메뉴 건너뛰기




Volumn 2, Issue 6, 1998, Pages 773-785

Evolutionary fates and origins of U12-type introns

Author keywords

[No Author keywords available]

Indexed keywords

SMALL NUCLEAR RIBONUCLEOPROTEIN; U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN;

EID: 0032247416     PISSN: 10972765     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1097-2765(00)80292-0     Document Type: Article
Times cited : (233)

References (42)
  • 3
    • 0021799352 scopus 로고
    • Ty elements transpose through an RNA intermediate
    • Boeke, J.D., Garfinkel, D.J., Styles, C.A., and Fink, G.R. (1985). Ty elements transpose through an RNA intermediate. Cell 40, 491-500.
    • (1985) Cell , vol.40 , pp. 491-500
    • Boeke, J.D.1    Garfinkel, D.J.2    Styles, C.A.3    Fink, G.R.4
  • 4
    • 0030949953 scopus 로고    scopus 로고
    • Evolutionary comparisons of RecA-like proteins across all major kingdoms of living organisms
    • Brendel, V. , Brocchieri, L., Sandler, S.J., Clark, A.J., and Karlin, S. (1997). Evolutionary comparisons of RecA-like proteins across all major kingdoms of living organisms. J. Mol. Evol. 44, 528-541.
    • (1997) J. Mol. Evol. , vol.44 , pp. 528-541
    • Brendel, V.1    Brocchieri, L.2    Sandler, S.J.3    Clark, A.J.4    Karlin, S.5
  • 5
    • 0031470387 scopus 로고    scopus 로고
    • Archaea and the prokaryote-to-eukaryote transition
    • Brown, J.R., and Doolittle, W.F. (1997). Archaea and the prokaryote-to-eukaryote transition. Microbiol. Mol. Biol. Rev. 61, 456-502.
    • (1997) Microbiol. Mol. Biol. Rev. , vol.61 , pp. 456-502
    • Brown, J.R.1    Doolittle, W.F.2
  • 6
    • 0001468848 scopus 로고    scopus 로고
    • Splicing of precursors to mRNAs by the spliceosomes
    • R.F. Gesteland, T. Cech, and J.F. Atkins, eds. (Cold Spring Harbor, NY: Cold Spring Laboratory Press), in press
    • Burge, C.B., Tuschl, T.H., and Sharp, P.A. (1998). Splicing of precursors to mRNAs by the spliceosomes. In The RNA World II, R.F. Gesteland, T. Cech, and J.F. Atkins, eds. (Cold Spring Harbor, NY: Cold Spring Laboratory Press), in press.
    • (1998) The RNA World II
    • Burge, C.B.1    Tuschl, T.H.2    Sharp, P.A.3
  • 7
    • 0027446476 scopus 로고
    • A role for reverse transcripts in gene conversion
    • Derr, L.K., and Strathern, J.N. (1993). A role for reverse transcripts in gene conversion. Nature 361, 170-173.
    • (1993) Nature , vol.361 , pp. 170-173
    • Derr, L.K.1    Strathern, J.N.2
  • 8
    • 0031306509 scopus 로고    scopus 로고
    • Terminal dinucleotide sequences do not distinguish between U2- and U12-dependent introns
    • Dietrich, R.C., Incorvaia, R., and Padgett, R.A. (1997). Terminal dinucleotide sequences do not distinguish between U2- and U12-dependent introns. Mol. Cell 1, 151-160.
    • (1997) Mol. Cell , vol.1 , pp. 151-160
    • Dietrich, R.C.1    Incorvaia, R.2    Padgett, R.A.3
  • 9
    • 0030696044 scopus 로고    scopus 로고
    • Determining divergence times with a protein clock: Update and reevaluation
    • Feng, D.-F., Cho, G., and Doolittle, R.F. (1997). Determining divergence times with a protein clock: update and reevaluation. Proc. Natl. Acad. Sci. USA 94, 13028-13033.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 13028-13033
    • Feng, D.-F.1    Cho, G.2    Doolittle, R.F.3
  • 10
    • 0027470081 scopus 로고
    • Genomic organization of the human skeletal muscle sodium channel gene
    • George, A.L., Iyer, G.S., Kleinfield, R., Kallen, R.G., and Barchi, R.L. (1993). Genomic organization of the human skeletal muscle sodium channel gene. Genomics 16, 598-606.
