-
1
-
-
84862302019
-
Before it gets started: regulating translation at the 5' UTR
-
Araujo P.R., Yoon K., Ko D., Smith A.D., Qiao M., Suresh U., Burns S.C., Penalva L.O. Before it gets started: regulating translation at the 5' UTR. Comp. Funct. Genomics 2012, 2012:475731.
-
(2012)
Comp. Funct. Genomics
, vol.2012
, pp. 475731
-
-
Araujo, P.R.1
Yoon, K.2
Ko, D.3
Smith, A.D.4
Qiao, M.5
Suresh, U.6
Burns, S.C.7
Penalva, L.O.8
-
3
-
-
33646193306
-
Control of mammalian translation by mRNA structure near caps
-
Babendure J.R., Babendure J.L., Ding J.H., Tsien R.Y. Control of mammalian translation by mRNA structure near caps. RNA 2006, 12:851-861.
-
(2006)
RNA
, vol.12
, pp. 851-861
-
-
Babendure, J.R.1
Babendure, J.L.2
Ding, J.H.3
Tsien, R.Y.4
-
4
-
-
19344378943
-
Rules of engagement: co-transcriptional recruitment of pre-mRNA processing factors
-
Bentley D.L. Rules of engagement: co-transcriptional recruitment of pre-mRNA processing factors. Curr. Opin. Cell Biol. 2005, 17:251-256.
-
(2005)
Curr. Opin. Cell Biol.
, vol.17
, pp. 251-256
-
-
Bentley, D.L.1
-
5
-
-
0344622123
-
Spliced segments at the 5' terminus of adenovirus 2 late mRNA
-
Berget S.M., Moore C., Sharp P.A. Spliced segments at the 5' terminus of adenovirus 2 late mRNA. Proc. Natl. Acad. Sci. USA 1977, 74:3171-3175.
-
(1977)
Proc. Natl. Acad. Sci. USA
, vol.74
, pp. 3171-3175
-
-
Berget, S.M.1
Moore, C.2
Sharp, P.A.3
-
6
-
-
0028266818
-
Evidence that the pathway of transferrin receptor mRNA degradation involves an endonucleolytic cleavage within the 3' UTR and does not involve poly(A) tail shortening
-
Binder R., Horowitz J.A., Basilion J.P., Koeller D.M., Klausner R.D., Harford J.B. Evidence that the pathway of transferrin receptor mRNA degradation involves an endonucleolytic cleavage within the 3' UTR and does not involve poly(A) tail shortening. EMBO J. 1994, 13:1969-1980.
-
(1994)
EMBO J.
, vol.13
, pp. 1969-1980
-
-
Binder, R.1
Horowitz, J.A.2
Basilion, J.P.3
Koeller, D.M.4
Klausner, R.D.5
Harford, J.B.6
-
7
-
-
84555189622
-
Analysis of co-transcriptional RNA processing by RNA-ChIP assay
-
Bittencourt D., Auboeuf D. Analysis of co-transcriptional RNA processing by RNA-ChIP assay. Methods Mol. Biol. 2012, 809:563-577.
-
(2012)
Methods Mol. Biol.
, vol.809
, pp. 563-577
-
-
Bittencourt, D.1
Auboeuf, D.2
-
8
-
-
0013394889
-
Mechanisms of alternative pre-messenger RNA splicing
-
Black D.L. Mechanisms of alternative pre-messenger RNA splicing. Annu. Rev. Biochem. 2003, 72:291-336.
-
(2003)
Annu. Rev. Biochem.
, vol.72
, pp. 291-336
-
-
Black, D.L.1
-
9
-
-
34249278470
-
Control of alternative RNA splicing and gene expression by eukaryotic riboswitches
-
Cheah M.T., Wachter A., Sudarsan N., Breaker R.R. Control of alternative RNA splicing and gene expression by eukaryotic riboswitches. Nature 2007, 447:497-500.
-
(2007)
Nature
, vol.447
, pp. 497-500
-
-
Cheah, M.T.1
Wachter, A.2
Sudarsan, N.3
Breaker, R.R.4
-
10
-
-
0033497101
-
RNA secondary structure and compensatory evolution
-
Chen Y., Carlini D.B., Baines J.F., Parsch J., Braverman J.M., Tanda S., Stephan W. RNA secondary structure and compensatory evolution. Genes Genet. Syst. 1999, 74:271-286.
-
(1999)
Genes Genet. Syst.
