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Volumn 41, Issue 10, 2013, Pages 5503-5512

Loop-miRs: Active microRNAs generated from single-stranded loop regions

Author keywords

[No Author keywords available]

Indexed keywords

ARGONAUTE 2 PROTEIN; EPITOPE; MICRORNA; MICRORNA 192; MICRORNA 219; MICRORNA 33A; MICRORNA 34A; SINGLE STRANDED RNA; UNCLASSIFIED DRUG;

EID: 84876349900     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkt251     Document Type: Article
Times cited : (38)

References (68)
  • 1
    • 61849137222 scopus 로고    scopus 로고
    • Many roads to maturity: MicroRNA biogenesis pathways and their regulation
    • Winter, J., Jung, S., Keller, S., Gregory, R.I. and Diederichs, S. (2009) Many roads to maturity: MicroRNA biogenesis pathways and their regulation. Nat. Cell. Biol., 11, 228-234.
    • (2009) Nat. Cell. Biol. , vol.11 , pp. 228-234
    • Winter, J.1    Jung, S.2    Keller, S.3    Gregory, R.I.4    Diederichs, S.5
  • 3
    • 10344248903 scopus 로고    scopus 로고
    • The human DiGeorge syndrome critical region gene 8 and Its D melanogaster homolog are required for miRNA biogenesis
    • Landthaler, M., Yalcin, A. and Tuschl, T. (2004) The human DiGeorge syndrome critical region gene 8 and Its D. melanogaster homolog are required for miRNA biogenesis. Curr. Biol., 14, 2162-2167.
    • (2004) Curr. Biol. , vol.14 , pp. 2162-2167
    • Landthaler, M.1    Yalcin, A.2    Tuschl, T.3
  • 4
    • 0035800521 scopus 로고    scopus 로고
    • A cellular function for the RNAinterference enzyme Dicer in the maturation of the let-7 small temporal RNA
    • Hutvagner, G., McLachlan, J., Pasquinelli, A.E., Balint, E., Tuschl, T. and Zamore, P.D. (2001) A cellular function for the RNAinterference enzyme Dicer in the maturation of the let-7 small temporal RNA. Science, 293, 834-838.
    • (2001) Science , vol.293 , pp. 834-838
    • Hutvagner, G.1    McLachlan, J.2    Pasquinelli, A.E.3    Balint, E.4    Tuschl, T.5    Zamore, P.D.6
  • 5
    • 29144431656 scopus 로고    scopus 로고
    • A human, ATPindependent, RISC assembly machine fueled by pre-miRNA
    • Maniataki, E. and Mourelatos, Z. (2005) A human, ATPindependent, RISC assembly machine fueled by pre-miRNA. Genes Dev., 19, 2979-2990.
    • (2005) Genes Dev. , vol.19 , pp. 2979-2990
    • Maniataki, E.1    Mourelatos, Z.2
  • 8
    • 0142165224 scopus 로고    scopus 로고
    • Functional siRNAs and miRNAs exhibit strand bias
    • Khvorova, A., Reynolds, A. and Jayasena, S.D. (2003) Functional siRNAs and miRNAs exhibit strand bias. Cell, 115, 209-216.
    • (2003) Cell , vol.115 , pp. 209-216
    • Khvorova, A.1    Reynolds, A.2    Jayasena, S.D.3
  • 9
    • 10744225153 scopus 로고    scopus 로고
    • Asymmetry in the assembly of the RNAi enzyme complex
    • Schwarz, D.S., Hutvagner, G., Du, T., Xu, Z., Aronin, N. and Zamore, P.D. (2003) Asymmetry in the assembly of the RNAi enzyme complex. Cell, 115, 199-208.
    • (2003) Cell , vol.115 , pp. 199-208
    • Schwarz, D.S.1    Hutvagner, G.2    Du, T.3    Xu, Z.4    Aronin, N.5    Zamore, P.D.6
  • 10
    • 41649089309 scopus 로고    scopus 로고
    • The regulatory activity of microRNA.* species has substantial influence on microRNA and 30 UTR evolution
    • Okamura, K., Phillips, M.D., Tyler, D.M., Duan, H., Chou, Y.T. and Lai, E.C. (2008) The regulatory activity of microRNA.* species has substantial influence on microRNA and 30 UTR evolution. Nat. Struct. Mol. Biol., 15, 354-363.
