-
1
-
-
0032247416
-
Evolutionary fates and origins of U12- type introns
-
Burge CB, Padgett RA, Sharp PA (1998) Evolutionary fates and origins of U12- type introns. Molecular Cell 2: 773-785.
-
(1998)
Molecular Cell
, vol.2
, pp. 773-785
-
-
Burge, C.B.1
Padgett, R.A.2
Sharp, P.A.3
-
2
-
-
0035476520
-
A computational scan for U12-dependent introns in the human genome sequence
-
Levine A, Durbin R (2001) A computational scan for U12-dependent introns in the human genome sequence. Nucleic Acids Research 29: 4006-4013.
-
(2001)
Nucleic Acids Research
, vol.29
, pp. 4006-4013
-
-
Levine, A.1
Durbin, R.2
-
4
-
-
33748581324
-
Comprehensive splice-site analysis using comparative genomics
-
Sheth N, Roca X, Hastings ML, Roeder T, Krainer AR, et al. (2006) Comprehensive splice-site analysis using comparative genomics. Nucleic Acids Research 34: 3955-3967.
-
(2006)
Nucleic Acids Research
, vol.34
, pp. 3955-3967
-
-
Sheth, N.1
Roca, X.2
Hastings, M.L.3
Roeder, T.4
Krainer, A.R.5
-
5
-
-
0344198459
-
The spliceosome: The most complex macromolecular machine in the cell?
-
Nilsen TW (2003) The spliceosome: the most complex macromolecular machine in the cell? Bioessays 25: 1147-1149.
-
(2003)
Bioessays
, vol.25
, pp. 1147-1149
-
-
Nilsen, T.W.1
-
6
-
-
0042671357
-
Pre-mRNA splicing: Awash in a sea of proteins
-
Jurica MS, Moore MJ (2003) Pre-mRNA splicing: awash in a sea of proteins. Molecular Cell 12: 5-14.
-
(2003)
Molecular Cell
, vol.12
, pp. 5-14
-
-
Jurica, M.S.1
Moore, M.J.2
-
7
-
-
0029989519
-
Requirement of U12 snRNA for in vivo splicing of a minor class of eukaryotic nuclear pre- mRNA introns
-
Hall SL, Padgett RA (1996) Requirement of U12 snRNA for in vivo splicing of a minor class of eukaryotic nuclear pre- mRNA introns. Science 271: 1716-1718.
-
(1996)
Science
, vol.271
, pp. 1716-1718
-
-
Hall, S.L.1
Padgett, R.A.2
-
8
-
-
0029863992
-
A novel spliceosome containing U11, U12 and U5 snRNPs excises a minor class (AT-AC) intron in vitro
-
Tarn W-Y, Steitz JA (1996) A novel spliceosome containing U11, U12 and U5 snRNPs excises a minor class (AT-AC) intron in vitro. Cell 84: 801-811.
-
(1996)
Cell
, vol.84
, pp. 801-811
-
-
Tarn, W.-Y.1
Steitz, J.A.2
-
9
-
-
0029763477
-
Highly divergent U4 and U6 small nuclear RNAs required for splicing rare AT-AC introns
-
Tarn W-Y, Steitz JA (1996) Highly divergent U4 and U6 small nuclear RNAs required for splicing rare AT-AC introns. Science 273: 1824-1832.
-
(1996)
Science
, vol.273
, pp. 1824-1832
-
-
Tarn, W.-Y.1
Steitz, J.A.2
-
10
-
-
0036240466
-
Human U4/U6.U5 and U4atac/U6atac.U5 Tri-snRNPs Exhibit Similar Protein Compositions
-
Schneider C, Will CL, Makarova OV, Makarov EM, Lührmann R (2002) Human U4/U6.U5 and U4atac/U6atac.U5 Tri-snRNPs Exhibit Similar Protein Compositions. Molecular and Cellular Biology 22: 3219-3229.
