메뉴 건너뛰기




Volumn 4, Issue 1, 2013, Pages 61-76

The significant other: Splicing by the minor spliceosome

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; SMALL NUCLEAR RIBONUCLEOPROTEIN;

EID: 84871429958     PISSN: 17577004     EISSN: 17577012     Source Type: Journal    
DOI: 10.1002/wrna.1141     Document Type: Review
Times cited : (255)

References (110)
  • 1
    • 0025836071 scopus 로고
    • A reappraisal of non-consensus mRNA splice sites.
    • Jackson IJ. A reappraisal of non-consensus mRNA splice sites. Nucleic Acids Res 1991, 19:3795-3798.
    • (1991) Nucleic Acids Res , vol.19 , pp. 3795-3798
    • Jackson, I.J.1
  • 2
    • 0028366003 scopus 로고
    • Conserved sequences in a class of rare eukaryotic nuclear introns with non-consensus splice-sites.
    • Hall SL, Padgett RA. Conserved sequences in a class of rare eukaryotic nuclear introns with non-consensus splice-sites. J Mol Biol 1994, 239:357-365.
    • (1994) J Mol Biol , vol.239 , pp. 357-365
    • Hall, S.L.1    Padgett, R.A.2
  • 3
    • 12644306849 scopus 로고    scopus 로고
    • Splicing of a divergent subclass of AT-AC introns requires the major class spliceosomal snRNAs.
    • Wu Q, Krainer AR. Splicing of a divergent subclass of AT-AC introns requires the major class spliceosomal snRNAs. RNA 1997, 3:586-601.
    • (1997) RNA , vol.3 , pp. 586-601
    • Wu, Q.1    Krainer, A.R.2
  • 4
    • 0032247416 scopus 로고    scopus 로고
    • Evolutionary fates and origins of U12-type introns.
    • Burge CB, Padgett RA, Sharp PA. Evolutionary fates and origins of U12-type introns. Mol Cell 1998, 2:773-785.
    • (1998) Mol Cell , vol.2 , pp. 773-785
    • Burge, C.B.1    Padgett, R.A.2    Sharp, P.A.3
  • 5
    • 0031306509 scopus 로고    scopus 로고
    • Terminal intron dinucleotide sequences do not distinguish between U2- and U12-dependent introns.
    • Dietrich RC, Incorvaia R, Padgett RA. Terminal intron dinucleotide sequences do not distinguish between U2- and U12-dependent introns. Mol Cell 1997, 1:151-160.
    • (1997) Mol Cell , vol.1 , pp. 151-160
    • Dietrich, R.C.1    Incorvaia, R.2    Padgett, R.A.3
  • 6
    • 0031456850 scopus 로고    scopus 로고
    • Classification of introns: U2 type or U12 type.
    • Sharp PA, Burge CB. Classification of introns: U2 type or U12 type. Cell 1997, 91:875-879.
    • (1997) Cell , vol.91 , pp. 875-879
    • Sharp, P.A.1    Burge, C.B.2
  • 7
    • 33846071878 scopus 로고    scopus 로고
    • U12DB: a database of orthologous U12-type spliceosomal introns.
    • Alioto TS. U12DB: a database of orthologous U12-type spliceosomal introns. Nucleic Acids Res 2007, 35(suppl 1):D110-D115.
    • (2007) Nucleic Acids Res , vol.35 , Issue.SUPPL. 1
    • Alioto, T.S.1
  • 9
    • 42449129086 scopus 로고    scopus 로고
    • Human branch point consensus sequence is yUnAy.
    • Gao K, Masuda A, Matsuura T, Ohno K. Human branch point consensus sequence is yUnAy. Nucleic Acids Res 2008, 36:2257-2267.
    • (2008) Nucleic Acids Res , vol.36 , pp. 2257-2267
    • Gao, K.1    Masuda, A.2    Matsuura, T.3    Ohno, K.4
  • 11
    • 24044457307 scopus 로고    scopus 로고
    • A mutational analysis of U12-dependent splice site dinucleotides.
    • Dietrich RC, Fuller JD, Padgett RA. A mutational analysis of U12-dependent splice site dinucleotides. RNA 2005, 11:1430-1440.
    • (2005) RNA , vol.11 , pp. 1430-1440
    • Dietrich, R.C.1    Fuller, J.D.2    Padgett, R.A.3
  • 13
    • 0035476520 scopus 로고    scopus 로고
    • A computational scan for U12-dependent introns in the human genome sequence.
    • Levine A, Durbin R. A computational scan for U12-dependent introns in the human genome sequence. Nucleic Acids Res 2001, 29:4006-4013.
    • (2001) Nucleic Acids Res , vol.29 , pp. 4006-4013
    • Levine, A.1    Durbin, R.2
  • 15
    • 55549126845 scopus 로고    scopus 로고
    • Mutational analysis of the U12-dependent branch site consensus sequence.
    • Brock JE, Dietrich RC, Padgett RA. Mutational analysis of the U12-dependent branch site consensus sequence. RNA 2008, 14:2430-2439.
    • (2008) RNA , vol.14 , pp. 2430-2439
    • Brock, J.E.1    Dietrich, R.C.2    Padgett, R.A.3
  • 16
    • 0041660916 scopus 로고    scopus 로고
    • Identification, characterization and molecular phylogeny of U12-dependent introns in the Arabidopsis thaliana genome.
    • Zhu W, Brendel V. Identification, characterization and molecular phylogeny of U12-dependent introns in the Arabidopsis thaliana genome. Nucleic Acids Res 2003, 31:4561-4572.
    • (2003) Nucleic Acids Res , vol.31 , pp. 4561-4572
    • Zhu, W.1    Brendel, V.2
  • 18
    • 33750336226 scopus 로고    scopus 로고
    • An early evolutionary origin for the minor spliceosome.
    • Russell AG, Charette JM, Spencer DF, Gray MW. An early evolutionary origin for the minor spliceosome. Nature 2006, 443:863-866.
