메뉴 건너뛰기




Volumn 8, Issue 3, 2012, Pages 344-352

U12-type spliceosomal introns of insecta

Author keywords

U12 type introns minor spliceosome insect evolution

Indexed keywords

INSECT PROTEIN; SMALL NUCLEAR RNA; U12 SMALL NUCLEAR RNA;

EID: 84863241687     PISSN: 14492288     EISSN: None     Source Type: Journal    
DOI: 10.7150/ijbs.3933     Document Type: Article
Times cited : (8)

References (47)
  • 1
    • 0018263844 scopus 로고
    • Why genes in pieces?
    • Gilbert W. Why genes in pieces? Nature. 1978; 271: 501.
    • (1978) Nature , vol.271 , pp. 501
    • Gilbert, W.1
  • 2
    • 0018758145 scopus 로고
    • Split genes and RNA splicing
    • Crick F. Split genes and RNA splicing. Science. 1979; 204: 264-71.
    • (1979) Science , vol.204 , pp. 264-271
    • Crick, F.1
  • 3
    • 0001468848 scopus 로고    scopus 로고
    • Splicing of precursors to mRNAs by the Spliceosome
    • In: Gesteland RF Cech TR Atkins JF editors, New York USA: Cold Spring Harbor Laboratory Press
    • Burge CB, Tuschl T. and Sharp P.A. Splicing of precursors to mRNAs by the Spliceosome. In: Gesteland RF Cech TR Atkins JF editors. RNA world. New York USA: Cold Spring Harbor Laboratory Press. 1999: 525-60.
    • (1999) RNA World , pp. 525-560
    • Burge, C.B.1    Tuschl, T.2    Sharp, P.A.3
  • 5
    • 80455144530 scopus 로고    scopus 로고
    • Spliceosome structure and function
    • doi:cshperspect.a003707 [pii]10.1101/cshperspect.a003707
    • Will CL, Luhrmann R. Spliceosome structure and function. Cold Spring Harb Perspect Biol. 2011; doi:cshperspect.a003707 [pii]10.1101/cshperspect.a003707.
    • (2011) Cold Spring Harb Perspect Biol
    • Will, C.L.1    Luhrmann, R.2
  • 6
    • 60349104299 scopus 로고    scopus 로고
    • The spliceosome: Design principles of a dynamic RNP machine
    • doi:S0092-8674(09)00146-9 [pii]10.1016/j.cell.2009.02.009
    • Wahl MC, Will CL, Luhrmann R. The spliceosome: design principles of a dynamic RNP machine. Cell. 2009; 136: 701-18. doi:S0092-8674(09)00146-9 [pii]10.1016/j.cell.2009.02.009.
    • (2009) Cell , vol.136 , pp. 701-718
    • Wahl, M.C.1    Will, C.L.2    Luhrmann, R.3
  • 7
    • 0032247416 scopus 로고    scopus 로고
    • Evolutionary fates and origins of U12-type introns
    • doi:S1097-2765(00)80292-0 [pii]
    • Burge CB, Padgett RA, Sharp PA. Evolutionary fates and origins of U12-type introns. Mol Cell. 1998; 2: 773-85. doi:S1097-2765(00)80292-0 [pii].
    • (1998) Mol Cell , vol.2 , pp. 773-785
    • Burge, C.B.1    Padgett, R.A.2    Sharp, P.A.3
  • 8
    • 0028366003 scopus 로고
    • Conserved sequences in a class of rare eukaryotic nuclear introns with non-consensus splice sites
    • doi:S0022-2836(84)71377-5 [pii]10.1006/jmbi.1994.1377
    • Hall SL, Padgett RA. Conserved sequences in a class of rare eukaryotic nuclear introns with non-consensus splice sites. J Mol Biol. 1994; 239: 357-65. doi:S0022-2836(84)71377-5 [pii]10.1006/jmbi.1994.1377.
    • (1994) J Mol Biol , vol.239 , pp. 357-365
    • Hall, S.L.1    Padgett, R.A.2
  • 9
    • 0029863992 scopus 로고    scopus 로고
    • A novel spliceosome containing U11 U12 and U5 snRNPs excises a minor class (AT-AC) intron in vitro
    • doi:S0092-8674(00)81057-0 [pii]
    • Tarn WY, Steitz JA. A novel spliceosome containing U11 U12 and U5 snRNPs excises a minor class (AT-AC) intron in vitro. Cell. 1996; 84: 801-11. doi:S0092-8674(00)81057-0 [pii].