-
(2002)
Molecular and Cellular Biology
, vol.22
, pp. 3219-3229
-
-
Schneider, C.1
Will, C.L.2
Makarova, O.V.3
Makarov, E.M.4
Lührmann, R.5
-
11
-
-
2442690346
-
The human 18S U11/U12 snRNP contains a set of novel proteins not found in the U2-dependent spliceosome
-
Will CL, Schneider C, Hossbach M, Urlaub H, Rauhut R, et al. (2004) The human 18S U11/U12 snRNP contains a set of novel proteins not found in the U2-dependent spliceosome. RNA 10: 929-941.
-
(2004)
RNA
, vol.10
, pp. 929-941
-
-
Will, C.L.1
Schneider, C.2
Hossbach, M.3
Urlaub, H.4
Rauhut, R.5
-
12
-
-
0033119176
-
Initial recognition of U12-dependent introns requires both U11/59 splice-site and U12/branchpoint interactions
-
Frilander MJ, Steitz JA (1999) Initial recognition of U12-dependent introns requires both U11/59 splice-site and U12/branchpoint interactions. Genes & Development 13: 851-863.
-
(1999)
Genes & Development
, vol.13
, pp. 851-863
-
-
Frilander, M.J.1
Steitz, J.A.2
-
13
-
-
0030941474
-
U11 snRNA interacts in vivo with the 59 splice site of U12-dependent (AU-AC) pre-mRNA introns
-
Kolossova I, Padgett RA (1997) U11 snRNA interacts in vivo with the 59 splice site of U12-dependent (AU-AC) pre-mRNA introns. RNA 3: 227-233.
-
(1997)
RNA
, vol.3
, pp. 227-233
-
-
Kolossova, I.1
Padgett, R.A.2
-
14
-
-
0035104772
-
Dynamic Exchanges of RNA Interactions Leading to Catalytic Core Formation in the U12-Dependent Spliceosome
-
Frilander MJ, Steitz JA (2001) Dynamic Exchanges of RNA Interactions Leading to Catalytic Core Formation in the U12-Dependent Spliceosome. Molecular Cell 7: 217-226.
-
(2001)
Molecular Cell
, vol.7
, pp. 217-226
-
-
Frilander, M.J.1
Steitz, J.A.2
-
15
-
-
0030918785
-
Site-specific crosslinking of mammalian U11 and U6atac to the 59 splice site of an AT-AC intron
-
Yu Y-T, Steitz JA (1997) Site-specific crosslinking of mammalian U11 and U6atac to the 59 splice site of an AT-AC intron. Proceedings of the National Academy of Sciences USA 94: 6030-6035.
-
(1997)
Proceedings of the National Academy of Sciences USA
, vol.94
, pp. 6030-6035
-
-
Yu, Y.-T.1
Steitz, J.A.2
-
16
-
-
0037073946
-
Small nuclear ribonucleoprotein remodeling during catalytic activation of the spliceosome
-
Makarov EM, Makarova OV, Urlaub H, Gentzel M, Will CL, et al. (2002) Small nuclear ribonucleoprotein remodeling during catalytic activation of the spliceosome. Science 298: 2205-2208.
-
(2002)
Science
, vol.298
, pp. 2205-2208
-
-
Makarov, E.M.1
Makarova, O.V.2
Urlaub, H.3
Gentzel, M.4
Will, C.L.5
-
17
-
-
0032943029
-
Conservation of functional features of U6atac and U12 snRNAs between vertebrates and higher plants
-
Shukla GC, Padgett RA (1999) Conservation of functional features of U6atac and U12 snRNAs between vertebrates and higher plants. RNA 5: 525-538.
-
(1999)
RNA
, vol.5
, pp. 525-538
-
-
Shukla, G.C.1
Padgett, R.A.2
-
18
-
-
0036184249
-
The Divergent U12- Type Spliceosome Is Required for Pre-mRNA Splicing and Is Essential for Development in Drosophila
-
Otake LR, Scamborova P, Hashimoto C, Steitz JA (2002) The Divergent U12- Type Spliceosome Is Required for Pre-mRNA Splicing and Is Essential for Development in Drosophila. Molecular Cell 9: 439-446.