    • (2006) Nature , vol.443 , pp. 863-866
    • Russell, A.G.1    Charette, J.M.2    Spencer, D.F.3    Gray, M.W.4
  • 19
    • 77949461898 scopus 로고    scopus 로고
    • U12 type introns were lost at multiple occasions during evolution.
    • Bartschat S, Samuelsson T. U12 type introns were lost at multiple occasions during evolution. BMC Genomics 2010, 11:106.
    • (2010) BMC Genomics , vol.11 , pp. 106
    • Bartschat, S.1    Samuelsson, T.2
  • 20
    • 3042791298 scopus 로고    scopus 로고
    • Identification of an evolutionarily divergent U11 small nuclear ribonucleoprotein particle in Drosophila.
    • Schneider C, Will CL, Brosius J, Frilander MJ, Lührmann R. Identification of an evolutionarily divergent U11 small nuclear ribonucleoprotein particle in Drosophila. Proc Natl Acad Sci U S A 2004, 101: 9584-9589.
    • (2004) Proc Natl Acad Sci U S A , vol.101 , pp. 9584-9589
    • Schneider, C.1    Will, C.L.2    Brosius, J.3    Frilander, M.J.4    Lührmann, R.5
  • 22
    • 84861890038 scopus 로고    scopus 로고
    • Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis.
    • Marquez Y, Brown JWS, Simpson C, Barta A, Kalyna M. Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis. Genome Res 2012, 22:1184-1195.
    • (2012) Genome Res , vol.22 , pp. 1184-1195
    • Marquez, Y.1    Brown, J.W.S.2    Simpson, C.3    Barta, A.4    Kalyna, M.5
  • 23
    • 44349155377 scopus 로고    scopus 로고
    • Computational screen for spliceosomal RNA genes aids in defining the phylogenetic distribution of major and minor spliceosomal components.
    • Dávila López M, Rosenblad MA, Samuelsson T. Computational screen for spliceosomal RNA genes aids in defining the phylogenetic distribution of major and minor spliceosomal components. Nucleic Acids Res 2008, 36:3001-3010.
    • (2008) Nucleic Acids Res , vol.36 , pp. 3001-3010
    • Dávila López, M.1    Rosenblad, M.A.2    Samuelsson, T.3
  • 24
    • 34249696543 scopus 로고    scopus 로고
    • Discovery and analysis of evolutionarily conserved intronic splicing regulatory elements.
    • Yeo GW, Van Nostrand EL, Liang TY. Discovery and analysis of evolutionarily conserved intronic splicing regulatory elements. PLoS Genet 2007, 3:e85.
    • (2007) PLoS Genet , vol.3
    • Yeo, G.W.1    Van Nostrand, E.L.2    Liang, T.Y.3
  • 25
    • 0032933429 scopus 로고    scopus 로고
    • AT-AC pre-mRNA splicing mechanism and conservation of minor introns in voltage-gated ion channel genes.
    • Wu Q, Krainer AR. AT-AC pre-mRNA splicing mechanism and conservation of minor introns in voltage-gated ion channel genes. Mol Cell Biol 1999, 19:3225-3236.
    • (1999) Mol Cell Biol , vol.19 , pp. 3225-3236
    • Wu, Q.1    Krainer, A.R.2
  • 27
    • 0345169036 scopus 로고    scopus 로고
    • Splicing double: Insights from the second spliceosome.
    • Patel AA, Steitz JA. Splicing double: Insights from the second spliceosome. Nat Rev Mol Cell Biol 2003, 4:960-970.
    • (2003) Nat Rev Mol Cell Biol , vol.4 , pp. 960-970
    • Patel, A.A.1    Steitz, J.A.2
  • 28
    • 0036240466 scopus 로고    scopus 로고
    • Human U4/U6.U5 and U4atac/U6atac.U5 tri-snRNPs exhibit similar protein compositions.
    • Schneider C, Will CL, Makarova OV, Makarov EM, Lührmann R. Human U4/U6.U5 and U4atac/U6atac.U5 tri-snRNPs exhibit similar protein compositions. Mol Cell Biol 2002, 22:3219-3229.
    • (2002) Mol Cell Biol , vol.22 , pp. 3219-3229
    • Schneider, C.1    Will, C.L.2    Makarova, O.V.3    Makarov, E.M.4    Lührmann, R.5
  • 29
    • 0037107418 scopus 로고    scopus 로고
    • Hierarchical, clustered protein interactions with U4/U6 snRNA: a biochemical role for U4/U6 proteins.
    • Nottrott S, Urlaub H, Lührmann R. Hierarchical, clustered protein interactions with U4/U6 snRNA: a biochemical role for U4/U6 proteins. EMBO J 2002, 21:5527-5538.
    • (2002) EMBO J , vol.21 , pp. 5527-5538
    • Nottrott, S.1    Urlaub, H.2    Lührmann, R.3
  • 30
    • 0026561544 scopus 로고
    • The low-abundance U11 and U12 small nuclear ribonucleoproteins (snRNPs) interact to form a two-snRNP complex.
    • Wassarman KM, Steitz JA. The low-abundance U11 and U12 small nuclear ribonucleoproteins (snRNPs) interact to form a two-snRNP complex. Mol Cell Biol 1992, 12:1276-1285.
    • (1992) Mol Cell Biol , vol.12 , pp. 1276-1285
    • Wassarman, K.M.1    Steitz, J.A.2
  • 31
    • 0024230675 scopus 로고
    • Additional low-abundance human small nuclear ribonucleoproteins: U11, U12 etc.
    • Montzka KA, Steitz JA. Additional low-abundance human small nuclear ribonucleoproteins: U11, U12 etc. Proc Natl Acad Sci U S A 1988, 85:8885-8889.
    • (1988) Proc Natl Acad Sci U S A , vol.85 , pp. 8885-8889
    • Montzka, K.A.1    Steitz, J.A.2
  • 32
  • 33
    • 0037634375 scopus 로고    scopus 로고
    • Identification of both shared and distinct proteins in the major and minor spliceosomes.
    • Will CL, Schneider C, Reed R, Lührmann R. Identification of both shared and distinct proteins in the major and minor spliceosomes. Science 1999, 284:2003-2005.