    • (1996) Cell , vol.84 , pp. 801-811
    • Tarn, W.Y.1    Steitz, J.A.2
  • 10
    • 0029763477 scopus 로고    scopus 로고
    • Highly diverged U4 and U6 small nuclear RNAs required for splicing rare AT-AC introns
    • Tarn WY, Steitz JA. Highly diverged U4 and U6 small nuclear RNAs required for splicing rare AT-AC introns. Science. 1996; 273: 1824-32.
    • (1996) Science , vol.273 , pp. 1824-1832
    • Tarn, W.Y.1    Steitz, J.A.2
  • 11
    • 0034743971 scopus 로고    scopus 로고
    • Role of the 3' splice site in U12-dependent intron splicing
    • doi:10.1128/MCB.21.6.1942-1952.2001
    • Dietrich RC, Peris MJ, Seyboldt AS, Padgett RA. Role of the 3' splice site in U12-dependent intron splicing. Mol Cell Biol. 2001; 21: 1942-52. doi:10.1128/MCB.21.6.1942-1952.2001.
    • (2001) Mol Cell Biol , vol.21 , pp. 1942-1952
    • Dietrich, R.C.1    Peris, M.J.2    Seyboldt, A.S.3    Padgett, R.A.4
  • 12
    • 11444258520 scopus 로고    scopus 로고
    • An LKB1 AT-AC intron mutation causes Peutz-Jeghers syndrome via splicing at noncanonical cryptic splice sites
    • doi:nsmb873 [pii]10.1038/nsmb873
    • Hastings ML, Resta N, Traum D, Stella A, Guanti G, Krainer AR. An LKB1 AT-AC intron mutation causes Peutz-Jeghers syndrome via splicing at noncanonical cryptic splice sites. Nat Struct Mol Biol. 2005; 12: 54-9. doi:nsmb873 [pii]10.1038/nsmb873.
    • (2005) Nat Struct Mol Biol , vol.12 , pp. 54-59
    • Hastings, M.L.1    Resta, N.2    Traum, D.3    Stella, A.4    Guanti, G.5    Krainer, A.R.6
  • 13
    • 0035476520 scopus 로고    scopus 로고
    • A computational scan for U12-dependent introns in the human genome sequence
    • Levine A, Durbin R. A computational scan for U12-dependent introns in the human genome sequence. Nucleic Acids Res. 2001; 29: 4006-13.
    • (2001) Nucleic Acids Res , vol.29 , pp. 4006-4013
    • Levine, A.1    Durbin, R.2
  • 14
    • 77749310993 scopus 로고    scopus 로고
    • Evolutionary dynamics of U12-type spliceosomal introns
    • doi:1471-2148-10-47 [pii]10.1186/1471-2148-10-47
    • Lin CF, Mount SM, Jarmolowski A, Makalowski W. Evolutionary dynamics of U12-type spliceosomal introns. BMC Evol Biol. 2010; 10: 47. doi:1471-2148-10-47 [pii]10.1186/1471-2148-10-47.
    • (2010) BMC Evol Biol , vol.10 , pp. 47
    • Lin, C.F.1    Mount, S.M.2    Jarmolowski, A.3    Makalowski, W.4
  • 15
    • 0030995509 scopus 로고    scopus 로고
    • Pre-mRNA splicing: The discovery of a new spliceosome doubles the challenge
    • doi:S0968000497010189 [pii]
    • Tarn WY, Steitz JA. Pre-mRNA splicing: the discovery of a new spliceosome doubles the challenge. Trends Biochem Sci. 1997; 22: 132-7. doi:S0968000497010189 [pii].
    • (1997) Trends Biochem Sci , vol.22 , pp. 132-137
    • Tarn, W.Y.1    Steitz, J.A.2
  • 16
    • 54849437046 scopus 로고    scopus 로고
    • Primordial spliceosomal introns were probably U2-type
    • doi:S0168-9525(08)00230-8 [pii]10.1016/j.tig.2008.09.002
    • Basu MK, Rogozin IB, Koonin EV. Primordial spliceosomal introns were probably U2-type. Trends Genet. 2008; 24: 525-8. doi:S0168-9525(08)00230-8 [pii]10.1016/j.tig.2008.09.002.
    • (2008) Trends Genet , vol.24 , pp. 525-528
    • Basu, M.K.1    Rogozin, I.B.2    Koonin, E.V.3
  • 17
    • 0031456850 scopus 로고    scopus 로고
    • Classification of introns: U2-type or U12-type
    • doi:S0092-8674(00)80479-1 [pii]
    • Sharp PA, Burge CB. Classification of introns: U2-type or U12-type. Cell. 1997; 91: 875-9. doi:S0092-8674(00)80479-1 [pii].