-
(2002)
Molecular Cell
, vol.9
, pp. 439-446
-
-
Otake, L.R.1
Scamborova, P.2
Hashimoto, C.3
Steitz, J.A.4
-
19
-
-
43249101441
-
The U11- 48K Protein Contacts the 59 Splice Site of U12-Type Introns and the U11-59K Protein
-
Turunen JJ, Will CL, Grote M, Lührmann R, Frilander MJ (2008) The U11- 48K Protein Contacts the 59 Splice Site of U12-Type Introns and the U11-59K Protein. Molecular and Cellular Biology 28: 3548-3560.
-
(2008)
Molecular and Cellular Biology
, vol.28
, pp. 3548-3560
-
-
Turunen, J.J.1
Will, C.L.2
Grote, M.3
Lührmann, R.4
Frilander, M.J.5
-
20
-
-
70350754211
-
Rates of in situ transcription and splicing in large human genes
-
Singh J, Padgett RA (2009) Rates of in situ transcription and splicing in large human genes. Nature Structural and Molecular Biology 16: 1128-1133.
-
(2009)
Nature Structural and Molecular Biology
, vol.16
, pp. 1128-1133
-
-
Singh, J.1
Padgett, R.A.2
-
21
-
-
0037099491
-
The splicing of U12-type introns can be a rate-limiting step in gene expression
-
Patel AA, McCarthy M, Steitz JA (2002) The splicing of U12-type introns can be a rate-limiting step in gene expression. The EMBO Journal 21: 3804-3815.
-
(2002)
The EMBO Journal
, vol.21
, pp. 3804-3815
-
-
Patel, A.A.1
McCarthy, M.2
Steitz, J.A.3
-
22
-
-
33749261487
-
The abundance of the spliceosomal snRNPs is not limiting the splicing of U12-type introns
-
Pessa HKJ, Ruokolainen A, Frilander MJ (2006) The abundance of the spliceosomal snRNPs is not limiting the splicing of U12-type introns. RNA 12: 1883-1892.
-
(2006)
RNA
, vol.12
, pp. 1883-1892
-
-
Pessa, H.K.J.1
Ruokolainen, A.2
Frilander, M.J.3
-
24
-
-
36049047997
-
Splicing Segregation: The Minor Spliceosome Acts outside the Nucleus and Controls Cell Proliferation
-
König H, Matter N, Bader R, Thiele W, Müller F (2007) Splicing Segregation: The Minor Spliceosome Acts outside the Nucleus and Controls Cell Proliferation. Cell 131: 718-729.
-
(2007)
Cell
, vol.131
, pp. 718-729
-
-
König, H.1
Matter, N.2
Bader, R.3
Thiele, W.4
Müller, F.5
-
25
-
-
47249165116
-
Minor spliceosome components are predominantly localized in the nucleus
-
Pessa HKJ, Will CL, Meng X, Schneider C, Watkins NJ, et al. (2008) Minor spliceosome components are predominantly localized in the nucleus. Proceedings of the National Academy of Sciences 105: 8655-8660.
-
(2008)
Proceedings of the National Academy of Sciences
, vol.105
, pp. 8655-8660
-
-
Pessa, H.K.J.1
Will, C.L.2
Meng, X.3
Schneider, C.4
Watkins, N.J.5
-
26
-
-
47949092128
-
Minor-class splicing occurs in the nucleus of the Xenopus oocyte
-
Friend K, Kolev NG, Shu M-D, Steitz JA (2008) Minor-class splicing occurs in the nucleus of the Xenopus oocyte. RNA 14: 1459-1462.
-
(2008)
RNA
, vol.14
, pp. 1459-1462
-
-
Friend, K.1
Kolev, N.G.2
Shu, M.-D.3
Steitz, J.A.4
-
27
-
-
77949559979
-
An ancient mechanism for splicing control: U11 snRNP as an activator of alternative splicing
-
Verbeeren J, Niemelä EH, Turunen JJ, Will CL, Ravantti JJ, et al. (2010) An ancient mechanism for splicing control: U11 snRNP as an activator of alternative splicing. Molecular Cell 37: 821-833.
-
(2010)
Molecular Cell
, vol.37
, pp. 821-833
-
-
Verbeeren, J.1
Niemelä, E.H.2
Turunen, J.J.3
Will, C.L.4
Ravantti, J.J.5
-
28
-
-
45549107558
-
U12 intron positions are more strongly conserved between animals and plants than U2 intron positions
-
Basu MK, Makalowski W, Rogozin IB, Koonin EV (2008) U12 intron positions are more strongly conserved between animals and plants than U2 intron positions. Biology Direct 3: 19.