    • (1999) Science , vol.284 , pp. 2003-2005
    • Will, C.L.1    Schneider, C.2    Reed, R.3    Lührmann, R.4
  • 34
  • 35
    • 80455178824 scopus 로고    scopus 로고
    • Functionally important structural elements of U12 snRNA.
    • Sikand K, Shukla GC. Functionally important structural elements of U12 snRNA. Nucleic Acids Res 2011, 39:8531-8543.
    • (2011) Nucleic Acids Res , vol.39 , pp. 8531-8543
    • Sikand, K.1    Shukla, G.C.2
  • 36
    • 84858999890 scopus 로고    scopus 로고
    • New connections between splicing and human disease.
    • Padgett RA. New connections between splicing and human disease. Trends Genet: TIG 2012, 28: 147-154.
    • (2012) Trends Genet: TIG , vol.28 , pp. 147-154
    • Padgett, R.A.1
  • 37
  • 38
    • 79957784833 scopus 로고    scopus 로고
    • Interaction between the RNA binding domains of Ser-Arg splicing factor 1 and U1-70K snRNP protein determines early spliceosome assembly.
    • Cho S, Hoang A, Sinha R, Zhong XY, Fu XD, Krainer AR, Ghosh G. Interaction between the RNA binding domains of Ser-Arg splicing factor 1 and U1-70K snRNP protein determines early spliceosome assembly. Proc Natl Acad Sci U S A 2011, 108: 8233-8238.
    • (2011) Proc Natl Acad Sci U S A , vol.108 , pp. 8233-8238
    • Cho, S.1    Hoang, A.2    Sinha, R.3    Zhong, X.Y.4    Fu, X.D.5    Krainer, A.R.6    Ghosh, G.7
  • 39
    • 0030044836 scopus 로고    scopus 로고
    • Evidence that sequence-independent binding of highly conserved U2 snRNP proteins upstream of the branch site is required for assembly of spliceosomal complex A.
    • Gozani O, Feld R, Reed R. Evidence that sequence-independent binding of highly conserved U2 snRNP proteins upstream of the branch site is required for assembly of spliceosomal complex A. Genes Dev 1996, 10:233-243.
    • (1996) Genes Dev , vol.10 , pp. 233-243
    • Gozani, O.1    Feld, R.2    Reed, R.3
  • 40
    • 79551619256 scopus 로고    scopus 로고
    • The Arabidopsis U12-type spliceosomal protein U11/U12-31K is involved in U12 intron splicing via RNA chaperone activity and affects plant development.
    • Kim WY, Jung HJ, Kwak KJ, Kim MK, Oh SH, Han YS, Kang H. The Arabidopsis U12-type spliceosomal protein U11/U12-31K is involved in U12 intron splicing via RNA chaperone activity and affects plant development. Plant Cell 2010, 22:3951-3962.
    • (2010) Plant Cell , vol.22 , pp. 3951-3962
    • Kim, W.Y.1    Jung, H.J.2    Kwak, K.J.3    Kim, M.K.4    Oh, S.H.5    Han, Y.S.6    Kang, H.7
  • 41
    • 22244432192 scopus 로고    scopus 로고
    • Evolutionary conservation of minor U12-type spliceosome between plants and humans.
    • Lorković ZJ, Lehner R, Forstner R, Barta A. Evolutionary conservation of minor U12-type spliceosome between plants and humans. RNA 2005, 11: 1095-1107.
    • (2005) RNA , vol.11 , pp. 1095-1107
    • Lorković, Z.J.1    Lehner, R.2    Forstner, R.3    Barta, A.4
  • 42
    • 4043102604 scopus 로고    scopus 로고
    • Interactions of Arabidopsis RS domain containing cyclophilins with SR proteins and U1 and U11 small nuclear ribonucleoprotein-specific proteins suggest their involvement in pre-mRNA splicing.
    • Lorković ZJ, Lopato S, Pexa M, Lehner R, Barta A. Interactions of Arabidopsis RS domain containing cyclophilins with SR proteins and U1 and U11 small nuclear ribonucleoprotein-specific proteins suggest their involvement in pre-mRNA splicing. J Biol Chem 2004, 279:33890-33898.
    • (2004) J Biol Chem , vol.279 , pp. 33890-33898
    • Lorković, Z.J.1    Lopato, S.2    Pexa, M.3    Lehner, R.4    Barta, A.5
  • 43
    • 43249101441 scopus 로고    scopus 로고
    • The U11-48K protein contacts the 5′ splice site of U12-type introns and the U11-59K protein.
    • Turunen JJ, Will CL, Grote M, Lührmann R, Frilander MJ. The U11-48K protein contacts the 5′ splice site of U12-type introns and the U11-59K protein. Mol Cell Biol 2008, 28:3548-3560.
    • (2008) Mol Cell Biol , vol.28 , pp. 3548-3560
    • Turunen, J.J.1    Will, C.L.2    Grote, M.3    Lührmann, R.4    Frilander, M.J.5
  • 44
    • 27144468045 scopus 로고    scopus 로고
    • The U11/U12 snRNP 65K protein acts as a molecular bridge, binding the U12 snRNA and U11-59K protein.
    • Benecke H, Lührmann R, Will CL. The U11/U12 snRNP 65K protein acts as a molecular bridge, binding the U12 snRNA and U11-59K protein. EMBO J 2005, 24:3057-3069.
    • (2005) EMBO J , vol.24 , pp. 3057-3069
    • Benecke, H.1    Lührmann, R.2    Will, C.L.3
  • 45
    • 78049446517 scopus 로고    scopus 로고
    • The U2AF35-related protein Urp contacts the 3′ splice site to promote U12-type intron splicing and the second step of U2-type intron splicing.
    • Shen H, Zheng X, Luecke S, Green MR. The U2AF35-related protein Urp contacts the 3′ splice site to promote U12-type intron splicing and the second step of U2-type intron splicing. Genes Dev 2010, 24:2389-2394.