    • (2008) Nat. Struct. Mol. Biol. , vol.15 , pp. 354-363
    • Okamura, K.1    Phillips, M.D.2    Tyler, D.M.3    Duan, H.4    Chou, Y.T.5    Lai, E.C.6
  • 13
    • 34447107760 scopus 로고    scopus 로고
    • The mirtron pathway generates microRNA-class regulatory RNAs in Drosophila
    • Okamura, K., Hagen, J.W., Duan, H., Tyler, D.M. and Lai, E.C. (2007) The mirtron pathway generates microRNA-class regulatory RNAs in Drosophila. Cell, 130, 89-100.
    • (2007) Cell , vol.130 , pp. 89-100
    • Okamura, K.1    Hagen, J.W.2    Duan, H.3    Tyler, D.M.4    Lai, E.C.5
  • 14
    • 34447097693 scopus 로고    scopus 로고
    • Intronic microRNA precursors that bypass Drosha processing
    • Ruby, J.G., Jan, C.H. and Bartel, D.P. (2007) Intronic microRNA precursors that bypass Drosha processing. Nature, 448, 83-86.
    • (2007) Nature , vol.448 , pp. 83-86
    • Ruby, J.G.1    Jan, C.H.2    Bartel, D.P.3
  • 15
    • 54349104464 scopus 로고    scopus 로고
    • Mouse ES cells express endogenous shRNAs, siRNAs, and other Microprocessor-independent, Dicer-dependent small RNAs
    • Babiarz, J.E., Ruby, J.G., Wang, Y., Bartel, D.P. and Blelloch, R. (2008) Mouse ES cells express endogenous shRNAs, siRNAs, and other Microprocessor-independent, Dicer-dependent small RNAs. Genes Dev., 22, 2773-2785.
    • (2008) Genes Dev. , vol.22 , pp. 2773-2785
    • Babiarz, J.E.1    Ruby, J.G.2    Wang, Y.3    Bartel, D.P.4    Blelloch, R.5
  • 17
    • 77953183812 scopus 로고    scopus 로고
    • A dicer-independent miRNA biogenesis pathway that requires Ago catalysis
    • Cheloufi, S., Dos Santos, C.O., Chong, M.M. and Hannon, G.J. (2010) A dicer-independent miRNA biogenesis pathway that requires Ago catalysis. Nature, 465, 584-589.
    • (2010) Nature , vol.465 , pp. 584-589
    • Cheloufi, S.1    Dos Santos, C.O.2    Chong, M.M.3    Hannon, G.J.4
  • 20
    • 36849048778 scopus 로고    scopus 로고
    • Dual role for argonautes in microRNA processing and posttranscriptional regulation of microRNA expression
    • Diederichs, S. and Haber, D.A. (2007) Dual role for argonautes in microRNA processing and posttranscriptional regulation of microRNA expression. Cell, 131, 1097-1108.
    • (2007) Cell , vol.131 , pp. 1097-1108
    • Diederichs, S.1    Haber, D.A.2
  • 21
    • 0037031576 scopus 로고    scopus 로고
    • Single-stranded antisense siRNAs guide target RNA cleavage in RNAi
    • Martinez, J., Patkaniowska, A., Urlaub, H., Luhrmann, R. and Tuschl, T. (2002) Single-stranded antisense siRNAs guide target RNA cleavage in RNAi. Cell, 110, 563-574.
    • (2002) Cell , vol.110 , pp. 563-574
    • Martinez, J.1    Patkaniowska, A.2    Urlaub, H.3    Luhrmann, R.4    Tuschl, T.5
  • 24
  • 25
    • 0036752955 scopus 로고    scopus 로고
    • Evidence that siRNAs function as guides, not primers, in the Drosophila and human RNAi pathways
    • Schwarz, D.S., Hutvagner, G., Haley, B. and Zamore, P.D. (2002) Evidence that siRNAs function as guides, not primers, in the Drosophila and human RNAi pathways. Mol. Cell, 10, 537-548.
    • (2002) Mol. Cell , vol.10 , pp. 537-548
    • Schwarz, D.S.1    Hutvagner, G.2    Haley, B.3    Zamore, P.D.4
  • 28
    • 38149071979 scopus 로고    scopus 로고
    • Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
    • Ruby, J.G., Stark, A., Johnston, W.K., Kellis, M., Bartel, D.P. and Lai, E.C. (2007) Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs. Genome Res., 17, 1850-1864.