-
(2008)
Biology Direct
, vol.3
, pp. 19
-
-
Basu, M.K.1
Makalowski, W.2
Rogozin, I.B.3
Koonin, E.V.4
-
29
-
-
34249696543
-
Discovery and Analysis of Evolutionarily Conserved Intronic Splicing Regulatory Elements
-
Yeo GW, Nostrand ELV, Liang TY (2007) Discovery and Analysis of Evolutionarily Conserved Intronic Splicing Regulatory Elements. PLoS Genet 3: e85.
-
(2007)
PLoS Genet
, vol.3
-
-
Yeo, G.W.1
Nostrand, E.L.V.2
Liang, T.Y.3
-
30
-
-
33846071878
-
U12DB: A database of orthologous U12-type spliceosomal introns
-
Alioto TS (2007) U12DB: a database of orthologous U12-type spliceosomal introns. Nucleic Acids Research 35: D110-115.
-
(2007)
Nucleic Acids Research
, vol.35
-
-
Alioto, T.S.1
-
31
-
-
3042791298
-
Identification of an evolutionarily divergent U11 small nuclear ribonucleoprotein particle in Drosophila
-
Schneider C, Will CL, Brosius J, Frilander MJ, Lührmann R (2004) Identification of an evolutionarily divergent U11 small nuclear ribonucleoprotein particle in Drosophila. Proceedings of the National Academy of Sciences USA 101: 9584-9589.
-
(2004)
Proceedings of the National Academy of Sciences USA
, vol.101
, pp. 9584-9589
-
-
Schneider, C.1
Will, C.L.2
Brosius, J.3
Frilander, M.J.4
Lührmann, R.5
-
33
-
-
0038005018
-
DAVID: Database for Annotation, Visualization, and Integrated Discovery
-
Dennis G Jr., Sherman BT, Hosack DA, Yang J, Gao W, et al. (2003) DAVID: Database for Annotation, Visualization, and Integrated Discovery. Genome Biol 4: P3.
-
(2003)
Genome Biol
, vol.4
-
-
Dennis Jr., G.1
Sherman, B.T.2
Hosack, D.A.3
Yang, J.4
Gao, W.5
-
34
-
-
61449172037
-
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
-
Huang da W, Sherman BT, Lempicki RA (2009) Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 4: 44-57.
-
(2009)
Nat Protoc
, vol.4
, pp. 44-57
-
-
da Huang, W.1
Sherman, B.T.2
Lempicki, R.A.3
-
35
-
-
61449172037
-
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
-
Huang DW, Sherman BT, Lempicki RA (2009) Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nature Protocols 4: 44-57.
-
(2009)
Nature Protocols
, vol.4
, pp. 44-57
-
-
Huang, D.W.1
Sherman, B.T.2
Lempicki, R.A.3
-
37
-
-
0034213904
-
Prohibitins act as a membrane-bound chaperone for the stabilization of mitochondrial proteins
-
Nijtmans LG, de Jong L, Artal Sanz M, Coates PJ, Berden JA, et al. (2000) Prohibitins act as a membrane-bound chaperone for the stabilization of mitochondrial proteins. EMBO J 19: 2444-2451.
-
(2000)
EMBO J
, vol.19
, pp. 2444-2451
-
-
Nijtmans, L.G.1
de Jong, L.2
Artal Sanz, M.3
Coates, P.J.4
Berden, J.A.5
-
38
-
-
77649085555
-
Gene expression in a Drosophila model of mitochondrial disease
-
Fernandez-Ayala DJ, Chen S, Kemppainen E, O'Dell KM, Jacobs HT (2010) Gene expression in a Drosophila model of mitochondrial disease. PLoS One 5: e8549.