    • (2010) Genes Dev , vol.24 , pp. 2389-2394
    • Shen, H.1    Zheng, X.2    Luecke, S.3    Green, M.R.4
  • 46
    • 0037119975 scopus 로고    scopus 로고
    • Characterization of novel SF3b and 17S U2 snRNP proteins, including a human Prp5p homologue and an SF3b DEAD-box protein.
    • Will CL, Urlaub H, Achsel T, Gentzel M, Wilm M, Lührmann R. Characterization of novel SF3b and 17S U2 snRNP proteins, including a human Prp5p homologue and an SF3b DEAD-box protein. EMBO J 2002, 21:4978-4988.
    • (2002) EMBO J , vol.21 , pp. 4978-4988
    • Will, C.L.1    Urlaub, H.2    Achsel, T.3    Gentzel, M.4    Wilm, M.5    Lührmann, R.6
  • 47
    • 0033119176 scopus 로고    scopus 로고
    • Initial recognition of U12-dependent introns requires both U11/5′ splice-site and U12/branchpoint interactions.
    • Frilander MJ, Steitz JA. Initial recognition of U12-dependent introns requires both U11/5′ splice-site and U12/branchpoint interactions. Genes Dev 1999, 13: 851-863.
    • (1999) Genes Dev , vol.13 , pp. 851-863
    • Frilander, M.J.1    Steitz, J.A.2
  • 48
    • 0030941474 scopus 로고    scopus 로고
    • U11 snRNA interacts in vivo with the 5′ splice site of U12-dependent (AU-AC) pre-mRNA introns.
    • Kolossova I, Padgett RA. U11 snRNA interacts in vivo with the 5′ splice site of U12-dependent (AU-AC) pre-mRNA introns. RNA 1997, 3:227-233.
    • (1997) RNA , vol.3 , pp. 227-233
    • Kolossova, I.1    Padgett, R.A.2
  • 49
    • 59649087166 scopus 로고    scopus 로고
    • Solution structure of the U11-48K CHHC zinc-finger domain that specifically binds the 5′ splice site of U12-type introns.
    • Tidow H, Andreeva A, Rutherford TJ, Fersht AR. Solution structure of the U11-48K CHHC zinc-finger domain that specifically binds the 5′ splice site of U12-type introns. Structure 2009, 17:294-302.
    • (2009) Structure , vol.17 , pp. 294-302
    • Tidow, H.1    Andreeva, A.2    Rutherford, T.J.3    Fersht, A.R.4
  • 50
    • 0029989519 scopus 로고    scopus 로고
    • Requirement of U12 snRNA for in vivo splicing of a minor class of eukaryotic nuclear pre-mRNA introns.
    • Hall SL, Padgett RA. Requirement of U12 snRNA for in vivo splicing of a minor class of eukaryotic nuclear pre-mRNA introns. Science 1996, 271:1716-1718.
    • (1996) Science , vol.271 , pp. 1716-1718
    • Hall, S.L.1    Padgett, R.A.2
  • 51
    • 0029863992 scopus 로고    scopus 로고
    • A novel spliceosome containing U11, U12 and U5 snRNPs excises a minor class (AT-AC) intron in vitro.
    • Tarn W-Y, Steitz JA. A novel spliceosome containing U11, U12 and U5 snRNPs excises a minor class (AT-AC) intron in vitro. Cell 1996, 84:801-811.
    • (1996) Cell , vol.84 , pp. 801-811
    • Tarn, W.-Y.1    Steitz, J.A.2
  • 52
    • 0036257216 scopus 로고    scopus 로고
    • Branchpoint selection in the splicing of U12-dependent introns in vitro.
    • McConnell TS, Cho SJ, Frilander MJ, Steitz JA. Branchpoint selection in the splicing of U12-dependent introns in vitro. RNA 2002, 8:579-586.
    • (2002) RNA , vol.8 , pp. 579-586
    • McConnell, T.S.1    Cho, S.J.2    Frilander, M.J.3    Steitz, J.A.4
  • 54
    • 78650428748 scopus 로고    scopus 로고
    • Structural model of the p14/SF3b155.branch duplex complex.
    • Schellenberg MJ, Dul EL, MacMillan AM. Structural model of the p14/SF3b155.branch duplex complex. RNA 2011, 17:155-165.
    • (2011) RNA , vol.17 , pp. 155-165
    • Schellenberg, M.J.1    Dul, E.L.2    MacMillan, A.M.3
  • 55
    • 34447130937 scopus 로고    scopus 로고
    • RS domain-splicing signal interactions in splicing of U12-type and U2-type introns.
    • Shen H, Green MR. RS domain-splicing signal interactions in splicing of U12-type and U2-type introns. Nat Struct Mol Biol 2007, 14:597-603.
    • (2007) Nat Struct Mol Biol , vol.14 , pp. 597-603
    • Shen, H.1    Green, M.R.2
  • 56
    • 84863022278 scopus 로고    scopus 로고
    • A U1-U2 snRNP interaction network during intron definition.
    • Shao W, Kim HS, Cao Y, Xu YZ, Query CC. A U1-U2 snRNP interaction network during intron definition. Mol Cell Biol 2012, 32:470-478.
    • (2012) Mol Cell Biol , vol.32 , pp. 470-478
    • Shao, W.1    Kim, H.S.2    Cao, Y.3    Xu, Y.Z.4    Query, C.C.5
  • 57
    • 15244359121 scopus 로고    scopus 로고
    • Major conformational change in the complex SF3b upon integration into the spliceosomal U11/U12 di-snRNP as revealed by electron cryomicroscopy.
    • Golas MM, Sander B, Will CL, Lührmann R, Stark H. Major conformational change in the complex SF3b upon integration into the spliceosomal U11/U12 di-snRNP as revealed by electron cryomicroscopy. Mol Cell 2005, 17:869-883.
    • (2005) Mol Cell , vol.17 , pp. 869-883
    • Golas, M.M.1    Sander, B.2    Will, C.L.3    Lührmann, R.4    Stark, H.5
  • 58
    • 20344369784 scopus 로고    scopus 로고
    • Proximity of the U12 snRNA with both the 5′ splice site and the branch point during early stages of spliceosome assembly.
