-
1
-
-
0003604405
-
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York, USA
-
Gesteland, R., Cech, T. & Atkins, J. (eds). The RNA World 3rd edn. (Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York, USA, 2005).
-
(2005)
The RNA World 3rd edn.
-
-
Gesteland, R.1
Cech, T.2
Atkins, J.3
-
2
-
-
60549115605
-
Post-transcriptional processing generates a diversity of 5′-modifed long and short RNAs
-
Affymetrix/Cold Spring Harbor Laboratory ENCODE Transcriptome Project
-
Affymetrix/Cold Spring Harbor Laboratory ENCODE Transcriptome Project. Post-transcriptional processing generates a diversity of 5′-modifed long and short RNAs. Nature 457, 1028-1032 (2009).
-
(2009)
Nature
, vol.457
, pp. 1028-1032
-
-
-
3
-
-
62249133709
-
Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
-
Guttman, M. et al. Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals. Nature 458, 223-227 (2009).
-
(2009)
Nature
, vol.458
, pp. 223-227
-
-
Guttman, M.1
-
4
-
-
0035966319
-
MicroRNAs: Tiny regulators with great potential
-
Ambros, V. microRNAs: tiny regulators with great potential. Cell 107, 823-826 (2001).
-
(2001)
Cell
, vol.107
, pp. 823-826
-
-
Ambros, V.1
-
5
-
-
34250160256
-
RNA maps reveal new RNA classes and a possible function for pervasive transcription
-
Kapranov, P. et al. RNA maps reveal new RNA classes and a possible function for pervasive transcription. Science 316, 1484-1488 (2007).
-
(2007)
Science
, vol.316
, pp. 1484-1488
-
-
Kapranov, P.1
-
6
-
-
0024841809
-
Enzymatic approaches to probing of RNA secondary and tertiary structure
-
Knapp, G. Enzymatic approaches to probing of RNA secondary and tertiary structure. Methods Enzymol. 2, 192-212 (1989).
-
(1989)
Methods Enzymol.
, vol.2
, pp. 192-212
-
-
Knapp, G.1
-
7
-
-
77957139491
-
SHAPE-directed RNA secondary structure prediction
-
Low, J.T. & Weeks, K.M. SHAPE-directed RNA secondary structure prediction. Methods 52, 150-158 (2010).
-
(2010)
Methods
, vol.52
, pp. 150-158
-
-
Low, J.T.1
Weeks, K.M.2
-
8
-
-
36448997409
-
Computational methods in noncoding RNA research
-
Machado-Lima, A., del Portillo, H.A. & Durham, A.M. Computational methods in noncoding RNA research. J. Math. Biol. 56, 15-49 (2008).
-
(2008)
J. Math. Biol.
, vol.56
, pp. 15-49
-
-
MacHado-Lima, A.1
Del Portillo, H.A.2
Durham, A.M.3
-
9
-
-
30044449116
-
Genome-wide mapping of DNase hypersensitive sites using massively parallel signature sequencing (MPSS)
-
Crawford, G.E. et al. Genome-wide mapping of DNase hypersensitive sites using massively parallel signature sequencing (MPSS). Genome Res. 16, 123-131 (2006).
-
(2006)
Genome Res.
, vol.16
, pp. 123-131
-
-
Crawford, G.E.1
-
10
-
-
0037313844
-
Conversion of embryonic stem cells into neuroectoDermal precursors in adherent monoculture
-
Ying, Q.-L., Stavridis, M., Griffths, D., Li, M. & Smith, A. Conversion of embryonic stem cells into neuroectoDermal precursors in adherent monoculture. Nat. Biotechnol. 21, 183-186 (2003).
-
(2003)
Nat. Biotechnol.
, vol.21
, pp. 183-186
-
-
Ying, Q.-L.1
Stavridis, M.2
Griffths, D.3
Li, M.4
Smith, A.5
-
12
-
-
0017757667
-
3′-phosphatase activity in T4 polynucleotide kinase
-
Cameron, V. & Uhlenbeck, O.C. 3′-phosphatase activity in T4 polynucleotide kinase. Biochemistry 16, 5120-5126 (1977).