-
(2010)
PLoS One
, vol.5
-
-
Fernandez-Ayala, D.J.1
Chen, S.2
Kemppainen, E.3
O'Dell, K.M.4
Jacobs, H.T.5
-
39
-
-
0031745936
-
Base pairing with U6atac snRNA is required for 59 splice site activation of U12-dependent introns in vivo
-
Incorvaia R, Padgett RA (1998) Base pairing with U6atac snRNA is required for 59 splice site activation of U12-dependent introns in vivo. RNA 4: 709-718.
-
(1998)
RNA
, vol.4
, pp. 709-718
-
-
Incorvaia, R.1
Padgett, R.A.2
-
40
-
-
27744541450
-
SnRNAs as the catalysts of pre-mRNA splicing
-
Valadkhan S (2005) snRNAs as the catalysts of pre-mRNA splicing. Current Opinion in Chemical Biology 9: 603-608.
-
(2005)
Current Opinion in Chemical Biology
, vol.9
, pp. 603-608
-
-
Valadkhan, S.1
-
41
-
-
0035909314
-
Splicing-related catalysis by protein-free snRNAs
-
Valadkhan S, Manley JL (2001) Splicing-related catalysis by protein-free snRNAs. Nature 413: 701-707.
-
(2001)
Nature
, vol.413
, pp. 701-707
-
-
Valadkhan, S.1
Manley, J.L.2
-
42
-
-
34247255773
-
Transcript Specificity in Yeast Pre-mRNA Splicing Revealed by Mutations in Core Spliceosomal Components
-
Pleiss JA, Whitworth GB, Bergkessel M, Guthrie C (2007) Transcript Specificity in Yeast Pre-mRNA Splicing Revealed by Mutations in Core Spliceosomal Components. PLoS Biology 5: e90.
-
(2007)
PLoS Biology
, vol.5
-
-
Pleiss, J.A.1
Whitworth, G.B.2
Bergkessel, M.3
Guthrie, C.4
-
43
-
-
0037012922
-
Genomewide Analysis of mRNA Processing in Yeast Using Splicing-Specific Microarrays
-
Clark TA, Sugnet CW, Ares M Jr. (2002) Genomewide Analysis of mRNA Processing in Yeast Using Splicing-Specific Microarrays. Science 296: 907-910.
-
(2002)
Science
, vol.296
, pp. 907-910
-
-
Clark, T.A.1
Sugnet, C.W.2
Ares Jr., M.3
-
44
-
-
0031860890
-
Prohibitin family members interact genetically with mitochondrial inheritance components in Saccharomyces cerevisiae
-
Berger KH, Yaffe MP (1998) Prohibitin family members interact genetically with mitochondrial inheritance components in Saccharomyces cerevisiae. Mol Cell Biol 18: 4043-4052.
-
(1998)
Mol Cell Biol
, vol.18
, pp. 4043-4052
-
-
Berger, K.H.1
Yaffe, M.P.2
-
45
-
-
0032954927
-
Prohibitins regulate membrane protein degradation by the m-AAA protease in mitochondria
-
Steglich G, Neupert W, Langer T (1999) Prohibitins regulate membrane protein degradation by the m-AAA protease in mitochondria. Mol Cell Biol 19: 3435-3442.
-
(1999)
Mol Cell Biol
, vol.19
, pp. 3435-3442
-
-
Steglich, G.1
Neupert, W.2
Langer, T.3
-
46
-
-
12644278298
-
The prohibitin family of mitochondrial proteins regulate replicative lifespan
-
Coates PJ, Jamieson DJ, Smart K, Prescott AR, Hall PA (1997) The prohibitin family of mitochondrial proteins regulate replicative lifespan. Curr Biol 7: 607-610.
-
(1997)
Curr Biol
, vol.7
, pp. 607-610
-
-
Coates, P.J.1
Jamieson, D.J.2
Smart, K.3
Prescott, A.R.4
Hall, P.A.5
-
47
-
-
0023046975
-
Sequence and expression of the Cc gene, a member of the dopa decarboxylase gene cluster of Drosophila: Possible translational regulation
-
Eveleth DD Jr., Marsh JL (1986) Sequence and expression of the Cc gene, a member of the dopa decarboxylase gene cluster of Drosophila: possible translational regulation. Nucleic Acids Res 14: 6169-6183.