    • Frilander MJ, Meng X. Proximity of the U12 snRNA with both the 5′ splice site and the branch point during early stages of spliceosome assembly. Mol Cell Biol 2005, 25:4813-4825.
    • (2005) Mol Cell Biol , vol.25 , pp. 4813-4825
    • Frilander, M.J.1    Meng, X.2
  • 59
    • 0029763477 scopus 로고    scopus 로고
    • Highly diverged U4 and U6 small nuclear RNAs required for splicing rare AT-AC introns.
    • Tarn W-Y, Steitz JA. Highly diverged U4 and U6 small nuclear RNAs required for splicing rare AT-AC introns. Science 1996, 273:1824-1832.
    • (1996) Science , vol.273 , pp. 1824-1832
    • Tarn, W.-Y.1    Steitz, J.A.2
  • 60
    • 66449092594 scopus 로고    scopus 로고
    • The conserved 3′ end domain of U6atac snRNA can direct U6 snRNA to the minor spliceosome.
    • Dietrich RC, Padgett RA, Shukla GC. The conserved 3′ end domain of U6atac snRNA can direct U6 snRNA to the minor spliceosome. RNA 2009, 15:1198-1207.
    • (2009) RNA , vol.15 , pp. 1198-1207
    • Dietrich, R.C.1    Padgett, R.A.2    Shukla, G.C.3
  • 61
    • 0035104772 scopus 로고    scopus 로고
    • Dynamic exchanges of RNA interactions leading to catalytic core formation in the U12-dependent spliceosome.
    • Frilander MJ, Steitz JA. Dynamic exchanges of RNA interactions leading to catalytic core formation in the U12-dependent spliceosome. Mol Cell 2001, 7:217-226.
    • (2001) Mol Cell , vol.7 , pp. 217-226
    • Frilander, M.J.1    Steitz, J.A.2
  • 62
    • 0031745936 scopus 로고    scopus 로고
    • Base pairing with U6atac snRNA is required for 5′ splice site activation of U12-dependent introns in vivo.
    • Incorvaia R, Padgett RA. Base pairing with U6atac snRNA is required for 5′ splice site activation of U12-dependent introns in vivo. RNA 1998, 4:709-718.
    • (1998) RNA , vol.4 , pp. 709-718
    • Incorvaia, R.1    Padgett, R.A.2
  • 63
    • 0030918785 scopus 로고    scopus 로고
    • Site-specific crosslinking of mammalian U11 and U6atac to the 5′ splice site of an AT-AC intron.
    • Yu Y-T, Steitz JA. Site-specific crosslinking of mammalian U11 and U6atac to the 5′ splice site of an AT-AC intron. Proc Natl Acad Sci U S A 1997, 94:6030-6035.
    • (1997) Proc Natl Acad Sci U S A , vol.94 , pp. 6030-6035
    • Yu, Y.-T.1    Steitz, J.A.2
  • 64
    • 60349104299 scopus 로고    scopus 로고
    • The spliceosome: design principles of a dynamic RNP machine.
    • Wahl MC, Will CL, Lührmann R. The spliceosome: design principles of a dynamic RNP machine. Cell 2009, 136:701-718.
    • (2009) Cell , vol.136 , pp. 701-718
    • Wahl, M.C.1    Will, C.L.2    Lührmann, R.3
  • 65
    • 0035038510 scopus 로고    scopus 로고
    • The intramolecular stem-loop structure of U6 snRNA can functionally replace the U6atac snRNA stem-loop.
    • Shukla GC, Padgett RA. The intramolecular stem-loop structure of U6 snRNA can functionally replace the U6atac snRNA stem-loop. RNA 2001, 7:94-105.
    • (2001) RNA , vol.7 , pp. 94-105
    • Shukla, G.C.1    Padgett, R.A.2
  • 66
  • 67
    • 0032943029 scopus 로고    scopus 로고
    • Conservation of functional features of U6atac and U12 snRNAs between vertebrates and higher plants.
    • Shukla GC, Padgett RA. Conservation of functional features of U6atac and U12 snRNAs between vertebrates and higher plants. RNA 1999, 5:525-538.
    • (1999) RNA , vol.5 , pp. 525-538
    • Shukla, G.C.1    Padgett, R.A.2
  • 68
    • 70350754211 scopus 로고    scopus 로고
    • Rates of in situ transcription and splicing in large human genes.
    • Singh J, Padgett RA. Rates of in situ transcription and splicing in large human genes. Nat Struct Mol Biol 2009, 16:1128-1133.
    • (2009) Nat Struct Mol Biol , vol.16 , pp. 1128-1133
    • Singh, J.1    Padgett, R.A.2
  • 69
    • 0028131207 scopus 로고
    • RNA-protein interactions in the nuclei of Xenopus oocytes: complex formation and processing activity on the regulatory intron of ribosomal protein gene L1.
    • Santoro B, De Gregorio E, Caffarelli E, Bozzoni I. RNA-protein interactions in the nuclei of Xenopus oocytes: complex formation and processing activity on the regulatory intron of ribosomal protein gene L1. Mol Cell Biol 1994, 14:6975-6982.
    • (1994) Mol Cell Biol , vol.14 , pp. 6975-6982
    • Santoro, B.1    De Gregorio, E.2    Caffarelli, E.3    Bozzoni, I.4
  • 70
    • 33749261487 scopus 로고    scopus 로고
    • The abundance of the spliceosomal snRNPs is not limiting the splicing of U12-type introns.
    • Pessa HK, Ruokolainen A, Frilander MJ. The abundance of the spliceosomal snRNPs is not limiting the splicing of U12-type introns. RNA 2006, 12: 1883-1892.
    • (2006) RNA , vol.12 , pp. 1883-1892
    • Pessa, H.K.1    Ruokolainen, A.2    Frilander, M.J.3
  • 71
    • 0037099491 scopus 로고    scopus 로고
    • The splicing of U12-type introns can be a rate-limiting step in gene expression.