, vol.74
, pp. 271-286
-
-
Chen, Y.1
Carlini, D.B.2
Baines, J.F.3
Parsch, J.4
Braverman, J.M.5
Tanda, S.6
Stephan, W.7
-
11
-
-
0017688583
-
An amazing sequence arrangement at the 5' ends of adenovirus 2 messenger RNA
-
Chow L.T., Gelinas R.E., Broker T.R., Roberts R.J. An amazing sequence arrangement at the 5' ends of adenovirus 2 messenger RNA. Cell 1977, 12:1-8.
-
(1977)
Cell
, vol.12
, pp. 1-8
-
-
Chow, L.T.1
Gelinas, R.E.2
Broker, T.R.3
Roberts, R.J.4
-
12
-
-
0035283171
-
Statistical prediction of single-stranded regions in RNA secondary structure and application to predicting effective antisense target sites and beyond
-
Ding Y., Lawrence C.E. Statistical prediction of single-stranded regions in RNA secondary structure and application to predicting effective antisense target sites and beyond. Nucleic Acids Res. 2001, 29:1034-1046.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 1034-1046
-
-
Ding, Y.1
Lawrence, C.E.2
-
13
-
-
33747634776
-
Stabilization of the tau exon 10 stem loop alters pre-mRNA splicing
-
Donahue C.P., Muratore C., Wu J.Y., Kosik K.S., Wolfe M.S. Stabilization of the tau exon 10 stem loop alters pre-mRNA splicing. J. Biol. Chem. 2006, 281:23302-23306.
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 23302-23306
-
-
Donahue, C.P.1
Muratore, C.2
Wu, J.Y.3
Kosik, K.S.4
Wolfe, M.S.5
-
14
-
-
0026755181
-
A native RNA secondary structure controls alternative splice-site selection and generates two human growth hormone isoforms
-
Estes P.A., Cooke N.E., Liebhaber S.A. A native RNA secondary structure controls alternative splice-site selection and generates two human growth hormone isoforms. J. Biol. Chem. 1992, 267:14902-14908.
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 14902-14908
-
-
Estes, P.A.1
Cooke, N.E.2
Liebhaber, S.A.3
-
15
-
-
84865448443
-
Comparative proteomics reveals a significant bias toward alternative protein isoforms with conserved structure and function
-
Ezkurdia I., Del Pozo A., Frankish A., Rodriguez J.M., Harrow J., Ashman K., Valencia A., Tress M.L. Comparative proteomics reveals a significant bias toward alternative protein isoforms with conserved structure and function. Mol. Biol. Evol. 2012, 29:2265-2283.
-
(2012)
Mol. Biol. Evol.
, vol.29
, pp. 2265-2283
-
-
Ezkurdia, I.1
Del Pozo, A.2
Frankish, A.3
Rodriguez, J.M.4
Harrow, J.5
Ashman, K.6
Valencia, A.7
Tress, M.L.8
-
16
-
-
79958153915
-
MAISTAS: a tool for automatic structural evaluation of alternative splicing products
-
Floris M., Raimondo D., Leoni G., Orsini M., Marcatili P., Tramontano A. MAISTAS: a tool for automatic structural evaluation of alternative splicing products. Bioinformatics 2011, 27:1625-1629.
-
(2011)
Bioinformatics
, vol.27
, pp. 1625-1629
-
-
Floris, M.1
Raimondo, D.2
Leoni, G.3
Orsini, M.4
Marcatili, P.5
Tramontano, A.6
-
17
-
-
33748090286
-
Novel drug discovery and molecular biological methods, via DNA, RNA and protein changes using structure-function transitions: transitional structural chemogenomics, transitional structural chemoproteomics and novel multi-stranded nucleic acid microarray
-
Gagna C.E., Lambert W.C. Novel drug discovery and molecular biological methods, via DNA, RNA and protein changes using structure-function transitions: transitional structural chemogenomics, transitional structural chemoproteomics and novel multi-stranded nucleic acid microarray. Med. Hypotheses 2006, 67:1099-1114.
-
(2006)
Med. Hypotheses
, vol.67
, pp. 1099-1114
-
-
Gagna, C.E.1
Lambert, W.C.2
-
18
-
-
66849132737
-
Novel multistranded, alternative, plasmid and helical transitional DNA and RNA microarrays: implications for therapeutics
-
Gagna C.E., Lambert W.C. Novel multistranded, alternative, plasmid and helical transitional DNA and RNA microarrays: implications for therapeutics. Pharmacogenomics 2009, 10:895-914.
