wu L, Li S, Zhou H, Long C, et al. 2008. Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 59 terminal nucleotide. Cell 133: 116-127.
    • (2008) Cell , vol.133 , pp. 116-127
    • Mi, S.1    Cai, T.2    Hu, Y.3    Chen, Y.4    Hodges, E.5    Ni, F.6    Wu, L.7    Li, S.8    Zhou, H.9    Long, C.10
  • 31
    • 77955426711 scopus 로고    scopus 로고
    • A direct role for Hsp90 in pre-RISC formation in Drosophila
    • Miyoshi T, Takeuchi A, Siomi H, Siomi MC. 2010. A direct role for Hsp90 in pre-RISC formation in Drosophila. Nat Struct Mol Biol 17: 1024-1026.
    • (2010) Nat Struct Mol Biol , vol.17 , pp. 1024-1026
    • Miyoshi, T.1    Takeuchi, A.2    Siomi, H.3    Siomi, M.C.4
  • 33
    • 3142729150 scopus 로고    scopus 로고
    • Distinct roles for Argonaute proteins in small RNA-directed RNA cleavage pathways
    • Okamura K, Ishizuka A, Siomi H, Siomi MC. 2004. Distinct roles for Argonaute proteins in small RNA-directed RNA cleavage pathways. Genes Dev 18: 1655-1666.
    • (2004) Genes Dev , vol.18 , pp. 1655-1666
    • Okamura, K.1    Ishizuka, A.2    Siomi, H.3    Siomi, M.C.4
  • 34
    • 44349101881 scopus 로고    scopus 로고
    • Two distinct mechanisms generate endogenous siRNAs from bidirectional transcription in Drosophila melanogaster
    • Okamura K, Balla S, Martin R, Liu N, Lai EC. 2008a. Two distinct mechanisms generate endogenous siRNAs from bidirectional transcription in Drosophila melanogaster.Nat Struct Mol Biol 15: 581-590.
    • (2008) Nat Struct Mol Biol , vol.15 , pp. 581-590
    • Okamura, K.1    Balla, S.2    Martin, R.3    Liu, N.4    Lai, E.C.5
  • 35
    • 44349084754 scopus 로고    scopus 로고
    • The Drosophila hairpin RNA pathway generates endogenous short interfering RNAs
    • Okamura K, Chung WJ, Ruby JG, Guo H, Bartel DP, Lai EC. 2008b. The Drosophila hairpin RNA pathway generates endogenous short interfering RNAs. Nature 453: 803-806.
    • (2008) Nature , vol.453 , pp. 803-806
    • Okamura, K.1    Chung, W.J.2    Ruby, J.G.3    Guo, H.4    Bartel, D.P.5    Lai, E.C.6
  • 36
    • 70449122099 scopus 로고    scopus 로고
    • Distinct mechanisms for microRNA strand selection by Drosophila Argonautes
    • Okamura K, Liu N, Lai EC. 2009. Distinct mechanisms for microRNA strand selection by Drosophila Argonautes. Mol Cell 36: 431-444.
    • (2009) Mol Cell , vol.36 , pp. 431-444
    • Okamura, K.1    Liu, N.2    Lai, E.C.3
  • 37
    • 33947107476 scopus 로고    scopus 로고
    • The miRNA pathway intrinsically controls self-renewal of Drosophila germline stem cells
    • Park JK, Liu X, Strauss TJ, McKearin DM, Liu Q. 2007. The miRNA pathway intrinsically controls self-renewal of Drosophila germline stem cells. Curr Biol 17: 533-538.
    • (2007) Curr Biol , vol.17 , pp. 533-538
    • Park, J.K.1    Liu, X.2    Strauss, T.J.3    McKearin, D.M.4    Liu, Q.5
  • 38
    • 15844402005 scopus 로고    scopus 로고
    • Structural insights into mRNA recognition from a PIWI domain-siRNA guide complex
    • Parker JS, Roe SM, Barford D. 2005. Structural insights into mRNA recognition from a PIWI domain-siRNA guide complex. Nature 434: 663-666.
    • (2005) Nature , vol.434 , pp. 663-666
    • Parker, J.S.1    Roe, S.M.2    Barford, D.3
  • 39
    • 33846810192 scopus 로고    scopus 로고
    • A novel repeat-associated small interfering RNA-mediated silencing pathway downregulates complementary sense gypsy transcripts in somatic cells of the Drosophila ovary
    • Pelisson A, Sarot E, Payen-Groschene G, Bucheton A. 2007. A novel repeat-associated small interfering RNA-mediated silencing pathway downregulates complementary sense gypsy transcripts in somatic cells of the Drosophila ovary. J Virol 81: 1951-1960.
    • (2007) J Virol , vol.81 , pp. 1951-1960
    • Pelisson, A.1    Sarot, E.2    Payen-Groschene, G.3    Bucheton, A.4
  • 40
    • 27744477630 scopus 로고    scopus 로고
    • Molecular requirements for RNAinduced silencing complex assembly in the Drosophila RNA interference pathway
    • Pham JW, Sontheimer EJ. 2005. Molecular requirements for RNAinduced silencing complex assembly in the Drosophila RNA interference pathway. J Biol Chem 280: 39278-39283.
    • (2005) J Biol Chem , vol.280 , pp. 39278-39283
    • Pham, J.W.1    Sontheimer, E.J.2
  • 41
    • 22744454230 scopus 로고    scopus 로고
    • Processing of pre-microRNAs by the Dicer-1-Loquacious complex in drosophila cells
    • DOI 10.1371/journal.pbio.0030235, e235
    • Saito K, Ishizuka A, Siomi H, Siomi MC. 2005. Processing of premicroRNAs by the Dicer-1-Loquacious complex in Drosophila cells. PLoS Biol 3: e235. doi: 10.1371/journal.pbio.0030235. (Pubitemid 41032188)
    • (2005) PLoS Biology , vol.3 , Issue.7 , pp. 1202-1212
    • Saito, K.1    Ishizuka, A.2    Siomi, H.3    Siomi, M.C.4
  • 45
    • 34447642555 scopus 로고    scopus 로고
    • Sorting of Drosophila small silencing RNAs
    • Tomari Y, Du T, Zamore PD. 2007. Sorting of Drosophila small silencing RNAs. Cell 130: 299-308.
    • (2007) Cell , vol.130 , pp. 299-308
    • Tomari, Y.1    Du, T.2    Zamore, P.D.3
  • 46
    • 0034737298 scopus 로고    scopus 로고
    • RNAi: Doublestranded RNA directs the ATP-dependent cleavage of mRNA at 21 to 23 nucleotide intervals
    • Zamore PD, Tuschl T, Sharp PA, Bartel DP. 2000. RNAi: doublestranded RNA directs the ATP-dependent cleavage of mRNA at 21 to 23 nucleotide intervals. Cell 101: 25-33.
    • (2000) Cell , vol.101 , pp. 25-33
    • Zamore, P.D.1    Tuschl, T.2    Sharp, P.A.3    Bartel, D.P.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.