    • Patel AA, McCarthy M, Steitz JA. The splicing of U12-type introns can be a rate-limiting step in gene expression. EMBO J 2002, 21:3804-3815.
    • (2002) EMBO J , vol.21 , pp. 3804-3815
    • Patel, A.A.1    McCarthy, M.2    Steitz, J.A.3
  • 72
    • 36049041612 scopus 로고    scopus 로고
    • RNA quality control in eukaryotes.
    • Doma MK, Parker R. RNA quality control in eukaryotes. Cell 2007, 131:660-668.
    • (2007) Cell , vol.131 , pp. 660-668
    • Doma, M.K.1    Parker, R.2
  • 73
    • 36049047997 scopus 로고    scopus 로고
    • Splicing segregation: the minor spliceosome acts outside the nucleus and controls cell proliferation.
    • König H, Matter N, Bader R, Thiele W, Müller F. Splicing segregation: the minor spliceosome acts outside the nucleus and controls cell proliferation. Cell 2007, 131:718-729.
    • (2007) Cell , vol.131 , pp. 718-729
    • König, H.1    Matter, N.2    Bader, R.3    Thiele, W.4    Müller, F.5
  • 76
    • 47949092128 scopus 로고    scopus 로고
    • Minor-class splicing occurs in the nucleus of the Xenopus oocyte.
    • Friend K, Kolev NG, Shu M-D, Steitz JA. Minor-class splicing occurs in the nucleus of the Xenopus oocyte. RNA 2008, 14:1459-1462.
    • (2008) RNA , vol.14 , pp. 1459-1462
    • Friend, K.1    Kolev, N.G.2    Shu, M.-D.3    Steitz, J.A.4
  • 77
    • 0035037737 scopus 로고    scopus 로고
    • Functions of SR proteins in the U12-dependent AT-AC pre-mRNA splicing pathway.
    • Hastings ML, Krainer AR. Functions of SR proteins in the U12-dependent AT-AC pre-mRNA splicing pathway. RNA 2001, 7:471-482.
    • (2001) RNA , vol.7 , pp. 471-482
    • Hastings, M.L.1    Krainer, A.R.2
  • 78
    • 0031730213 scopus 로고    scopus 로고
    • Purine-rich enhancers function in the AT-AC pre-mRNA splicing pathway and do so independently of intact U1 snRNP.
    • Wu Q, Krainer AR. Purine-rich enhancers function in the AT-AC pre-mRNA splicing pathway and do so independently of intact U1 snRNP. RNA 1998, 4:1664-1673.
    • (1998) RNA , vol.4 , pp. 1664-1673
    • Wu, Q.1    Krainer, A.R.2
  • 79
    • 33646337943 scopus 로고    scopus 로고
    • Heterogeneous nuclear ribonucleoprotein H is required for optimal U11 small nuclear ribonucleoprotein binding to a retroviral RNA-processing control element: implications for U12-dependent RNA splicing.
    • McNally LM, Yee L, McNally MT. Heterogeneous nuclear ribonucleoprotein H is required for optimal U11 small nuclear ribonucleoprotein binding to a retroviral RNA-processing control element: implications for U12-dependent RNA splicing. J Biol Chem 2006, 281:2478-2488.
    • (2006) J Biol Chem , vol.281 , pp. 2478-2488
    • McNally, L.M.1    Yee, L.2    McNally, M.T.3
  • 80
    • 0030575916 scopus 로고    scopus 로고
    • U1-mediated exon definition interactions between AT-AC and GT-AG introns.
    • Wu Q, Krainer AR. U1-mediated exon definition interactions between AT-AC and GT-AG introns. Science 1996, 274:1005-1008.
    • (1996) Science , vol.274 , pp. 1005-1008
    • Wu, Q.1    Krainer, A.R.2
  • 82
    • 34247849492 scopus 로고    scopus 로고
    • Alternative splicing and bioinformatic analysis of human U12-type introns.
    • Chang W-C, Chen Y-C, Lee K-M, Tarn W-Y. Alternative splicing and bioinformatic analysis of human U12-type introns. Nucleic Acids Res 2007, 35: 1833-1841.
    • (2007) Nucleic Acids Res , vol.35 , pp. 1833-1841
    • Chang, W.-C.1    Chen, Y.-C.2    Lee, K.-M.3    Tarn, W.-Y.4
  • 83
    • 11444258520 scopus 로고    scopus 로고
    • An LKB1 AT-AC intron mutation causes Peutz-Jeghers syndrome via splicing at noncanonical cryptic splice sites.
    • Hastings ML, Resta N, Traum D, Stella A, Guanti G, Krainer AR. An LKB1 AT-AC intron mutation causes Peutz-Jeghers syndrome via splicing at noncanonical cryptic splice sites. Nat Struct Mol Biol 2005, 12:54-59.
    • (2005) Nat Struct Mol Biol , vol.12 , pp. 54-59
    • Hastings, M.L.1    Resta, N.2    Traum, D.3    Stella, A.4    Guanti, G.5    Krainer, A.R.6
  • 84
    • 0036184249 scopus 로고    scopus 로고
    • The divergent U12-type spliceosome is required for pre-mRNA splicing and is essential for development in Drosophila.
    • Otake LR, Scamborova P, Hashimoto C, Steitz JA. The divergent U12-type spliceosome is required for pre-mRNA splicing and is essential for development in Drosophila. Mol Cell 2002, 9:439-446.
    • (2002) Mol Cell , vol.9 , pp. 439-446
    • Otake, L.R.1    Scamborova, P.2    Hashimoto, C.3    Steitz, J.A.4
  • 85
    • 62449296880 scopus 로고    scopus 로고
    • Drosophila hnRNP A1 homologs Hrp36/Hrp38 enhance U2-type versus U12-type splicing to regulate alternative splicing of the prospero twintron.
    • Borah S, Wong AC, Steitz JA. Drosophila hnRNP A1 homologs Hrp36/Hrp38 enhance U2-type versus U12-type splicing to regulate alternative splicing of the prospero twintron. Proc Natl Acad Sci U S A 2009, 106:2577-2582.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 2577-2582
    • Borah, S.1    Wong, A.C.2    Steitz, J.A.3
  • 86
    • 1342346504 scopus 로고    scopus 로고
    • An intronic enhancer regulates splicing of the twintron of Drosophila melanogaster prospero pre-mRNA by two different spliceosomes.