-
(2009)
Pharmacogenomics
, vol.10
, pp. 895-914
-
-
Gagna, C.E.1
Lambert, W.C.2
-
19
-
-
79954456859
-
Determinants of translation efficiency and accuracy
-
Gingold H., Pilpel Y. Determinants of translation efficiency and accuracy. Mol. Syst. Biol. 2011, 7:481.
-
(2011)
Mol. Syst. Biol.
, vol.7
, pp. 481
-
-
Gingold, H.1
Pilpel, Y.2
-
20
-
-
77649198142
-
A universal trend of reduced mRNA stability near the translation-initiation site in prokaryotes and eukaryotes
-
Gu W., Zhou T., Wilke C.O. A universal trend of reduced mRNA stability near the translation-initiation site in prokaryotes and eukaryotes. PLoS Comput. Biol. 2010, 6:e1000664.
-
(2010)
PLoS Comput. Biol.
, vol.6
-
-
Gu, W.1
Zhou, T.2
Wilke, C.O.3
-
21
-
-
76149130971
-
Alternative splicing: global insights
-
Hallegger M., Llorian M., Smith C.W. Alternative splicing: global insights. FEBS J. 2010, 277:856-866.
-
(2010)
FEBS J.
, vol.277
, pp. 856-866
-
-
Hallegger, M.1
Llorian, M.2
Smith, C.W.3
-
22
-
-
79952351014
-
Verification of alternative splicing variants based on domain integrity, truncation length and intrinsic protein disorder
-
Hegyi H., Kalmar L., Horvath T., Tompa P. Verification of alternative splicing variants based on domain integrity, truncation length and intrinsic protein disorder. Nucleic Acids Res. 2011, 39:1208-1219.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 1208-1219
-
-
Hegyi, H.1
Kalmar, L.2
Horvath, T.3
Tompa, P.4
-
23
-
-
0027377681
-
Multiple coding and the evolutionary properties of RNA secondary structure
-
Huynen M.A., Konings D.A., Hogeweg P. Multiple coding and the evolutionary properties of RNA secondary structure. J. Theor. Biol. 1993, 165:251-267.
-
(1993)
J. Theor. Biol.
, vol.165
, pp. 251-267
-
-
Huynen, M.A.1
Konings, D.A.2
Hogeweg, P.3
-
24
-
-
77957884765
-
A conserved stem loop motif in the 5'untranslated region regulates transforming growth factor-β1 translation
-
Jenkins R.H., Bennagi R., Martin J., Phillips A.O., Redman J.E., Fraser D.J. A conserved stem loop motif in the 5'untranslated region regulates transforming growth factor-β1 translation. PLoS ONE 2010, 5:e12283.
-
(2010)
PLoS ONE
, vol.5
-
-
Jenkins, R.H.1
Bennagi, R.2
Martin, J.3
Phillips, A.O.4
Redman, J.E.5
Fraser, D.J.6
-
25
-
-
79956067688
-
New insight into RNA secondary structure on alternative splicing of pre-mRNA
-
Jin Y., Yang Y., Zhang P. New insight into RNA secondary structure on alternative splicing of pre-mRNA. RNA Biology 2011, 8:450-457.
-
(2011)
RNA Biology
, vol.8
, pp. 450-457
-
-
Jin, Y.1
Yang, Y.2
Zhang, P.3
-
26
-
-
79955379829
-
RNA helicase p68 (DDX5) regulates tau exon 10 splicing by modulating a stem-loop structure at the 5' splice site
-
Kar A., Fushimi K., Zhou X., Ray P., Shi C., Chen X., Liu Z., Chen S., Wu J.Y. RNA helicase p68 (DDX5) regulates tau exon 10 splicing by modulating a stem-loop structure at the 5' splice site. Mol. Cell. Biol. 2011, 31:1812-1821.
-
(2011)
Mol. Cell. Biol.
, vol.31
, pp. 1812-1821
-
-
Kar, A.1
Fushimi, K.2
Zhou, X.3
Ray, P.4
Shi, C.5
Chen, X.6
Liu, Z.7
Chen, S.8
Wu, J.Y.9
-
27
-
-
77956306662
-
Genome-wide measurement of RNA secondary structure in yeast
-
Kertesz M., Wan Y., Mazor E., Rinn J.L., Nutter R.C., Chang H.Y., Segal E. Genome-wide measurement of RNA secondary structure in yeast. Nature 2010, 467:103-107.
