-
1
-
-
77956261738
-
Sequence signatures and mRNA concentration can explain two-thirds of protein abundance variation in a human cell line
-
Vogel C., de Sousa Abreu R., Ko D. J., Le S. Y., Shapiro B. A., Burns S. C., Sandhu D., Boutz D. R., Marcotte E. M., Penalva L. O., Sequence signatures and mRNA concentration can explain two-thirds of protein abundance variation in a human cell line Molecular Systems Biology 2010 6, article 400
-
(2010)
Molecular Systems Biology
, vol.6400
-
-
Vogel, C.1
De Sousa Abreu, R.2
Ko, D.J.3
Le, S.Y.4
Shapiro, B.A.5
Burns, S.C.6
Sandhu, D.7
Boutz, D.R.8
Marcotte, E.M.9
Penalva, L.O.10
-
2
-
-
75149196287
-
The mechanism of eukaryotic translation initiation and principles of its regulation
-
Jackson R. J., Hellen C. U. T., Pestova T. V., The mechanism of eukaryotic translation initiation and principles of its regulation Nature Reviews Molecular Cell Biology 2010 11 2 113 127
-
(2010)
Nature Reviews Molecular Cell Biology
, vol.11
, Issue.2
, pp. 113-127
-
-
Jackson, R.J.1
Hellen, C.U.T.2
Pestova, T.V.3
-
3
-
-
60149091189
-
Regulation of translation initiation in eukaryotes: Mechanisms and biological targets
-
Sonenberg N., Hinnebusch A. G., Regulation of translation initiation in eukaryotes: mechanisms and biological targets Cell 2009 136 4 731 745
-
(2009)
Cell
, vol.136
, Issue.4
, pp. 731-745
-
-
Sonenberg, N.1
Hinnebusch, A.G.2
-
4
-
-
5044229348
-
Molecular mechanisms of translational control
-
DOI 10.1038/nrm1488
-
Gebauer F., Hentze M. W., Molecular mechanisms of translational control Nature Reviews Molecular Cell Biology 2004 5 10 827 835 (Pubitemid 39336276)
-
(2004)
Nature Reviews Molecular Cell Biology
, vol.5
, Issue.10
, pp. 827-835
-
-
Gebauer, F.1
Hentze, M.W.2
-
5
-
-
0035802386
-
Structural and functional features of eukaryotic mRNA untranslated regions
-
DOI 10.1016/S0378-1119(01)00674-6, PII S0378111901006746
-
Pesole G., Mignone F., Gissi C., Grillo G., Licciulli F., Liuni S., Structural and functional features of eukaryotic mRNA untranslated regions Gene 2001 276 1-2 73 81 (Pubitemid 32925261)
-
(2001)
Gene
, vol.276
, Issue.1-2
, pp. 73-81
-
-
Pesole, G.1
Mignone, F.2
Gissi, C.3
Grillo, G.4
Licciulli, F.5
Liuni, S.6
-
6
-
-
0033670972
-
CART classification of human 5′; UTR sequences
-
Davuluri R. V., Suzuki Y., Sugano S., Zhang M. Q., CART classification of human 5′; UTR sequences Genome Research 2000 10 11 1807 1816
-
(2000)
Genome Research
, vol.10
, Issue.11
, pp. 1807-1816
-
-
Davuluri, R.V.1
Suzuki, Y.2
Sugano, S.3
Zhang, M.Q.4
-
7
-
-
33646193306
-
Control of mammalian translation by mRNA structure near caps
-
Babendure J. R., Babendure J. L., Ding J. H., Tsien R. Y., Control of mammalian translation by mRNA structure near caps RNA 2006 12 5 851 861
-
(2006)
RNA
, vol.12
, Issue.5
, pp. 851-861
-
-
Babendure, J.R.1
Babendure, J.L.2
Ding, J.H.3
Tsien, R.Y.4
-
9
-
-
0034090845
-
Translation by ribosome shunting on adenovirus and hsp70 mRNAs facilitated by complementarity to 18S rRNA
-
Yueh A., Schneider R. J., Translation by ribosome shunting on adenovirus and hsp70 mRNAs facilitated by complementarity to 18S rRNA Genes and Development 2000 14 4 414 421 (Pubitemid 30131887)
-
(2000)
Genes and Development
, vol.14
, Issue.4
, pp. 414-421
-
-
Yueh, A.1
Schneider, R.J.2
-
10
-
-
33745453438
-
Ribosomal shunting mediated by a translational enhancer element that base pairs to 18S rRNA
-
DOI 10.1073/pnas.0603597103
-