    • (1993) Genomics , vol.16 , pp. 598-606
    • George, A.L.1    Iyer, G.S.2    Kleinfield, R.3    Kallen, R.G.4    Barchi, R.L.5
  • 11
    • 0029923838 scopus 로고    scopus 로고
    • The origin of the eukaryotic cell
    • Gupta, R.S., and Golding, G.B. (1996). The origin of the eukaryotic cell. Trends Biochem. Sci. 21, 166-171.
    • (1996) Trends Biochem. Sci. , vol.21 , pp. 166-171
    • Gupta, R.S.1    Golding, G.B.2
  • 12
    • 0028366003 scopus 로고
    • Conserved sequences in a class of rare eukaryotic nuclear introns with non-consensus splice sites
    • Hall, S.L., and Padgett, R.A. (1994). Conserved sequences in a class of rare eukaryotic nuclear introns with non-consensus splice sites. J. Mol. Biol. 239, 357-365.
    • (1994) J. Mol. Biol. , vol.239 , pp. 357-365
    • Hall, S.L.1    Padgett, R.A.2
  • 13
    • 0029989519 scopus 로고    scopus 로고
    • Requirement of U12 snRNA for in vivo splicing of a minor class of eukaryotic nuclear pre-mRNA introns
    • Hall, S.L., and Padgett, R.A. (1996). Requirement of U12 snRNA for in vivo splicing of a minor class of eukaryotic nuclear pre-mRNA introns. Science 271, 1716-1718.
    • (1996) Science , vol.271 , pp. 1716-1718
    • Hall, S.L.1    Padgett, R.A.2
  • 14
    • 0029020282 scopus 로고
    • The eukaryotic protein kinase super-family: Kinase (catalytic) domain structure and classification
    • Hanks, S.K., and Hunter, T. (1995). The eukaryotic protein kinase super-family: kinase (catalytic) domain structure and classification. FASEB J. 9, 576-596.
    • (1995) FASEB J. , vol.9 , pp. 576-596
    • Hanks, S.K.1    Hunter, T.2
  • 15
    • 0027317580 scopus 로고
    • Performance evaluation of amino acid substitution matrices
    • Henikoff, S., and Henikoff, J.G. (1993). Performance evaluation of amino acid substitution matrices. Proteins 17, 49-61.
    • (1993) Proteins , vol.17 , pp. 49-61
    • Henikoff, S.1    Henikoff, J.G.2
  • 16
    • 0031745936 scopus 로고    scopus 로고
    • Base pairing with U6atac is required for 5′ splice site activation of U12-dependent introns in vivo
    • Incorvaia, R., and Padgett, R.A. (1998). Base pairing with U6atac is required for 5′ splice site activation of U12-dependent introns in vivo. RNA 4, 709-718.
    • (1998) RNA , vol.4 , pp. 709-718
    • Incorvaia, R.1    Padgett, R.A.2
  • 17
    • 0025836071 scopus 로고
    • A reappraisal of non-consensus mRNA splice sites
    • Jackson, I.J. (1991). A reappraisal of non-consensus mRNA splice sites. Nucleic Acids Res. 19, 3795-3798.
    • (1991) Nucleic Acids Res. , vol.19 , pp. 3795-3798
    • Jackson, I.J.1
  • 18
    • 0030941474 scopus 로고    scopus 로고
    • U11 snRNA interacts in vivo with the 5′ splice site of U12-dependent (AU-AC) introns
    • Kolossova, I., and Padgett, R.A. (1997). U11 snRNA interacts in vivo with the 5′ splice site of U12-dependent (AU-AC) introns. RNA 3, 227-233.
    • (1997) RNA , vol.3 , pp. 227-233
    • Kolossova, I.1    Padgett, R.A.2
  • 19
    • 0031915298 scopus 로고    scopus 로고
    • Relationship between "proto-splice sites" and intron phases: Evidence from dicodon analysis
    • Long, M., de Souza, S.J., Rosenberg, C., and Gilbert, W. (1998). Relationship between "proto-splice sites" and intron phases: evidence from dicodon analysis. Proc. Natl. Acad. Sci. USA 95, 219-223.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 219-223
    • Long, M.1    De Souza, S.J.2    Rosenberg, C.3    Gilbert, W.4
  • 20
    • 0029978019 scopus 로고    scopus 로고
    • PremRNA splicing in plants: Characterization of Ser/Arg splicing factors