-
(2010)
Nature
, vol.467
, pp. 103-107
-
-
Kertesz, M.1
Wan, Y.2
Mazor, E.3
Rinn, J.L.4
Nutter, R.C.5
Chang, H.Y.6
Segal, E.7
-
28
-
-
0026708669
-
Post-transcriptional regulation of the human transforming growth factor-β1 gene
-
Kim S.J., Park K., Koeller D., Kim K.Y., Wakefield L.M., Sporn M.B., Roberts A.B. Post-transcriptional regulation of the human transforming growth factor-β1 gene. J. Biol. Chem. 1992, 267:13702-13707.
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 13702-13707
-
-
Kim, S.J.1
Park, K.2
Koeller, D.3
Kim, K.Y.4
Wakefield, L.M.5
Sporn, M.B.6
Roberts, A.B.7
-
29
-
-
35548935529
-
AUG_hairpin: prediction of a downstream secondary structure influencing the recognition of a translation start site
-
Kochetov A.V., Palyanov A., Titov I.I., Grigorovich D., Sarai A., Kolchanov N.A. AUG_hairpin: prediction of a downstream secondary structure influencing the recognition of a translation start site. BMC Bioinformatics 2007, 8:318.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 318
-
-
Kochetov, A.V.1
Palyanov, A.2
Titov, I.I.3
Grigorovich, D.4
Sarai, A.5
Kolchanov, N.A.6
-
30
-
-
0023882730
-
Leader length and secondary structure modulate mRNA function under conditions of stress
-
Kozak M. Leader length and secondary structure modulate mRNA function under conditions of stress. Mol. Cell. Biol. 1988, 8:2737-2744.
-
(1988)
Mol. Cell. Biol.
, vol.8
, pp. 2737-2744
-
-
Kozak, M.1
-
31
-
-
0024414469
-
Circumstances and mechanisms of inhibition of translation by secondary structure in eucaryotic mRNAs
-
Kozak M. Circumstances and mechanisms of inhibition of translation by secondary structure in eucaryotic mRNAs. Mol. Cell. Biol. 1989, 9:5134-5142.
-
(1989)
Mol. Cell. Biol.
, vol.9
, pp. 5134-5142
-
-
Kozak, M.1
-
32
-
-
0024394362
-
Context effects and inefficient initiation at non-AUG codons in eucaryotic cell-free translation systems
-
Kozak M. Context effects and inefficient initiation at non-AUG codons in eucaryotic cell-free translation systems. Mol. Cell. Biol. 1989, 9:5073-5080.
-
(1989)
Mol. Cell. Biol.
, vol.9
, pp. 5073-5080
-
-
Kozak, M.1
-
33
-
-
0025107694
-
Downstream secondary structure facilitates recognition of initiator codons by eukaryotic ribosomes
-
Kozak M. Downstream secondary structure facilitates recognition of initiator codons by eukaryotic ribosomes. Proc. Natl. Acad. Sci. USA 1990, 87:8301-8305.
-
(1990)
Proc. Natl. Acad. Sci. USA
, vol.87
, pp. 8301-8305
-
-
Kozak, M.1
-
34
-
-
27144555357
-
Regulation of translation via mRNA structure in prokaryotes and eukaryotes
-
Kozak M. Regulation of translation via mRNA structure in prokaryotes and eukaryotes. Gene 2005, 361:13-37.
-
(2005)
Gene
, vol.361
, pp. 13-37
-
-
Kozak, M.1
-
35
-
-
77952687104
-
Predicting in vivo binding sites of RNA-binding proteins using mRNA secondary structure
-
Li X., Quon G., Lipshitz H.D., Morris Q. Predicting in vivo binding sites of RNA-binding proteins using mRNA secondary structure. RNA 2010, 16:1096-1107.
-
(2010)
RNA
, vol.16
, pp. 1096-1107
-
-
Li, X.1
Quon, G.2
Lipshitz, H.D.3
Morris, Q.4
-
36
-
-
79960571755
-
Multiplexed RNA structure characterization with selective 2'-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq)
-
Lucks J.B., Mortimer S.A., Trapnell C., Luo S., Aviran S., Schroth G.P., Pachter L., Doudna J.A., Arkin A.P. Multiplexed RNA structure characterization with selective 2'-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq). Proc. Natl. Acad. Sci. USA 2011, 108:11063-11068.
