Coiled bodies preferentially associate with U4, U11, and U12 small nuclear RNA genes in interphase hela cells but not with U6 and U7 genes

Molecular Biology of the Cell

Volumn 10, Issue 5, 1999, Pages 1653-1663

  Jacobs, Erica Y ^a   Frey, Mark R ^a   Wu, Wei ^a   Ingledue, Thomas C ^b   Gebuhr, Thomas C ^a   Gao, Liming ^a   Marzluff, William F ^b   Matera, A Gregory ^a  

^a UNIVERSITY HOSPITALS OF CLEVELAND   (United States)

^b UNIVERSITY OF NORTH CAROLINA SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; MESSENGER RNA PRECURSOR; SMALL NUCLEAR RNA;

ANIMAL CELL; ARTICLE; FLUORESCENCE IN SITU HYBRIDIZATION; GENE EXPRESSION REGULATION; HELA CELL; HUMAN; HUMAN CELL; INTERPHASE; NONHUMAN; NUCLEOTIDE SEQUENCE; OOCYTE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RNA METABOLISM; XENOPUS;

ANIMALIA;

EID: 0032952059     PISSN: 10591524     EISSN: None     Source Type: Journal    
DOI: 10.1091/mbc.10.5.1653     Document Type: Article

References (44)

1. Andrade, L.E.C., Tan, E.M., and Chan, E.K.L. (1993). Immunocytochemical analysis of the coiled body in the cell cycle and during cell proliferation. Proc. Natl. Acad. Sci. USA 90, 1947-1951.
2. Anisari-Lari, M.A., Shen, Y., Muzny, D.M., Lee, W., and Gibbs, R.A. (1997). Large-scale sequencing in human chromosome 12p13: experimental and computational gene structure determination. Genome Res. 7, 268-280.
3. Ballard, S.G., and Ward, D.C. (1993). Fluorescence in situ hybridization using digital imaging microscopy. J. Histochem. Cytochem. 41, 1755-1759.
4. Bark, C., Weller, P., Zabielski, J., and Pettersson, U. (1986). Genes for human U4 small nuclear RNA. Gene 50, 333-344.
5. Bauer, D.W., Murphy, C., Wu, Z.W., Wu, C.H.H., and Gall, J.G. (1994). In vitro assembly of coiled bodies in Xenopus egg extract. Mol. Biol. Cell 5, 633-644.
6. Bell, P., Dabauvalle, M.-C., and Scheer, U. (1992). In vitro assembly of prenucleolar bodies in Xenopus egg extract. J. Cell Biol. 118, 1297-1304.
7. Bentley, D.L., and Groudine, M. (1988). Sequence requirements for premature termination of transcription in the human c-myc gene. Cell 53, 245-256.
8. Callan, H.G., and Gall, J.G. (1991). Association of RNA with the B and C snurposomes of Xenopus oocyte nuclei. Chromosoma 101, 69-82.
9. Callan, H.G., Gall, J.G., and Murphy, C. (1991). Histone genes are located at the sphere loci of Xenopus lampbrush chromosomes. Chromosoma 101, 245-251.
10. Carmo-Fonseca, M., Ferreira, J., and Lamond, A.I. (1993). Assembly of snRNP-containing coiled bodies is regulated in interphase and mitosis - evidence that the coiled body is a kinetic nuclear structure. J. Cell Biol. 120, 841-852.
11. Deloukas, P., et al. (1998). A physical map of 30,000 human genes. Science 282, 744-746.
12. Fakan, S., and Bernhard, W. (1971). Localization of rapidly and slowly labeled nuclear RNA as visualized by high resolution autoradiography. Exp. Cell Res. 67, 129-141.
13. Ferreira, J.A., Carmo-Fonseca, M., and Lamond, A.I. (1994). Differential interaction of splicing snRNPs with coiled bodies and interchromatin granules during mitosis and assembly of daughter cell nuclei. J. Cell Biol. 126, 11-23.
14. Fischer, U., Liu, Q., and Dreyfuss, G. (1997). The SMN-SIP1 complex has an essential role in spliceosomal snRNP biogenesis. Cell 90, 1023-1029.
15. Frey, M.R., Bailey, A.D., Weiner, A.M., and Matera, A.G. (1999). Association of snRNA genes with coiled bodies is mediated by nascent snRNA transcripts. Curr. Biol. 9, 126-135.
16. Frey, M.R., and Matera, A.G. (1995). Coiled bodies contain U7 small nuclear RNA and associate with specific DNA sequences in interphase cells. Proc. Natl. Acad. Sci. USA 92, 5915-5919.
17. Gall, J.G., Stephenson, E.C., Erba, H.P., Diaz, M.O., and Barsacchi-Pilone, G. (1981). Histone genes are located at the sphere loci of newt lampbrush chromosomes. Chromosoma 84, 159-171.
18. Gao, L., Frey, M.R., and Matera, A.G. (1997). Human genes encoding U3 snRNA associate with coiled bodies in interphase cells and are clustered on chromosome 17p11.2 in a complex inverted repeat structure. Nucleic Acids Res. 25, 4740-4747.
19. Hudson, T., Stein, L., Gerety, S., Ma, J., Castle, A., Silva, J., Slonim, D., Baptista, R., Kruglyak, L., and Xu, S. (1995). An STS-based map of the human genome. Science 270, 1945-1954.
20. Issac, C., Yang, Y., and Meier, U.T. (1998). Nopp140 functions as a molecular link between the nucleolus and the coiled bodies. J. Cell Biol. 142, 407-417.