    • Lopato, S., Mayeda, A., Krainer, A.R., and Barta, A. (1996). PremRNA splicing in plants: characterization of Ser/Arg splicing factors. Proc. Natl. Acad. Sci. USA 93, 3074-3079.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 3074-3079
    • Lopato, S.1    Mayeda, A.2    Krainer, A.R.3    Barta, A.4
  • 21
    • 0028556367 scopus 로고
    • Dynamic RNA-RNA interactions in the spliceosome
    • Madhani, H.D., and Guthrie, C. (1994). Dynamic RNA-RNA interactions in the spliceosome. Annu. Rev. Genet. 28, 1-26.
    • (1994) Annu. Rev. Genet. , vol.28 , pp. 1-26
    • Madhani, H.D.1    Guthrie, C.2
  • 23
    • 0024230675 scopus 로고
    • Additional low-abundance human small nuclear ribonucleoproteins: U11, U12, etc.
    • Montzka, K.A., and Steitz, J.A. (1988). Additional low-abundance human small nuclear ribonucleoproteins: U11, U12, etc. Proc. Natl. Acad. Sci. USA 85, 8885-8889.
    • (1988) Proc. Natl. Acad. Sci. USA , vol.85 , pp. 8885-8889
    • Montzka, K.A.1    Steitz, J.A.2
  • 24
    • 0024747748 scopus 로고
    • Mammalian U2 snRNP has a sequence-specific RNA-binding activity
    • Nelson, K.K., and Green, M.R. (1989). Mammalian U2 snRNP has a sequence-specific RNA-binding activity. Genes Dev. 3, 1562-1571.
    • (1989) Genes Dev. , vol.3 , pp. 1562-1571
    • Nelson, K.K.1    Green, M.R.2
  • 25
    • 0028205987 scopus 로고
    • Branch nucleophile selection in pre-mRNA splicing: Evidence for the bulged duplex model
    • Query, C.C., Moore, M.J., and Sharp, P.A. (1994). Branch nucleophile selection in pre-mRNA splicing: evidence for the bulged duplex model. Genes Dev. 8, 587-597.
    • (1994) Genes Dev. , vol.8 , pp. 587-597
    • Query, C.C.1    Moore, M.J.2    Sharp, P.A.3
  • 26
    • 0024808994 scopus 로고
    • The organization of 3′ splice-site sequences in mammalian introns
    • Reed, R. (1989). The organization of 3′ splice-site sequences in mammalian introns. Genes Dev. 3, 2113-2123.
    • (1989) Genes Dev. , vol.3 , pp. 2113-2123
    • Reed, R.1
  • 27
  • 28
    • 0026261876 scopus 로고
    • Five easy pieces
    • Sharp, P.A. (1991). "Five easy pieces." Science 254, 663.
    • (1991) Science , vol.254 , pp. 663
    • Sharp, P.A.1
  • 29
    • 0031456850 scopus 로고    scopus 로고
    • Classification of introns: U2-type or U12-type
    • Sharp, P.A., and Burge, C.B. (1997). Classification of introns: U2-type or U12-type. Cell 91, 875-879.
    • (1997) Cell , vol.91 , pp. 875-879
    • Sharp, P.A.1    Burge, C.B.2
  • 30
    • 0030925920 scopus 로고    scopus 로고
    • Pfam: A comprehensive database of protein domain families based on seed alignments
    • Sonnhammer, E.L., Eddy, S.R., and Durbin, R. (1997). Pfam: a comprehensive database of protein domain families based on seed alignments. Proteins 28, 405-420.
    • (1997) Proteins , vol.28 , pp. 405-420
    • Sonnhammer, E.L.1    Eddy, S.R.2    Durbin, R.3
  • 31
    • 0032571082 scopus 로고    scopus 로고
    • A putative voltage-gated sodium channel α subunit (PpSCN1) from the hydrozoan jellyfish, Polyorchis penicillatus: Structural comparisons and evolutionary considerations
    • Spafford, J.D., Spencer, A.N., and Gallin, W.J. (1998). A putative voltage-gated sodium channel α subunit (PpSCN1) from the hydrozoan jellyfish, Polyorchis penicillatus: structural comparisons and evolutionary considerations. Biochem. Biophys. Res. Comm. 244, 772-780.
    • (1998) Biochem. Biophys. Res. Comm. , vol.244 , pp. 772-780
    • Spafford, J.D.1    Spencer, A.N.2    Gallin, W.J.3
  • 32
    • 0021760026 scopus 로고