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 11063-11068
-
-
Lucks, J.B.1
Mortimer, S.A.2
Trapnell, C.3
Luo, S.4
Aviran, S.5
Schroth, G.P.6
Pachter, L.7
Doudna, J.A.8
Arkin, A.P.9
-
38
-
-
79960918747
-
RNA structure and the mechanisms of alternative splicing
-
McManus C.J., Graveley B.R. RNA structure and the mechanisms of alternative splicing. Curr. Opin. Genet. Dev. 2011, 21:373-379.
-
(2011)
Curr. Opin. Genet. Dev.
, vol.21
, pp. 373-379
-
-
McManus, C.J.1
Graveley, B.R.2
-
39
-
-
69049116283
-
Stochastic noise in splicing machinery
-
Melamud E., Moult J. Stochastic noise in splicing machinery. Nucleic Acids Res. 2009, 37:4873-4886.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 4873-4886
-
-
Melamud, E.1
Moult, J.2
-
40
-
-
69049120339
-
Structural implication of splicing stochastics
-
Melamud E., Moult J. Structural implication of splicing stochastics. Nucleic Acids Res. 2009, 37:4862-4872.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 4862-4872
-
-
Melamud, E.1
Moult, J.2
-
41
-
-
16244412610
-
RNA structure analysis at single nucleotide resolution by selective 2'-hydroxyl acylation and primer extension (SHAPE)
-
Merino E.J., Wilkinson K.A., Coughlan J.L., Weeks K.M. RNA structure analysis at single nucleotide resolution by selective 2'-hydroxyl acylation and primer extension (SHAPE). J. Am. Chem. Soc. 2005, 127:4223-4231.
-
(2005)
J. Am. Chem. Soc.
, vol.127
, pp. 4223-4231
-
-
Merino, E.J.1
Wilkinson, K.A.2
Coughlan, J.L.3
Weeks, K.M.4
-
43
-
-
0038617729
-
Alternative splicing in the human, mouse and rat genomes is associated with an increased frequency of exon creation and/or loss
-
Modrek B., Lee C.J. Alternative splicing in the human, mouse and rat genomes is associated with an increased frequency of exon creation and/or loss. Nat. Genet. 2003, 34:177-180.
-
(2003)
Nat. Genet.
, vol.34
, pp. 177-180
-
-
Modrek, B.1
Lee, C.J.2
-
44
-
-
84862195751
-
Structural architecture of the human long non-coding RNA, steroid receptor RNA activator
-
Novikova I.V., Hennelly S.P., Sanbonmatsu K.Y. Structural architecture of the human long non-coding RNA, steroid receptor RNA activator. Nucleic Acids Res. 2012, 40:5034-5051.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 5034-5051
-
-
Novikova, I.V.1
Hennelly, S.P.2
Sanbonmatsu, K.Y.3
-
45
-
-
77956016131
-
Identification of a consensus element recognized and cleaved by IRE1 α
-
Oikawa D., Tokuda M., Hosoda A., Iwawaki T. Identification of a consensus element recognized and cleaved by IRE1 α. Nucleic Acids Res. 2010, 38:6265-6273.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 6265-6273
-
-
Oikawa, D.1
Tokuda, M.2
Hosoda, A.3
Iwawaki, T.4
-
46
-
-
56749098074
-
Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing
-
Pan Q., Shai O., Lee L.J., Frey B.J., Blencowe B.J. Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing. Nat. Genet. 2008, 40:1413-1415.
-
(2008)
Nat. Genet.
, vol.40
, pp. 1413-1415
-
-
Pan, Q.1
Shai, O.2
Lee, L.J.3
Frey, B.J.4
Blencowe, B.J.5
-
47
-
-
19944365069
-
Revealing global regulatory features of mammalian alternative splicing using a quantitative microarray platform
-
Pan Q., Shai O., Misquitta C., Zhang W., Saltzman A.L., Mohammad N., Babak T., Siu H., Hughes T.R., Morris Q.D., Frey B.J., Blencowe B.J. Revealing global regulatory features of mammalian alternative splicing using a quantitative microarray platform. Mol. Cell 2004, 16:929-941.