    • (2007) Genome Res. , vol.17 , pp. 1850-1864
    • Ruby, J.G.1    Stark, A.2    Johnston, W.K.3    Kellis, M.4    Bartel, D.P.5    Lai, E.C.6
  • 29
    • 75649129754 scopus 로고    scopus 로고
    • Sorting of drosophila small silencing RNAs partitions microRNA strands into the RNA interference pathway
    • Ghildiyal, M., Xu, J., Seitz, H., Weng, Z. and Zamore, P.D. (2010) Sorting of Drosophila small silencing RNAs partitions microRNA. strands into the RNA interference pathway. RNA, 16, 43-56.
    • (2010) RNA , vol.16 , pp. 43-56
    • Ghildiyal, M.1    Xu, J.2    Seitz, H.3    Weng, Z.4    Zamore, P.D.5
  • 32
    • 84859192322 scopus 로고    scopus 로고
    • Rare drosha splice variants are deficient in MicroRNA processing but do not affect general MicroRNA expression in cancer cells
    • Grund, S.E., Polycarpou-Schwarz, M., Luo, C., Eichmuller, S.B. and Diederichs, S. (2012) Rare drosha splice variants are deficient in MicroRNA processing but do not affect general MicroRNA expression in cancer cells. Neoplasia, 14, 238-248.
    • (2012) Neoplasia , vol.14 , pp. 238-248
    • Grund, S.E.1    Polycarpou-Schwarz, M.2    Luo, C.3    Eichmuller, S.B.4    Diederichs, S.5
  • 33
    • 37649021046 scopus 로고    scopus 로고
    • Identification of human microRNA targets from isolated argonaute protein complexes
    • Beitzinger, M., Peters, L., Zhu, J.Y., Kremmer, E. and Meister, G. (2007) Identification of human microRNA targets from isolated argonaute protein complexes. RNA Biol., 4, 76-84.
    • (2007) RNA Biol. , vol.4 , pp. 76-84
    • Beitzinger, M.1    Peters, L.2    Zhu, J.Y.3    Kremmer, E.4    Meister, G.5
  • 34
    • 79954461556 scopus 로고    scopus 로고
    • Modulation of T cell cytokine production by miR-144.* with elevated expression in patients with pulmonary tuberculosis
    • Liu, Y., Wang, X., Jiang, J., Cao, Z., Yang, B. and Cheng, X. (2011) Modulation of T cell cytokine production by miR-144.* with elevated expression in patients with pulmonary tuberculosis. Mol. Immunol., 48, 1084-1090.
    • (2011) Mol. Immunol. , vol.48 , pp. 1084-1090
    • Liu, Y.1    Wang, X.2    Jiang, J.3    Cao, Z.4    Yang, B.5    Cheng, X.6
  • 35
    • 39849097124 scopus 로고    scopus 로고
    • Ectopic expression of miR-126.* an intronic product of the vascular endothelial EGF-like 7 gene, regulates prostein translation and invasiveness of prostate cancer LNCaP cells
    • Musiyenko, A., Bitko, V. and Barik, S. (2008) Ectopic expression of miR-126.* an intronic product of the vascular endothelial EGF-like 7 gene, regulates prostein translation and invasiveness of prostate cancer LNCaP cells. J. Mol. Med., 86, 313-322.
    • (2008) J. Mol. Med. , vol.86 , pp. 313-322
    • Musiyenko, A.1    Bitko, V.2    Barik, S.3
  • 36
    • 58149375393 scopus 로고    scopus 로고
    • The bifunctional microRNA miR-9/miR-9.* regulates REST and CoREST and is downregulated in Huntington's disease
    • Packer, A.N., Xing, Y., Harper, S.Q., Jones, L. and Davidson, B.L. (2008) The bifunctional microRNA miR-9/miR-9.* regulates REST and CoREST and is downregulated in Huntington's disease. J. Neurosci., 28, 14341-14346.
    • (2008) J. Neurosci. , vol.28 , pp. 14341-14346
    • Packer, A.N.1    Xing, Y.2    Harper, S.Q.3    Jones, L.4    Davidson, B.L.5
  • 39
    • 66749160812 scopus 로고    scopus 로고
    • The miR-18a * specimicroRNA functions as a potential tumor suppressor by targeting on K-Ras
    • Tsang, W.P. and Kwok, T.T. (2009) The miR-18a * specimicroRNA functions as a potential tumor suppressor by targeting on K-Ras. Carcinogenesis, 30, 953-959.