    • (1997) Cell , vol.91 , pp. 875-879
    • Sharp, P.A.1    Burge, C.B.2
  • 18
    • 44349155377 scopus 로고    scopus 로고
    • Computational screen for spliceosomal RNA genes aids in defining the phylogenetic distribution of major and minor spliceosomal components
    • doi:gkn142 [pii]10.1093/nar/gkn142
    • Davila Lopez M, Rosenblad MA, Samuelsson T. Computational screen for spliceosomal RNA genes aids in defining the phylogenetic distribution of major and minor spliceosomal components. Nucleic Acids Res. 2008; 36: 3001-10. doi:gkn142 [pii]10.1093/nar/gkn142.
    • (2008) Nucleic Acids Res , vol.36 , pp. 3001-3010
    • Davila, L.M.1    Rosenblad, M.A.2    Samuelsson, T.3
  • 20
    • 33846071878 scopus 로고    scopus 로고
    • U12DB: A database of orthologous U12-type spliceosomal introns
    • doi:gkl796 [pii]10.1093/nar/gkl796
    • Alioto TS. U12DB: a database of orthologous U12-type spliceosomal introns. Nucleic Acids Res. 2007; 35: D110-5. doi:gkl796 [pii]10.1093/nar/gkl796.
    • (2007) Nucleic Acids Res , vol.35
    • Alioto, T.S.1
  • 21
    • 33845873071 scopus 로고    scopus 로고
    • Spliceosomal small nuclear RNA genes in 11 insect genomes
    • doi:rna.259207 [pii]10.1261/rna.259207
    • Mount SM, Gotea V, Lin CF, Hernandez K, Makalowski W. Spliceosomal small nuclear RNA genes in 11 insect genomes. RNA. 2007; 13: 5-14. doi:rna.259207 [pii]10.1261/rna.259207.
    • (2007) RNA , vol.13 , pp. 5-14
    • Mount, S.M.1    Gotea, V.2    Lin, C.F.3    Hernandez, K.4    Makalowski, W.5
  • 22
    • 0025183708 scopus 로고
    • Basic local alignment search tool
    • doi:10.1006/jmbi.1990.9999S0022283680799990 [pii]
    • Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. Basic local alignment search tool. J Mol Biol. 1990; 215: 403-10. doi:10.1006/jmbi.1990.9999S0022283680799990 [pii].
    • (1990) J Mol Biol , vol.215 , pp. 403-410
    • Altschul, S.F.1    Gish, W.2    Miller, W.3    Myers, E.W.4    Lipman, D.J.5
  • 23
    • 0037045398 scopus 로고    scopus 로고
    • ORF-FINDER: A vector for high-throughput gene identification
    • doi:S0378111901008198 [pii]
    • Rombel IT, Sykes KF, Rayner S, Johnston SA. ORF-FINDER: a vector for high-throughput gene identification. Gene. 2002; 282: 33-41. doi:S0378111901008198 [pii].
    • (2002) Gene , vol.282 , pp. 33-41
    • Rombel, I.T.1    Sykes, K.F.2    Rayner, S.3    Johnston, S.A.4
  • 26
    • 0034623005 scopus 로고    scopus 로고
    • T-Coffee: A novel method for fast and accurate multiple sequence alignment
    • doi:10.1006/jmbi.2000.4042 S0022-2836(00)94042-7 [pii]
    • Notredame C, Higgins DG, Heringa J. T-Coffee: A novel method for fast and accurate multiple sequence alignment. J Mol Biol. 2000; 302: 205-17. doi:10.1006/jmbi.2000.4042 S0022-2836(00)94042-7 [pii].
    • (2000) J Mol Biol , vol.302 , pp. 205-217
    • Notredame, C.1    Higgins, D.G.2    Heringa, J.3
  • 27
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A userfriendly biological sequence alignment editor and analysis program for windows 95/98 NT
    • Hall TA. BioEdit: a userfriendly biological sequence alignment editor and analysis program for windows 95/98 NT. Nucleic Acids Symposium Series. 1999; 41: 95-8.
    • (1999) Nucleic Acids Symposium Series , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 28
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • doi:nprot.2008.211 [pii] 10.1038/nprot.2008.211
    • Huang da W, Sherman BT, Lempicki RA. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc. 2009; 4: 44-57. doi:nprot.2008.211 [pii] 10.1038/nprot.2008.211.