-
(2004)
Mol. Cell
, vol.16
, pp. 929-941
-
-
Pan, Q.1
Shai, O.2
Misquitta, C.3
Zhang, W.4
Saltzman, A.L.5
Mohammad, N.6
Babak, T.7
Siu, H.8
Hughes, T.R.9
Morris, Q.D.10
Frey, B.J.11
Blencowe, B.J.12
-
48
-
-
0034281297
-
The untranslated regions of eukaryotic mRNAs: structure, function, evolution and bioinformatic tools for their analysis
-
Pesole G., Grillo G., Larizza A., Liuni S. The untranslated regions of eukaryotic mRNAs: structure, function, evolution and bioinformatic tools for their analysis. Brief Bioinformatics 2000, 1:236-249.
-
(2000)
Brief Bioinformatics
, vol.1
, pp. 236-249
-
-
Pesole, G.1
Grillo, G.2
Larizza, A.3
Liuni, S.4
-
49
-
-
77953957633
-
A coding-independent function of gene and pseudogene mRNAs regulates tumour biology
-
Poliseno L., Salmena L., Zhang J., Carver B., Haveman W.J., Pandolfi P.P. A coding-independent function of gene and pseudogene mRNAs regulates tumour biology. Nature 2010, 465:1033-1038.
-
(2010)
Nature
, vol.465
, pp. 1033-1038
-
-
Poliseno, L.1
Salmena, L.2
Zhang, J.3
Carver, B.4
Haveman, W.J.5
Pandolfi, P.P.6
-
50
-
-
79951510534
-
Crystal structure of the eukaryotic 40S ribosomal subunit in complex with initiation factor 1
-
Rabl J., Leibundgut M., Ataide S.F., Haag A., Ban N. Crystal structure of the eukaryotic 40S ribosomal subunit in complex with initiation factor 1. Science 2011, 331:730-736.
-
(2011)
Science
, vol.331
, pp. 730-736
-
-
Rabl, J.1
Leibundgut, M.2
Ataide, S.F.3
Haag, A.4
Ban, N.5
-
51
-
-
0027220013
-
An element of the transforming growth factor-beta 1 5'-untranslated region represses translation and specifically binds a cytosolic factor
-
Romeo D.S., Park K., Roberts A.B., Sporn M.B., Kim S.J. An element of the transforming growth factor-beta 1 5'-untranslated region represses translation and specifically binds a cytosolic factor. Mol. Endocrinol. 1993, 7:759-766.
-
(1993)
Mol. Endocrinol.
, vol.7
, pp. 759-766
-
-
Romeo, D.S.1
Park, K.2
Roberts, A.B.3
Sporn, M.B.4
Kim, S.J.5
-
52
-
-
70649088961
-
The peculiarities of large intron splicing in animals
-
Shepard S., McCreary M., Fedorov A. The peculiarities of large intron splicing in animals. PLoS ONE 2009, 4:e7853.
-
(2009)
PLoS ONE
, vol.4
-
-
Shepard, S.1
McCreary, M.2
Fedorov, A.3
-
53
-
-
0842289003
-
An extended inhibitory context causes skipping of exon 7 of SMN2 in spinal muscular atrophy
-
Singh N.N., Androphy E.J., Singh R.N. An extended inhibitory context causes skipping of exon 7 of SMN2 in spinal muscular atrophy. Biochem. Biophys. Res. Commun. 2004, 315:381-388.
-
(2004)
Biochem. Biophys. Res. Commun.
, vol.315
, pp. 381-388
-
-
Singh, N.N.1
Androphy, E.J.2
Singh, R.N.3
-
54
-
-
33846925650
-
Modulating role of RNA structure in alternative splicing of a critical exon in the spinal muscular atrophy genes
-
Singh N.N., Singh R.N., Androphy E.J. Modulating role of RNA structure in alternative splicing of a critical exon in the spinal muscular atrophy genes. Nucleic Acids Res. 2007, 35:371-389.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 371-389
-
-
Singh, N.N.1
Singh, R.N.2
Androphy, E.J.3
-
55
-
-
0028978330
-
β-Tropomyosin pre-mRNA folding around a muscle-specific exon interferes with several steps of spliceosome assembly
-
Sirand-Pugnet P., Durosay P., Clouet d'Orval B.C., Brody E., Marie J. β-Tropomyosin pre-mRNA folding around a muscle-specific exon interferes with several steps of spliceosome assembly. J. Mol. Biol. 1995, 251:591-602.
