Transcription factor binding predictions using TRAP for the analysis of ChIP-seq data and regulatory SNPs

Nature Protocols

Volumn 6, Issue 12, 2011, Pages 1860-1869

  Thomas Chollier, Morgane ^a   Hufton, Andrew ^a   Heinig, Matthias ^a   O'Keeffe, Sean ^a   Masri, Nassim El ^a   Roider, Helge G ^a   Manke, Thomas ^b   Vingron, Martin ^a  

^a MAX PLANCK INSTITUTE FOR MOLECULAR GENETICS   (Germany)

^b MAX PLANCK INSTITUTE OF IMMUNOBIOLOGY AND EPIGENETICS   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ALPHA GLOBULIN; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR GATA 1;

ANALYTIC METHOD; ARTICLE; BINDING AFFINITY; BINDING SITE; BIOINFORMATICS; CALCULATION; CHROMATIN IMMUNOPRECIPITATION; CONTROLLED STUDY; DATA ANALYSIS; DNA MICROARRAY; DNA SEQUENCE; ONLINE SYSTEM; PREDICTION; PRIORITY JOURNAL; SINGLE NUCLEOTIDE POLYMORPHISM; TRANSCRIPTION FACTOR AFFINITY PREDICTION METHOD;

BINDING SITES; CHROMATIN IMMUNOPRECIPITATION; POLYMORPHISM, SINGLE NUCLEOTIDE; PROMOTER REGIONS, GENETIC; SOFTWARE; TRANSCRIPTION FACTORS;

EID: 80955137934     PISSN: 17542189     EISSN: 17502799     Source Type: Journal    
DOI: 10.1038/nprot.2011.409     Document Type: Article

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