-
(1977)
Biochemistry
, vol.16
, pp. 5120-5126
-
-
Cameron, V.1
Uhlenbeck, O.C.2
-
13
-
-
0031850427
-
Recognition of single-stranded DNA by nuclease P1: High resolution crystal structures of complexes with substrate analogs
-
Romier, C., Dominguez, R., Lahm, A., Dahl, O. & Suck, D. Recognition of single-stranded DNA by nuclease P1: high resolution crystal structures of complexes with substrate analogs. Proteins 32, 414-424 (1998).
-
(1998)
Proteins
, vol.32
, pp. 414-424
-
-
Romier, C.1
Dominguez, R.2
Lahm, A.3
Dahl, O.4
Suck, D.5
-
14
-
-
46649108713
-
P1 nuclease cleavage is dependent on length of the mismatches in DNA
-
Naik, A.K. & RaghaVan, S.C. P1 nuclease cleavage is dependent on length of the mismatches in DNA. DNA Repair (Amst.) 7, 1384-1391 (2008).
-
(2008)
DNA Repair (Amst.)
, vol.7
, pp. 1384-1391
-
-
Naik, A.K.1
Raghavan, S.C.2
-
15
-
-
0023395345
-
Structural analyses of the human U3 ribonucleoprotein particle reveal a conserved sequence available for base pairing with pre-rRNA
-
Parker, K.A. & Steitz, J.A. Structural analyses of the human U3 ribonucleoprotein particle reveal a conserved sequence available for base pairing with pre-rRNA. Mol. Cell. Biol. 7, 2899-2913 (1987).
-
(1987)
Mol. Cell. Biol.
, vol.7
, pp. 2899-2913
-
-
Parker, K.A.1
Steitz, J.A.2
-
16
-
-
0036297657
-
Direct probing of RNA structure and RNA-protein interactions in purifed HeLa cell's and yeast spliceosomal U4/U6.U5 tri-snRNP particles
-
Mougin, A., Gottschalk, A., Fabrizio, P., Lührmann, R. & Branlant, C. Direct probing of RNA structure and RNA-protein interactions in purifed HeLa cell's and yeast spliceosomal U4/U6.U5 tri-snRNP particles. J. Mol. Biol. 317, 631-649 (2002).
-
(2002)
J. Mol. Biol.
, vol.317
, pp. 631-649
-
-
Mougin, A.1
Gottschalk, A.2
Fabrizio, P.3
Lührmann, R.4
Branlant, C.5
-
17
-
-
4544238584
-
Role of pre-rRNA base pairing and 80S complex formation in subnucleolar localization of the U3 snoRNP
-
Granneman, S. et al. Role of pre-rRNA base pairing and 80S complex formation in subnucleolar localization of the U3 snoRNP. Mol. Cell. Biol. 24, 8600-8610 (2004).
-
(2004)
Mol. Cell. Biol.
, vol.24
, pp. 8600-8610
-
-
Granneman, S.1
-
18
-
-
0025276512
-
The U3 small nucleolar ribonucleoprotein functions in the frst step of preribosomal RNA processing
-
Kass, S., Tyc, K., Steitz, J.A. & Sollner-Webb, B. The U3 small nucleolar ribonucleoprotein functions in the frst step of preribosomal RNA processing. Cell 60, 897-908 (1990).
-
(1990)
Cell
, vol.60
, pp. 897-908
-
-
Kass, S.1
Tyc, K.2
Steitz, J.A.3
Sollner-Webb, B.4
-
19
-
-
0027213118
-
Disruption of U8 nucleolar snRNA inhibits 5.8S and 28S rRNA processing in the Xenopus oocyte
-
Peculis, B.A. & Steitz, J.A. Disruption of U8 nucleolar snRNA inhibits 5.8S and 28S rRNA processing in the Xenopus oocyte. Cell 73, 1233-1245 (1993).
-
(1993)
Cell
, vol.73
, pp. 1233-1245
-
-
Peculis, B.A.1
Steitz, J.A.2
-
20
-
-
0028618662
-
Requirement for intron-encoded U22 small nucleolar RNA in 18S ribosomal RNA maturation
-
Tycowski, K., Shu, M. & Steitz, J. Requirement for intron-encoded U22 small nucleolar RNA in 18S ribosomal RNA maturation. Science 266, 1558-1561 (1994).