-
(1995)
J. Mol. Biol.
, vol.251
, pp. 591-602
-
-
Sirand-Pugnet, P.1
Durosay, P.2
Clouet d'Orval, B.C.3
Brody, E.4
Marie, J.5
-
56
-
-
0035032444
-
The requirement for eukaryotic initiation factor 4A (elF4A) in translation is in direct proportion to the degree of mRNA 5' secondary structure
-
Svitkin Y.V., Pause A., Haghighat A., Pyronnet S., Witherell G., Belsham G.J., Sonenberg N. The requirement for eukaryotic initiation factor 4A (elF4A) in translation is in direct proportion to the degree of mRNA 5' secondary structure. RNA 2001, 7:382-394.
-
(2001)
RNA
, vol.7
, pp. 382-394
-
-
Svitkin, Y.V.1
Pause, A.2
Haghighat, A.3
Pyronnet, S.4
Witherell, G.5
Belsham, G.J.6
Sonenberg, N.7
-
57
-
-
80051713330
-
Disruptive mRNA folding increases translational efficiency of catechol-O-methyltransferase variant
-
Tsao D., Shabalina S.A., Gauthier J., Dokholyan N.V., Diatchenko L. Disruptive mRNA folding increases translational efficiency of catechol-O-methyltransferase variant. Nucleic Acids Res. 2011, 39:6201-6212.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 6201-6212
-
-
Tsao, D.1
Shabalina, S.A.2
Gauthier, J.3
Dokholyan, N.V.4
Diatchenko, L.5
-
58
-
-
78649690492
-
FragSeq: transcriptome-wide RNA structure probing using high-throughput sequencing
-
Underwood J.G., Uzilov A.V., Katzman S., Onodera C.S., Mainzer J.E., Mathews D.H., Lowe T.M., Salama S.R., Haussler D. FragSeq: transcriptome-wide RNA structure probing using high-throughput sequencing. Nat. Methods 2010, 7:995-1001.
-
(2010)
Nat. Methods
, vol.7
, pp. 995-1001
-
-
Underwood, J.G.1
Uzilov, A.V.2
Katzman, S.3
Onodera, C.S.4
Mainzer, J.E.5
Mathews, D.H.6
Lowe, T.M.7
Salama, S.R.8
Haussler, D.9
-
59
-
-
0033529304
-
Structure of tau exon 10 splicing regulatory element RNA and destabilization by mutations of frontotemporal dementia and parkinsonism linked to chromosome 17
-
Varani L., Hasegawa M., Spillantini M.G., Smith M.J., Murrell J.R., Ghetti B., Klug A., Goedert M., Varani G. Structure of tau exon 10 splicing regulatory element RNA and destabilization by mutations of frontotemporal dementia and parkinsonism linked to chromosome 17. Proc. Natl. Acad. Sci. USA 1999, 96:8229-8234.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 8229-8234
-
-
Varani, L.1
Hasegawa, M.2
Spillantini, M.G.3
Smith, M.J.4
Murrell, J.R.5
Ghetti, B.6
Klug, A.7
Goedert, M.8
Varani, G.9
-
60
-
-
77956261738
-
Sequence signatures and mRNA concentration can explain two-thirds of protein abundance variation in a human cell line
-
Vogel C., Abreu Rde S., Ko D., Le S.Y., Shapiro B.A., Burns S.C., Sandhu D., Boutz D.R., Marcotte E.M., Penalva L.O. Sequence signatures and mRNA concentration can explain two-thirds of protein abundance variation in a human cell line. Mol. Syst. Biol. 2010, 6:400.
-
(2010)
Mol. Syst. Biol.
, vol.6
, pp. 400
-
-
Vogel, C.1
Abreu Rde, S.2
Ko, D.3
Le, S.Y.4
Shapiro, B.A.5
Burns, S.C.6
Sandhu, D.7
Boutz, D.R.8
Marcotte, E.M.9
Penalva, L.O.10
-
61
-
-
80051989609
-
Understanding the transcriptome through RNA structure
-
Wan Y., Kertesz M., Spitale R.C., Segal E., Chang H.Y. Understanding the transcriptome through RNA structure. Nat. Rev. Genet. 2011, 12:641-655.
-
(2011)
Nat. Rev. Genet.
, vol.12
, pp. 641-655
-
-
Wan, Y.1
Kertesz, M.2
Spitale, R.C.3
Segal, E.4
Chang, H.Y.5
-
62
-
-
42449098125
-
Splicing regulation: from a parts list of regulatory elements to an integrated splicing code
-
Wang Z., Burge C.B. Splicing regulation: from a parts list of regulatory elements to an integrated splicing code. RNA 2008, 14:802-813.