21. Jordan, P., Cunha, C., and Carmo-Fonseca, M. (1997). The cdk7-cyclin H-MAT1 complex associated with TFIIH is localized in coiled bodies. Mol. Biol. Cell 8, 1207-1217.
22. Kunkel, G.R., and Pederson, T. (1988). Upstream elements required for efficient transcription of a human U6 RNA gene resemble those of U1 and U2 genes even though a different polymerase is used. Genes & Dev. 2, 196-204.
23. Lamond, A.I., and Earnshaw, W.C. (1998). Structure and function in the nucleus. Science 280, 547-553.
24. Liu, Q., Fischer, U., Wang, F., and Dreyfuss, G. (1997). The spinal muscular atrophy disease gene product, SMN, and its associated protein SIP1 are in a complex with spliceosomal snRNP proteins. Cell 90, 1013-1021.
25. Lyon, C.E., Bohmann, K., Sleeman, J., and Lamond, A.I. (1997). Inhibition of protein dephosphorylation results in the accumulation of splicing snRNPs and coiled bodies within the nucleolus. Exp. Cell Res. 230, 84-93.
26. Matera, A.G. (1998). Of coiled bodies, gems, and salmon. J. Cell. Biochem. 70, 181-192.
27. Matera, A.G. (1999). RNA splicing: more clues from spinal muscular atrophy. Curr. Biol. 9, R140-R142.
28. Middleton, K.M., and Morgan, G.T. (1990). Premature termination of transcription can be induced on an injected α-tubulin gene in Xenopus oocytes. Mol. Cell. Biol. 10, 727-735.
29. Mowry, K.L., and Steitz, J.A. (1987). Identification of the human U7 snRNP as one of several factors involved in the 3′ end maturation of histone premessenger RNAs. Science 238, 1682-1687.
30. Nadeau, J.H., and Sankoff, D. (1998). Counting on comparative maps. Trends Genet. 14, 495-501.
31. Nagafuchi, S., Yanagisawa, H., Ohsaki, E., Shirayama, T., Tadokoro, K., Inoue, T., and Yamada, M. (1994). Structure and expression of the gene responsible for the triplet repeat disorder, dentatorubral and pallidolusian atrophy (DRPLA). Nat. Genet. 8, 177-182.
32. Pan, Z.-Q., and Prives, C. (1988). Assembly of functional U1 and U2 human-amphibian hybrid snRNPs in Xenopus laevis oocytes. Science 241, 1328-1331.
33. Pellizzoni, L., Kataoka, N., Charroux, B., and Dreyfuss, G. (1998). A novel function for SMN, the spinal muscular atrophy disease gene product, in premRNA splicing. Cell 95, 615-624.
34. Scharl, E.C., and Steitz, J.A. (1996). Length suppression in histone mRNA 3′-end maturation: processing defects of insertion mutant premessenger RNAs can be compensated by insertions into the U7 small nuclear RNA. Proc. Natl. Acad. Sci. USA 93, 14659-14664.
35. Schul, W. (1998). The Spatial and Functional Organization of Transcription and RNA Processing in Relation to Nuclear Domains. Ph.D. Thesis. Amsterdam: University of Amsterdam.
36. Schul, W., van Driel, R., and de Jong, L. (1998). Coiled bodies and U2 snRNA genes adjacent to coiled bodies are enriched in factors required for snRNA transcription. Mol. Biol. Cell 9, 1025-1036.
37. Sleeman, J., Lyon, C.E., Platani, M., Kreivi, J.-P., and Lamond, A.I. (1998). Dynamic interactions between splicing snRNPs, coiled bodies and nucleoli revealed using snRNP protein fusions to the green fluorescent protein. Exp. Cell Res. 243, 290-304.
38. Smith, K.P., Carter, K.C., Johnson, C.V., and Lawrence, J.B. (1995). U2 and U1 snRNA gene loci associate with coiled bodies. J. Cell. Biochem. 59, 473-485.
39. Suter-Crazzolara, C., and Keller, W. (1991). Organization and transient expression of the gene for human U11 snRNA. Gene Expr. 1, 91-102.
40. Tarn, W.Y., Yario, T.A., and Steitz, J.A. (1995). U12 snRNA in vertebrates: evolutionary conservation of 5′ sequences implicated in splicing of premRNAs containing a minor class of introns. RNA 1, 644-656.
41. Turner, P.C., Whalen, A., Schümperli, D., and Matera, A.G. (1996). The bona fide mouse U7 snRNA gene maps to a different chromosome than two U7 pseudogenes. Genomics 31, 250-252.
42. Wang, Z.-F., Ingledue, T.C., Dominski, Z., Sanchez, R., and Marzluff, W.F. (1999). Two Xenopus proteins that bind the 3′ end of histone mRNA: implications for translational control of histone synthesis during oogenesis. Mol. Cell. Biol. 29, 835-845.
43. Williams, A.S., Ingledue, T.C., Kay, B.K., and Marzluff, W.F. (1994). Changes in the stem-loop at the 3′ terminus of histone mRNA affects its nucleocytoplasmic transport and cytoplasmic regulation. Nucleic Acids Res. 22, 4660-4666.
44. Yu, Y.T., Tarn, W.Y., Yario, T.A., and Steitz, J.A. (1996). More Sm snRNAs from vertebrate cells. Exp. Cell Res. 229, 276-281.