-
(1986)
Nucleic Acids Res
, vol.14
, pp. 6169-6183
-
-
Eveleth Jr., D.D.1
Marsh, J.L.2
-
48
-
-
56349102165
-
Prohibitin function within mitochondria: Essential roles for cell proliferation and cristae morphogenesis
-
Merkwirth C, Langer T (2009) Prohibitin function within mitochondria: essential roles for cell proliferation and cristae morphogenesis. Biochim Biophys Acta 1793: 27-32.
-
(2009)
Biochim Biophys Acta
, vol.1793
, pp. 27-32
-
-
Merkwirth, C.1
Langer, T.2
-
49
-
-
36349019368
-
Mitochondrial type-I prohibitins of Arabidopsis thaliana are required for supporting proficient meristem development
-
Van Aken O, Pecenkova T, van de Cotte B, De Rycke R, Eeckhout D, et al. (2007) Mitochondrial type-I prohibitins of Arabidopsis thaliana are required for supporting proficient meristem development. Plant J 52: 850-864.
-
(2007)
Plant J
, vol.52
, pp. 850-864
-
-
Van Aken, O.1
Pecenkova, T.2
van de Cotte, B.3
De Rycke, R.4
Eeckhout, D.5
-
50
-
-
40449109413
-
Transcriptional profiling of MnSOD-mediated lifespan extension in Drosophila reveals a speciesgeneral network of aging and metabolic genes
-
Curtis C, Landis GN, Folk D, Wehr NB, Hoe N, et al. (2007) Transcriptional profiling of MnSOD-mediated lifespan extension in Drosophila reveals a speciesgeneral network of aging and metabolic genes. Genome Biol 8: R262.
-
(2007)
Genome Biol
, vol.8
-
-
Curtis, C.1
Landis, G.N.2
Folk, D.3
Wehr, N.B.4
Hoe, N.5
-
51
-
-
0032883802
-
The Berkeley Drosophila Genome Project gene disruption project: Single P-element insertions mutating 25% of vital Drosophila genes
-
Spradling AC, Stern D, Beaton A, Rhem EJ, Laverty T, et al. (1999) The Berkeley Drosophila Genome Project gene disruption project: Single P-element insertions mutating 25% of vital Drosophila genes. Genetics 153: 135-177.
-
(1999)
Genetics
, vol.153
, pp. 135-177
-
-
Spradling, A.C.1
Stern, D.2
Beaton, A.3
Rhem, E.J.4
Laverty, T.5
-
52
-
-
67849095416
-
BioMart Central Portal-unified access to biological data
-
Haider S, Ballester B, Smedley D, Zhang J, Rice P, et al. (2009) BioMart Central Portal-unified access to biological data. Nucleic Acids Research 37: W23-W27.
-
(2009)
Nucleic Acids Research
, vol.37
-
-
Haider, S.1
Ballester, B.2
Smedley, D.3
Zhang, J.4
Rice, P.5
-
53
-
-
33644872577
-
Limma: Linear models for microarray data
-
In: Gentleman R, Carey V, Dudoit S, Irizarry R, Huber W, eds., New York: Springer
-
Smyth G (2004) Limma: linear models for microarray data. In: Gentleman R, Carey V, Dudoit S, Irizarry R, Huber W, eds. Bioinformatics and Computational Biology Solutions using R and Bioconductor. New York: Springer. pp 398-420.
-
(2004)
Bioinformatics and Computational Biology Solutions using R and Bioconductor
, pp. 398-420
-
-
Smyth, G.1
-
54
-
-
34249318065
-
Preprocessing Agilent microarray data
-
Zahurak M, Parmigiani G, Yu W, Scharpf R, Berman D, et al. (2007) Preprocessing Agilent microarray data. BMC Bioinformatics 8: 142.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 142
-
-
Zahurak, M.1
Parmigiani, G.2
Yu, W.3
Scharpf, R.4
Berman, D.5
-
55
-
-
0037316303
-
A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
-
Bolstad BM, Irizarry RA, Astrand M, Speed TP (2003) A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 19: 185-193.
-
(2003)
Bioinformatics
, vol.19
, pp. 185-193
-
-
Bolstad, B.M.1
Irizarry, R.A.2
Astrand, M.3
Speed, T.P.4
|