    • Scamborova P, Wong A, Steitz JA. An intronic enhancer regulates splicing of the twintron of Drosophila melanogaster prospero pre-mRNA by two different spliceosomes. Mol Cell Biol 2004, 24: 1855-1869.
    • (2004) Mol Cell Biol , vol.24 , pp. 1855-1869
    • Scamborova, P.1    Wong, A.2    Steitz, J.A.3
  • 89
    • 78149449393 scopus 로고    scopus 로고
    • Gene expression profiling of U12-type spliceosome mutant Drosophila reveals widespread changes in metabolic pathways.
    • Pessa HKJ, Greco D, Kvist J, Wahlström G, Heino TI, Auvinen P, Frilander MJ. Gene expression profiling of U12-type spliceosome mutant Drosophila reveals widespread changes in metabolic pathways. PLoS ONE 2010, 5:e13215.
    • (2010) PLoS ONE , vol.5
    • Pessa, H.K.J.1    Greco, D.2    Kvist, J.3    Wahlström, G.4    Heino, T.I.5    Auvinen, P.6    Frilander, M.J.7
  • 90
    • 33845208497 scopus 로고    scopus 로고
    • Isolation, expression, and characterization of the human ZCRB1 gene mapped to 12q12.
    • Wang H, Gao MX, Li L, Wang B, Hori N, Sato K. Isolation, expression, and characterization of the human ZCRB1 gene mapped to 12q12. Genomics 2007, 89:59-69.
    • (2007) Genomics , vol.89 , pp. 59-69
    • Wang, H.1    Gao, M.X.2    Li, L.3    Wang, B.4    Hori, N.5    Sato, K.6
  • 91
    • 0346727151 scopus 로고    scopus 로고
    • Cloning and identification of a novel human RNPC3 gene that encodes a protein with two RRM domains and is expressed in the cell nucleus.
    • Zhao E, Li J, Xie Y, Jin W, Zhang Z, et al. Cloning and identification of a novel human RNPC3 gene that encodes a protein with two RRM domains and is expressed in the cell nucleus. Biochem Genet 2003, 41:315-323.
    • (2003) Biochem Genet , vol.41 , pp. 315-323
    • Zhao, E.1    Li, J.2    Xie, Y.3    Jin, W.4    Zhang, Z.5
  • 92
    • 62849083628 scopus 로고    scopus 로고
    • Noncanonical and canonical splice sites: a novel mutation at the rare noncanonical splice-donor cut site (IVS4+1A>G) of SEDL causes variable splicing isoforms in X-linked spondyloepiphyseal dysplasia tarda.
    • Xiong F, Gao J, Li J, Liu Y, Feng G, Fang W, Chang H, Xie J, Zheng H, Li T, He L. Noncanonical and canonical splice sites: a novel mutation at the rare noncanonical splice-donor cut site (IVS4+1A>G) of SEDL causes variable splicing isoforms in X-linked spondyloepiphyseal dysplasia tarda. Eur J Hum Genet 2009, 17:510-516.
    • (2009) Eur J Hum Genet , vol.17 , pp. 510-516
    • Xiong, F.1    Gao, J.2    Li, J.3    Liu, Y.4    Feng, G.5    Fang, W.6    Chang, H.7    Xie, J.8    Zheng, H.9    Li, T.10    He, L.11
  • 94
    • 0032952059 scopus 로고    scopus 로고
    • Coiled bodies preferentially associate with U4, U11, and U12 small nuclear RNA genes in interphase HeLa cells but not with U6 and U7 genes.
    • Jacobs EY, Frey MR, Wu W, Ingledue TC, Gebuhr TC, Gao L, Marzluff WF, Matera AG. Coiled bodies preferentially associate with U4, U11, and U12 small nuclear RNA genes in interphase HeLa cells but not with U6 and U7 genes. Mol Biol Cell 1999, 10:1653-1663.
    • (1999) Mol Biol Cell , vol.10 , pp. 1653-1663
    • Jacobs, E.Y.1    Frey, M.R.2    Wu, W.3    Ingledue, T.C.4    Gebuhr, T.C.5    Gao, L.6    Marzluff, W.F.7    Matera, A.G.8
  • 95
    • 0029348058 scopus 로고
    • U12 snRNA in vertebrates: evolutionary conservation of 5′ sequences implicated in splicing of pre-mRNAs containing a minor class of introns.
    • Tarn W-Y, Yario TA, Steitz JA. U12 snRNA in vertebrates: evolutionary conservation of 5′ sequences implicated in splicing of pre-mRNAs containing a minor class of introns. RNA 1995, 1:644-656.
    • (1995) RNA , vol.1 , pp. 644-656
    • Tarn, W.-Y.1    Yario, T.A.2    Steitz, J.A.3
  • 96
    • 79953816415 scopus 로고    scopus 로고
    • Minor splicing, disrupted.
    • Pessa HKJ, Frilander MJ. Minor splicing, disrupted. Science 2011, 332:184-185.
    • (2011) Science , vol.332 , pp. 184-185
    • Pessa, H.K.J.1    Frilander, M.J.2
  • 98
    • 43049168361 scopus 로고    scopus 로고
    • SMN deficiency causes tissue-specific perturbations in the repertoire of snRNAs and widespread defects in splicing.
    • Zhang Z, Lotti F, Dittmar K, Younis I, Wan L, Kasim M, Dreyfuss G. SMN deficiency causes tissue-specific perturbations in the repertoire of snRNAs and widespread defects in splicing. Cell 2008, 133: 585-600.
    • (2008) Cell , vol.133 , pp. 585-600
    • Zhang, Z.1    Lotti, F.2    Dittmar, K.3    Younis, I.4    Wan, L.5    Kasim, M.6    Dreyfuss, G.7
  • 99
    • 78751685185 scopus 로고    scopus 로고
    • Impaired minor tri-snRNP assembly generates differential splicing defects of U12-type introns in lymphoblasts derived from a type I SMA patient.