-
(2008)
RNA
, vol.14
, pp. 802-813
-
-
Wang, Z.1
Burge, C.B.2
-
63
-
-
77649158879
-
Role of RNA structure in regulating pre-mRNA splicing
-
Warf M.B., Berglund J.A. Role of RNA structure in regulating pre-mRNA splicing. Trends Biochem. Sci. 2010, 35:169-178.
-
(2010)
Trends Biochem. Sci.
, vol.35
, pp. 169-178
-
-
Warf, M.B.1
Berglund, J.A.2
-
64
-
-
77952760808
-
Sequence and structure analysis of noncoding RNAs
-
Washietl S. Sequence and structure analysis of noncoding RNAs. Methods Mol. Biol. 2010, 609:285-306.
-
(2010)
Methods Mol. Biol.
, vol.609
, pp. 285-306
-
-
Washietl, S.1
-
65
-
-
79960611669
-
Exploring RNA structural codes with SHAPE chemistry
-
Weeks K.M., Mauger D.M. Exploring RNA structural codes with SHAPE chemistry. Acc. Chem. Res. 2011, 44:1280-1291.
-
(2011)
Acc. Chem. Res.
, vol.44
, pp. 1280-1291
-
-
Weeks, K.M.1
Mauger, D.M.2
-
66
-
-
41149155366
-
Following translation by single ribosomes one codon at a time
-
Wen J.D., Lancaster L., Hodges C., Zeri A.C., Yoshimura S.H., Noller H.F., Bustamante C., Tinoco I. Following translation by single ribosomes one codon at a time. Nature 2008, 452:598-603.
-
(2008)
Nature
, vol.452
, pp. 598-603
-
-
Wen, J.D.1
Lancaster, L.2
Hodges, C.3
Zeri, A.C.4
Yoshimura, S.H.5
Noller, H.F.6
Bustamante, C.7
Tinoco, I.8
-
67
-
-
79960450999
-
Increased complexity of gene structure and base composition in vertebrates
-
Wu J., Yuan H., Tan S., Chen J.Q., Tian D., Yang H. Increased complexity of gene structure and base composition in vertebrates. J. Genet. Genomics 2011, 38:297-305.
-
(2011)
J. Genet. Genomics
, vol.38
, pp. 297-305
-
-
Wu, J.1
Yuan, H.2
Tan, S.3
Chen, J.Q.4
Tian, D.5
Yang, H.6
-
68
-
-
79551653312
-
RNA secondary structure in mutually exclusive splicing
-
Yang Y., Zhan L., Zhang W., Sun F., Wang W., Tian N., Bi J., Wang H., Shi D., Jiang Y., Zhang Y., Jin Y. RNA secondary structure in mutually exclusive splicing. Nat. Struct. Mol. Biol. 2011, 18:159-168.
-
(2011)
Nat. Struct. Mol. Biol.
, vol.18
, pp. 159-168
-
-
Yang, Y.1
Zhan, L.2
Zhang, W.3
Sun, F.4
Wang, W.5
Tian, N.6
Bi, J.7
Wang, H.8
Shi, D.9
Jiang, Y.10
Zhang, Y.11
Jin, Y.12
-
69
-
-
79251564926
-
GC content around splice sites affects splicing through pre-mRNA secondary structures
-
Zhang J., Kuo C.C., Chen L. GC content around splice sites affects splicing through pre-mRNA secondary structures. BMC Genomics 2011, 12:90.
-
(2011)
BMC Genomics
, vol.12
, pp. 90
-
-
Zhang, J.1
Kuo, C.C.2
Chen, L.3
-
70
-
-
65749105061
-
Structural basis for stabilization of the tau pre-mRNA splicing regulatory element by novantrone (mitoxantrone)
-
Zheng S., Chen Y., Donahue C.P., Wolfe M.S., Varani G. Structural basis for stabilization of the tau pre-mRNA splicing regulatory element by novantrone (mitoxantrone). Chem. Biol. 2009, 16:557-566.
-
(2009)
Chem. Biol.
, vol.16
, pp. 557-566
-
-
Zheng, S.1
Chen, Y.2
Donahue, C.P.3
Wolfe, M.S.4
Varani, G.5
|