    • (2009) Nat Protoc , vol.4 , pp. 44-57
    • da Huang, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 29
    • 33750460281 scopus 로고    scopus 로고
    • Insights into social insects from the genome of the honeybee Apis mellifera
    • Honeybee Genome Sequencing Consortium
    • Honeybee Genome Sequencing Consortium. Insights into social insects from the genome of the honeybee Apis mellifera. Nature. 2006; 443: 931-49.
    • (2006) Nature , vol.443 , pp. 931-949
  • 30
    • 0014993958 scopus 로고
    • Reptitive DNA sequences in drosophila
    • Gall JG, Cohen EH, Polan ML. Reptitive DNA sequences in drosophila. Chromosoma. 1971; 33: 319-44.
    • (1971) Chromosoma , vol.33 , pp. 319-344
    • Gall, J.G.1    Cohen, E.H.2    Polan, M.L.3
  • 31
    • 0015954275 scopus 로고
    • The satellite bands of the DNA of Drosophila virilis
    • Schweber MS. The satellite bands of the DNA of Drosophila virilis. Chromosoma. 1974; 44: 371-82.
    • (1974) Chromosoma , vol.44 , pp. 371-382
    • Schweber, M.S.1
  • 32
    • 0033736054 scopus 로고    scopus 로고
    • Drosophila virilis has long and highly polymorphic microsatellites
    • Schlotterer C, Harr B. Drosophila virilis has long and highly polymorphic microsatellites. Mol Biol Evol. 2000; 17: 1641-6.
    • (2000) Mol Biol Evol , vol.17 , pp. 1641-1646
    • Schlotterer, C.1    Harr, B.2
  • 33
    • 50049084052 scopus 로고    scopus 로고
    • Genome size diversity in the family Drosophilidae
    • doi:hdy200849 [pii] 10.1038/hdy.2008.49
    • Gregory TR, Johnston JS. Genome size diversity in the family Drosophilidae. Heredity. 2008; 101: 228-38. doi:hdy200849 [pii] 10.1038/hdy.2008.49.
    • (2008) Heredity , vol.101 , pp. 228-238
    • Gregory, T.R.1    Johnston, J.S.2
  • 36
    • 34250902354 scopus 로고    scopus 로고
    • Genome sequence of Aedes aegypti, a major arbovirus vector
    • doi:1138878 [pii] 10.1126/science.1138878
    • Nene V, Wortman JR, Lawson D, Haas B, Kodira C, Tu ZJ, et al. Genome sequence of Aedes aegypti, a major arbovirus vector. Science. 2007; 316: 1718-23. doi:1138878 [pii] 10.1126/science.1138878.
    • (2007) Science , vol.316 , pp. 1718-1723
    • Nene, V.1    Wortman, J.R.2    Lawson, D.3    Haas, B.4    Kodira, C.5    Tu, Z.J.6
  • 37
    • 0032933429 scopus 로고    scopus 로고
    • AT-AC pre-mRNA splicing mechanisms and conservation of minor introns in voltage-gated ion channel genes
    • Wu Q, Krainer AR. AT-AC pre-mRNA splicing mechanisms and conservation of minor introns in voltage-gated ion channel genes. Mol Cell Biol. 1999; 19: 3225-36.
    • (1999) Mol Cell Biol , vol.19 , pp. 3225-3236
    • Wu, Q.1    Krainer, A.R.2
  • 38
    • 0345169036 scopus 로고    scopus 로고
    • Splicing double: Insights from the second spliceosome
    • doi:10.1038/nrm1259 nrm1259 [pii]
    • Patel AA, Steitz JA. Splicing double: insights from the second spliceosome. Nat Rev Mol Cell Biol. 2003; 4: 960-70. doi:10.1038/nrm1259 nrm1259 [pii].
    • (2003) Nat Rev Mol Cell Biol , vol.4 , pp. 960-970
    • Patel, A.A.1    Steitz, J.A.2
  • 39
    • 78650460773 scopus 로고    scopus 로고
    • Primate and rodent specific intron gains and the origin of retrogenes with splice variants
    • doi:msq260 [pii] 10.1093/molbev/msq260
    • Szczesniak MW, Ciomborowska J, Nowak W, Rogozin IB, Makalowska I. Primate and rodent specific intron gains and the origin of retrogenes with splice variants. Mol Biol Evol. 2011; 28: 33-7. doi:msq260 [pii] 10.1093/molbev/msq260.