    • (2009) Carcinogenesis , vol.30 , pp. 953-959
    • Tsang, W.P.1    Kwok, T.T.2
  • 41
    • 33749059160 scopus 로고    scopus 로고
    • MiRBase: The microRNA sequence database
    • Griffiths-Jones, S. (2006) miRBase: The microRNA sequence database. Methods Mol. Biol., 342, 129-138.
    • (2006) Methods Mol. Biol. , vol.342 , pp. 129-138
    • Griffiths-Jones, S.1
  • 43
    • 84867681364 scopus 로고    scopus 로고
    • A comprehensive analysis of precursor microRNA cleavage by human Dicer
    • Feng, Y., Zhang, X., Graves, P. and Zeng, Y. (2012) A comprehensive analysis of precursor microRNA cleavage by human Dicer. RNA, 18, 2083-2092.
    • (2012) RNA , vol.18 , pp. 2083-2092
    • Feng, Y.1    Zhang, X.2    Graves, P.3    Zeng, Y.4
  • 44
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker, M. (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res., 31, 3406-3415.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3406-3415
    • Zuker, M.1
  • 46
    • 81255176919 scopus 로고    scopus 로고
    • Argonaute proteins regulate microRNA stability: Increased microRNA abundance by Argonaute proteins is due to microRNA stabilization
    • Winter, J. and Diederichs, S. (2011) Argonaute proteins regulate microRNA stability: Increased microRNA abundance by Argonaute proteins is due to microRNA stabilization. RNA Biol., 8, 1149-1157.
    • (2011) RNA Biol. , vol.8 , pp. 1149-1157
    • Winter, J.1    Diederichs, S.2
  • 51
    • 84876351771 scopus 로고    scopus 로고
    • Functional small RNAs are generated from select miRNA hairpin loops in flies and mammals
    • Okamura, K., Ladewig, E., Zhou, L. and Lai, E.C. (2013) Functional small RNAs are generated from select miRNA hairpin loops in flies and mammals. Genes Dev., 27, 778-792.
    • (2013) Genes Dev. , vol.27 , pp. 778-792
    • Okamura, K.1    Ladewig, E.2    Zhou, L.3    Lai, E.C.4
  • 55
    • 65949105697 scopus 로고    scopus 로고
    • MiR-196a regulates proliferation and osteogenic differentiation in mesenchymal stem cells derived from human adipose tissue
    • Kim, Y.J., Bae, S.W., Yu, S.S., Bae, Y.C. and Jung, J.S. (2009) miR-196a regulates proliferation and osteogenic differentiation in mesenchymal stem cells derived from human adipose tissue. J. Bone. Miner Res., 24, 816-825.
    • (2009) J. Bone. Miner Res. , vol.24 , pp. 816-825
    • Kim, Y.J.1    Bae, S.W.2    Yu, S.S.3    Bae, Y.C.4    Jung, J.S.5
  • 59
    • 80051793013 scopus 로고    scopus 로고
    • MicroRNA-194 inhibits epithelial to mesenchymal transition of endometrial cancer cells by targeting oncogene BMI-1
    • Dong, P., Kaneuchi, M., Watari, H., Hamada, J., Sudo, S., Ju, J. and Sakuragi, N. (2011) MicroRNA-194 inhibits epithelial to mesenchymal transition of endometrial cancer cells by targeting oncogene BMI-1. Mol. Cancer, 10, 99.
    • (2011) Mol. Cancer , vol.10 , pp. 99
    • Dong, P.1    Kaneuchi, M.2    Watari, H.3    Hamada, J.4    Sudo, S.5    Ju, J.6    Sakuragi, N.7
  • 60
    • 84863070560 scopus 로고    scopus 로고
    • A functional polymorphism at microRNA-629-binding site in the 30-untranslated region of NBS1 gene confers an increased risk of lung cancer in Southern and Eastern Chinese population
    • Yang, L., Li, Y., Cheng, M., Huang, D., Zheng, J., Liu, B., Ling, X., Li, Q., Zhang, X., Ji, W. et al. (2012) A functional polymorphism at microRNA-629-binding site in the 30-untranslated region of NBS1 gene confers an increased risk of lung cancer in Southern and Eastern Chinese population. Carcinogenesis, 33, 338-347.