    • Boulisfane N, Choleza M, Rage F, Neel H, Soret J, Bordonné R. Impaired minor tri-snRNP assembly generates differential splicing defects of U12-type introns in lymphoblasts derived from a type I SMA patient. Hum Mol Genet 2011, 20:641-648.
    • (2011) Hum Mol Genet , vol.20 , pp. 641-648
    • Boulisfane, N.1    Choleza, M.2    Rage, F.3    Neel, H.4    Soret, J.5    Bordonné, R.6
  • 100
    • 41549119007 scopus 로고    scopus 로고
    • Ribonucleoprotein assembly defects correlate with spinal muscular atrophy severity and preferentially affect a subset of spliceosomal snRNPs.
    • Gabanella F, Butchbach MER, Saieva L, Carissimi C, Burghes AHM, Pellizzoni L. Ribonucleoprotein assembly defects correlate with spinal muscular atrophy severity and preferentially affect a subset of spliceosomal snRNPs. PLoS ONE 2007, 2:e921.
    • (2007) PLoS ONE , vol.2
    • Gabanella, F.1    Butchbach, M.E.R.2    Saieva, L.3    Carissimi, C.4    Burghes, A.H.M.5    Pellizzoni, L.6
  • 101
    • 0036888952 scopus 로고    scopus 로고
    • The evolution of spliceosomal introns.
    • Lynch M, Richardson AO. The evolution of spliceosomal introns. Curr Opin Genet Dev 2002, 12:701-710.
    • (2002) Curr Opin Genet Dev , vol.12 , pp. 701-710
    • Lynch, M.1    Richardson, A.O.2
  • 102
    • 54849437046 scopus 로고    scopus 로고
    • Primordial spliceosomal introns were probably U2-type.
    • Basu MK, Rogozin IB, Koonin EV. Primordial spliceosomal introns were probably U2-type. Trends Genet 2008, 24:525-528.
    • (2008) Trends Genet , vol.24 , pp. 525-528
    • Basu, M.K.1    Rogozin, I.B.2    Koonin, E.V.3
  • 103
    • 67651124996 scopus 로고    scopus 로고
    • Splicing in the eukaryotic ancestor: form, function and dysfunction.
    • Roy SW, Irimia M. Splicing in the eukaryotic ancestor: form, function and dysfunction. Trends Ecol Evol 2009, 24:447-455.
    • (2009) Trends Ecol Evol , vol.24 , pp. 447-455
    • Roy, S.W.1    Irimia, M.2
  • 104
    • 45549107558 scopus 로고    scopus 로고
    • U12 intron positions are more strongly conserved between animals and plants than U2 intron positions.
    • Basu MK, Makalowski W, Rogozin IB, Koonin EV. U12 intron positions are more strongly conserved between animals and plants than U2 intron positions. Biol Direct 2008, 3:19.
    • (2008) Biol Direct , vol.3 , pp. 19
    • Basu, M.K.1    Makalowski, W.2    Rogozin, I.B.3    Koonin, E.V.4
  • 105
    • 12744263064 scopus 로고    scopus 로고
    • Comparison of splice sites in mammals and chicken.
    • Abril JF, Castelo R, Guigo R. Comparison of splice sites in mammals and chicken. Genome Res 2005, 15:111-119.
    • (2005) Genome Res , vol.15 , pp. 111-119
    • Abril, J.F.1    Castelo, R.2    Guigo, R.3
  • 106
    • 34247330971 scopus 로고    scopus 로고
    • Unproductive splicing of SR genes associated with highly conserved and ultraconserved DNA elements.
    • Lareau LF, Inada M, Green RE, Wengrod JC, Brenner SE. Unproductive splicing of SR genes associated with highly conserved and ultraconserved DNA elements. Nature 2007, 446:926-929.
    • (2007) Nature , vol.446 , pp. 926-929
    • Lareau, L.F.1    Inada, M.2    Green, R.E.3    Wengrod, J.C.4    Brenner, S.E.5
  • 107
    • 33947305594 scopus 로고    scopus 로고
    • Ultraconserved elements are associated with homeostatic control of splicing regulators by alternative splicing and nonsense-mediated decay.
    • Ni JZ, Grate L, Donohue JP, Preston C, Nobida N, O'Brien G, Shiue L, Clark TA, Blume JE, Ares M Jr. Ultraconserved elements are associated with homeostatic control of splicing regulators by alternative splicing and nonsense-mediated decay. Genes Dev 2007, 21:708-718.
    • (2007) Genes Dev , vol.21 , pp. 708-718
    • Ni, J.Z.1    Grate, L.2    Donohue, J.P.3    Preston, C.4    Nobida, N.5    O'Brien, G.6    Shiue, L.7    Clark, T.A.8    Blume, J.E.9    Ares Jr., M.10
  • 108
    • 46149112362 scopus 로고    scopus 로고
    • Regulation of multiple core spliceosomal proteins by alternative splicing-coupled nonsense-mediated mRNA decay.
    • Saltzman AL, Kim YK, Pan Q, Fagnani MM, Maquat LE, Blencowe BJ. Regulation of multiple core spliceosomal proteins by alternative splicing-coupled nonsense-mediated mRNA decay. Mol Cell Biol 2008, 28:4320-4330.
    • (2008) Mol Cell Biol , vol.28 , pp. 4320-4330
    • Saltzman, A.L.1    Kim, Y.K.2    Pan, Q.3    Fagnani, M.M.4    Maquat, L.E.5    Blencowe, B.J.6
  • 109
    • 79951715071 scopus 로고    scopus 로고
    • Regulation of alternative splicing by the core spliceosomal machinery.
    • Saltzman AL, Pan Q, Blencowe BJ. Regulation of alternative splicing by the core spliceosomal machinery. Genes Dev 2011, 25:373-384.
    • (2011) Genes Dev , vol.25 , pp. 373-384
    • Saltzman, A.L.1    Pan, Q.2    Blencowe, B.J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.