    • Computer methods to locate signals in nucleic acid sequences
    • Staden, R. (1984). Computer methods to locate signals in nucleic acid sequences. Nucleic Acids Res. 12, 505-519.
    • (1984) Nucleic Acids Res. , vol.12 , pp. 505-519
    • Staden, R.1
  • 34
    • 0027497515 scopus 로고
    • Molecular evolution of voltage-sensitive ion channel genes: On the origins of electrical excitability
    • Strong, M., Chandy, K.G., and Gutman, G.A. (1993). Molecular evolution of voltage-sensitive ion channel genes: on the origins of electrical excitability. Mol. Biol. Evol. 10, 221-242.
    • (1993) Mol. Biol. Evol. , vol.10 , pp. 221-242
    • Strong, M.1    Chandy, K.G.2    Gutman, G.A.3
  • 35
    • 0029863992 scopus 로고    scopus 로고
    • A novel spliceosome containing U11, U12, and U5 snRNPs excises a minor class (AT-AC) intron in vitro
    • Tarn, W.-Y., and Steitz, J.A. (1996a). A novel spliceosome containing U11, U12, and U5 snRNPs excises a minor class (AT-AC) intron in vitro. Cell 84, 801-811.
    • (1996) Cell , vol.84 , pp. 801-811
    • Tarn, W.-Y.1    Steitz, J.A.2
  • 36
    • 0029763477 scopus 로고    scopus 로고
    • Highly diverged U4 and U6 small nuclear RNAs required for splicing rare AT-AC introns
    • Tarn, W.-Y., and Steitz, J.A. (1996b). Highly diverged U4 and U6 small nuclear RNAs required for splicing rare AT-AC introns. Science 273, 1824-1832.
    • (1996) Science , vol.273 , pp. 1824-1832
    • Tarn, W.-Y.1    Steitz, J.A.2
  • 37
    • 0030995509 scopus 로고    scopus 로고
    • Pre-mRNA splicing: The discovery of a new spliceosome doubles the challenge
    • Tarn, W.-Y., and Steitz, J.A. (1997). Pre-mRNA splicing: the discovery of a new spliceosome doubles the challenge. Trends Biochem. Sci. 22, 132-137.
    • (1997) Trends Biochem. Sci. , vol.22 , pp. 132-137
    • Tarn, W.-Y.1    Steitz, J.A.2
  • 38
    • 0029348058 scopus 로고
    • U12 snRNA in vertebrates: Evolutionary conservation of 5′ sequences implicated in splicing of pre-mRNAs containing a minor class of introns
    • Tarn, W.-Y., Yario, T.A., and Steitz, J.A. (1995). U12 snRNA in vertebrates: evolutionary conservation of 5′ sequences implicated in splicing of pre-mRNAs containing a minor class of introns. RNA 1, 644-656.
    • (1995) RNA , vol.1 , pp. 644-656
    • Tarn, W.-Y.1    Yario, T.A.2    Steitz, J.A.3
  • 39
    • 0031436828 scopus 로고    scopus 로고
    • Evolutionary relationships among the eukaryotic crown taxa taking into account site-to-site rate variation in 18S rRNA
    • Van de Peer, Y., and De Wachter, R. (1997). Evolutionary relationships among the eukaryotic crown taxa taking into account site-to-site rate variation in 18S rRNA. J. Mol. Evol. 45, 619-630.
    • (1997) J. Mol. Evol. , vol.45 , pp. 619-630
    • Van De Peer, Y.1    De Wachter, R.2
  • 40
    • 0030575916 scopus 로고    scopus 로고
    • U1-mediated exon definition interactions between AT-AC and GT-AG introns
    • Wu, Q., and Krainer, A.R. (1996). U1-mediated exon definition interactions between AT-AC and GT-AG introns. Science 274, 1005-1008.
    • (1996) Science , vol.274 , pp. 1005-1008
    • Wu, Q.1    Krainer, A.R.2
  • 41
    • 12644306849 scopus 로고    scopus 로고
    • Splicing of a divergent subclass of AT-AC introns requires the major spliceosomal snRNAs
    • Wu, Q., and Krainer, A.R. (1997). Splicing of a divergent subclass of AT-AC introns requires the major spliceosomal snRNAs. RNA 3, 586-601.
    • (1997) RNA , vol.3 , pp. 586-601
    • Wu, Q.1    Krainer, A.R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.