    • (2012) Carcinogenesis , vol.33 , pp. 338-347
    • Yang, L.1    Li, Y.2    Cheng, M.3    Huang, D.4    Zheng, J.5    Liu, B.6    Ling, X.7    Li, Q.8    Zhang, X.9    Ji, W.10
  • 61
    • 77958489647 scopus 로고    scopus 로고
    • Hsa-miR-9 methylation status is associated with cancer development and metastatic recurrence in patients with clear cell renal cell carcinoma
    • Hildebrandt, M.A., Gu, J., Lin, J., Ye, Y., Tan, W., Tamboli, P., Wood, C.G. and Wu, X. (2010) Hsa-miR-9 methylation status is associated with cancer development and metastatic recurrence in patients with clear cell renal cell carcinoma. Oncogene, 29, 5724-5728.
    • (2010) Oncogene , vol.29 , pp. 5724-5728
    • Hildebrandt, M.A.1    Gu, J.2    Lin, J.3    Ye, Y.4    Tan, W.5    Tamboli, P.6    Wood, C.G.7    Wu, X.8
  • 62
    • 33845677227 scopus 로고    scopus 로고
    • MIR-206 regulates connexin43 expression during skeletal muscle development
    • Anderson, C., Catoe, H. and Werner, R. (2006) MIR-206 regulates connexin43 expression during skeletal muscle development. Nucleic Acids Res., 34, 5863-5871.
    • (2006) Nucleic Acids Res. , vol.34 , pp. 5863-5871
    • Anderson, C.1    Catoe, H.2    Werner, R.3
  • 64
    • 59349098653 scopus 로고    scopus 로고
    • Regulation of the hepatitis C virus genome replication by miR-199a
    • Murakami, Y., Aly, H.H., Tajima, A., Inoue, I. and Shimotohno, K. (2009) Regulation of the hepatitis C virus genome replication by miR-199a. J. Hepatol., 50, 453-460.
    • (2009) J. Hepatol. , vol.50 , pp. 453-460
    • Murakami, Y.1    Aly, H.H.2    Tajima, A.3    Inoue, I.4    Shimotohno, K.5
  • 65
    • 65549097632 scopus 로고    scopus 로고
    • MicroRNA-23b mediates urokinase and c-met downmodulation and a decreased migration of human hepatocellular carcinoma cells
    • Salvi, A., Sabelli, C., Moncini, S., Venturin, M., Arici, B., Riva, P., Portolani, N., Giulini, S.M., De Petro, G. and Barlati, S. (2009) MicroRNA-23b mediates urokinase and c-met downmodulation and a decreased migration of human hepatocellular carcinoma cells. FEBS J., 276, 2966-2982.
    • (2009) FEBS J , vol.276 , pp. 2966-2982
    • Salvi, A.1    Sabelli, C.2    Moncini, S.3    Venturin, M.4    Arici, B.5    Riva, P.6    Portolani, N.7    Giulini, S.M.8    De Petro, G.9    Barlati, S.10
  • 66
    • 78549277802 scopus 로고    scopus 로고
    • MicroRNA miR-144 modulates oxidative stress tolerance and associates with anemia severity in sickle cell disease
    • Sangokoya, C., Telen, M.J. and Chi, J.T. (2010) microRNA miR-144 modulates oxidative stress tolerance and associates with anemia severity in sickle cell disease. Blood, 116, 4338-4348.
    • (2010) Blood , vol.116 , pp. 4338-4348
    • Sangokoya, C.1    Telen, M.J.2    Chi, J.T.3
  • 67
    • 79953767181 scopus 로고    scopus 로고
    • MicroRNA profiling of adrenocortical tumors reveals miR-483 as a marker of malignancy
    • Patterson, E.E., Holloway, A.K., Weng, J., Fojo, T. and Kebebew, E. (2011) MicroRNA profiling of adrenocortical tumors reveals miR-483 as a marker of malignancy. Cancer, 117, 1630-1639.
    • (2011) Cancer , vol.117 , pp. 1630-1639
    • Patterson, E.E.1    Holloway, A.K.2    Weng, J.3    Fojo, T.4    Kebebew, E.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.