    • (2011) Mol Biol Evol , vol.28 , pp. 33-37
    • Szczesniak, M.W.1    Ciomborowska, J.2    Nowak, W.3    Rogozin, I.B.4    Makalowska, I.5
  • 40
    • 0033119176 scopus 로고    scopus 로고
    • Initial recognition of U12-dependent introns requires both U11/5' splice-site and U12/branchpoint interactions
    • Frilander MJ, Steitz JA. Initial recognition of U12-dependent introns requires both U11/5' splice-site and U12/branchpoint interactions. Genes Dev. 1999; 13: 851-63.
    • (1999) Genes Dev , vol.13 , pp. 851-863
    • Frilander, M.J.1    Steitz, J.A.2
  • 41
    • 33751381461 scopus 로고    scopus 로고
    • TimeTree: A public knowledge-base of divergence times among organisms
    • doi:btl505 [pii] 10.1093/bioinformatics/btl505
    • Hedges SB, Dudley J, Kumar S. TimeTree: a public knowledge-base of divergence times among organisms. Bioinformatics. 2006; 22: 2971-2. doi:btl505 [pii] 10.1093/bioinformatics/btl505.
    • (2006) Bioinformatics , vol.22 , pp. 2971-2972
    • Hedges, S.B.1    Dudley, J.2    Kumar, S.3
  • 42
    • 37549026866 scopus 로고    scopus 로고
    • Intron loss and gain in Drosophila
    • doi:msm235 [pii] 10.1093/molbev/msm235
    • Coulombe-Huntington J, Majewski J. Intron loss and gain in Drosophila. Mol Biol Evol. 2007; 24: 2842-50. doi:msm235 [pii] 10.1093/molbev/msm235.
    • (2007) Mol Biol Evol , vol.24 , pp. 2842-2850
    • Coulombe-Huntington, J.1    Majewski, J.2
  • 43
    • 45549107558 scopus 로고    scopus 로고
    • U12 intron positions are more strongly conserved between animals and plants than U2 intron positions
    • doi:1745-6150-3-19 [pii] 10.1186/1745-6150-3-19
    • Basu MK, Makalowski W, Rogozin IB, Koonin EV. U12 intron positions are more strongly conserved between animals and plants than U2 intron positions. Biol Direct. 2008; 3: 19. doi:1745-6150-3-19 [pii] 10.1186/1745-6150-3-19.
    • (2008) Biol Direct , vol.3 , pp. 19
    • Basu, M.K.1    Makalowski, W.2    Rogozin, I.B.3    Koonin, E.V.4
  • 44
    • 1342346504 scopus 로고    scopus 로고
    • An intronic enhancer regulates splicing of the twintron of Drosophila melanogaster prospero pre-mRNA by two different spliceosomes
    • Scamborova P, Wong A, Steitz JA. An intronic enhancer regulates splicing of the twintron of Drosophila melanogaster prospero pre-mRNA by two different spliceosomes. Mol Cell Biol. 2004; 24: 1855-69.
    • (2004) Mol Cell Biol , vol.24 , pp. 1855-1869
    • Scamborova, P.1    Wong, A.2    Steitz, J.A.3
  • 45
    • 62449296880 scopus 로고    scopus 로고
    • Drosophila hnRNP A1 homologs Hrp36/Hrp38 enhance U2-type versus U12-type splicing to regulate alternative splicing of the prospero twintron
    • doi:0812826106 [pii] 10.1073/pnas.0812826106
    • Borah S, Wong AC, Steitz JA. Drosophila hnRNP A1 homologs Hrp36/Hrp38 enhance U2-type versus U12-type splicing to regulate alternative splicing of the prospero twintron. Proc Natl Acad Sci U S A. 2009; 106: 2577-82. doi:0812826106 [pii] 10.1073/pnas.0812826106.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 2577-2582
    • Borah, S.1    Wong, A.C.2    Steitz, J.A.3
  • 46
    • 0034710240 scopus 로고    scopus 로고
    • Pre-messenger RNA processing factors in the Drosophila genome
    • Mount SM, Salz HK. Pre-messenger RNA processing factors in the Drosophila genome. J Cell Biol. 2000; 150: F37-44.
    • (2000) J Cell Biol , vol.150
    • Mount, S.M.1    Salz, H.K.2
  • 47
    • 0033576626 scopus 로고    scopus 로고
    • Functional recognition of the 3' splice site AG by the splicing factor U2AF35
    • doi:10.1038/45590
    • Wu S, Romfo CM, Nilsen TW, Green MR. Functional recognition of the 3' splice site AG by the splicing factor U2AF35. Nature. 1999; 402: 832-5. doi:10.1038/45590.
    • (1999) Nature , vol.402 , pp. 832-835
    • Wu, S.1    Romfo, C.M.2    Nilsen, T.W.3    Green, M.R.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.