-
(1994)
Science
, vol.266
, pp. 1558-1561
-
-
Tycowski, K.1
Shu, M.2
Steitz, J.3
-
21
-
-
57749195712
-
RNA-Seq: A revolutionary tool for transcriptomics
-
Wang, Z., Gerstein, M. & SnyDer, M. RNA-Seq: a revolutionary tool for transcriptomics. Nat. Rev. Genet. 10, 57-63 (2009).
-
(2009)
Nat. Rev. Genet.
, vol.10
, pp. 57-63
-
-
Wang, Z.1
Gerstein, M.2
Snyder, M.3
-
22
-
-
77956306662
-
Genome-wide measurement of RNA secondary structure in yeast
-
Kertesz, M. et al. Genome-wide measurement of RNA secondary structure in yeast. Nature 467, 103-107 (2010).
-
(2010)
Nature
, vol.467
, pp. 103-107
-
-
Kertesz, M.1
-
23
-
-
77949447172
-
RNAstructure: Software for RNA secondary structure prediction and analysis
-
Reuter, J.S. & Mathews, D.H. RNAstructure: software for RNA secondary structure prediction and analysis. BMC Bioinformatics 11, 129 (2010).
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 129
-
-
Reuter, J.S.1
Mathews, D.H.2
-
25
-
-
0034546784
-
Nuclease protection of RNAs containing site-specifc labels: A rapid method for mapping RNA-protein interactions
-
Maroney, P., Romfo, C. & Nilsen, T. Nuclease protection of RNAs containing site-specifc labels: a rapid method for mapping RNA-protein interactions. RNA 6, 1905-1909 (2000).
-
(2000)
RNA
, vol.6
, pp. 1905-1909
-
-
Maroney, P.1
Romfo, C.2
Nilsen, T.3
-
26
-
-
0030604698
-
Site-specifc ribose methylation of preribosomal RNA: A novel function for small nucleolar RNAs
-
Kiss-László, Z., Henry, Y., Bachellerie, J.P., Caizergues-Ferrer, M. & Kiss, T. Site-specifc ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. Cell 85, 1077-1088 (1996).
-
(1996)
Cell
, vol.85
, pp. 1077-1088
-
-
Kiss-László, Z.1
Henry, Y.2
Bachellerie, J.P.3
Caizergues-Ferrer, M.4
Kiss, T.5
-
27
-
-
32344453096
-
Effcient method to generate single-copy transgenic mice by site-specifc integration in embryonic stem cells
-
Beard, C., Hochedlinger, K., Plath, K., Wutz, A. & Jaenisch, R. Effcient method to generate single-copy transgenic mice by site-specifc integration in embryonic stem cells. Genesis 44, 23-28 (2006).
-
(2006)
Genesis
, vol.44
, pp. 23-28
-
-
Beard, C.1
Hochedlinger, K.2
Plath, K.3
Wutz, A.4
Jaenisch, R.5
-
28
-
-
0033741374
-
Gene trapping methods for the identifcation and functional analysis of cell surface proteins in mice
-
Skarnes, W.C. Gene trapping methods for the identifcation and functional analysis of cell surface proteins in mice. Methods Enzymol. 328, 592-615 (2000).
-
(2000)
Methods Enzymol.
, vol.328
, pp. 592-615
-
-
Skarnes, W.C.1
-
29
-
-
77952743763
-
Trinucleotide repeat system for sequence specifcity analysis of RNA structure probing reagents
-
Sobczak, K., Michlewski, G., de Mezer, M., Krol, J. & Krzyzosiak, W.J. Trinucleotide repeat system for sequence specifcity analysis of RNA structure probing reagents. Anal. Biochem. 402, 40-46 (2010).
-
(2010)
Anal. Biochem.
, vol.402
, pp. 40-46
-
-
Sobczak, K.1
Michlewski, G.2
De Mezer, M.3
Krol, J.4
Krzyzosiak, W.J.5
-
30
-
-
46249106990
-
Mapping and quantifying mammalian transcriptomes by RNA-Seq
-
Mortazavi, A., Williams, B.A., Mccue, K., Schaeffer, L. & Wold, B. Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat. Methods 5, 621-628 (2008).
-
(2008)
Nat. Methods
, vol.5
, pp. 621-628
-
-
Mortazavi, A.1
Williams, B.A.2
McCue, K.3
Schaeffer, L.4
Wold, B.5
|