Chappell S. A., Dresios J., Edelman G. M., Mauro V. P., Ribosomal shunting mediated by a translational enhancer element that base pairs to 18S rRNA Proceedings of the National Academy of Sciences of the United States of America 2006 103 25 9488 9493 (Pubitemid 43955852)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.25
, pp. 9488-9493
-
-
Chappell, S.A.1
Dresios, J.2
Edelman, G.M.3
Mauro, V.P.4
-
11
-
-
0038664127
-
Identification and functional analysis of human transcriptional promoters
-
DOI 10.1101/gr.794803
-
Trinklein N. D., Aldred S. J. F., Saldanha A. J., Myers R. M., Identification and functional analysis of human transcriptional promoters Genome Research 2003 13 2 308 312 (Pubitemid 36575778)
-
(2003)
Genome Research
, vol.13
, Issue.2
, pp. 308-312
-
-
Trinklein, N.D.1
Force Aldred, S.J.2
Saldanha, A.J.3
Myers, R.M.4
-
12
-
-
0345874728
-
Multiple variable first exons: A mechanism for cell- and tissue-specific gene regulation
-
DOI 10.1101/gr.1225204
-
Zhang T., Haws P., Wu Q., Multiple variable first exons: a mechanism for celland tissuespecific gene regulation Genome Research 2004 14 1 79 89 (Pubitemid 38088528)
-
(2004)
Genome Research
, vol.14
, Issue.1
, pp. 79-89
-
-
Zhang, T.1
Haws, P.2
Wu, Q.3
-
13
-
-
24644519490
-
The transcriptional landscape of the mammalian genome
-
Carninci P., Kasukawa T., Katayama S., Gough J., Frith M. C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V. B., Brenner S. E., Batalov S., Forrest A. R. R., Zavolan M., Davis M. J., Wilming L. G., Aidinis V., Allen J. E., Ambesi-Impiombato A., Apweiler R., Aturaliya R. N., Bailey T. L., Bansal M., Baxter L., Beisel K. W., Bersano T., Bono H., Chalk A. M., Chiu K. P., Choudhary V., Christoffels A., Clutterbuck D. R., Crowe M. L., Dalla E., Dalrymple B. P., de Bono B., della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C. F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T. R., Gojobori T., Green R. E., Gustincich S., Harbers M., Hayashi Y., Hensch T. K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S. P. T., Kruger A. F., Kummerfeld S. K., Kurochkin I. V., Lareau L. F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K. C., Pavan W. J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J. F., Ring B. Z., Ringwald M., Rost B., Ruan Y., Salzberg S. L., Sandelin A., Schneider C., Schnbach C., Sekiguchi K., Semple C. A. M., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S. L., Tang S., Taylor M. S., Tegner J., Teichmann S. A., Ueda H. R., van Nimwegene E., Verardo R., Wei C. L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S. M., Teasdale R. D., Liu E. T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J. S., Hume D. A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y., The transcriptional landscape of the mammalian genome Science 2005 309 5740 1559 1563
-
(2005)
Science
, vol.309
, Issue.5740
, pp. 1559-1563
-
-
Carninci, P.1
Kasukawa, T.2
Katayama, S.3
Gough, J.4
Frith, M.C.5
Maeda, N.6
Oyama, R.7
Ravasi, T.8
Lenhard, B.9
Wells, C.10
Kodzius, R.11
Shimokawa, K.12
Bajic, V.B.13
Brenner, S.E.14
Batalov, S.15
Forrest, A.R.R.16
Zavolan, M.17
Davis, M.J.18
Wilming, L.G.19
Aidinis, V.20
Allen, J.E.21
Ambesi-Impiombato, A.22
Apweiler, R.23
Aturaliya, R.N.24
Bailey, T.L.25
Bansal, M.26
Baxter, L.27
Beisel, K.W.28
Bersano, T.29
Bono, H.30
Chalk, A.M.31
Chiu, K.P.32
Choudhary, V.33
Christoffels, A.34
Clutterbuck, D.R.35
Crowe, M.L.36
Dalla, E.37
Dalrymple, B.P.38
De Bono, B.39
Della Gatta, G.40
Di Bernardo, D.41
Down, T.42
Engstrom, P.43
Fagiolini, M.44
Faulkner, G.45
Fletcher, C.F.46
Fukushima, T.47
Furuno, M.48
Futaki, S.49
Gariboldi, M.50
Georgii-Hemming, P.51
Gingeras, T.R.52
Gojobori, T.53
Green, R.E.54
Gustincich, S.55
Harbers, M.56
Hayashi, Y.57
Hensch, T.K.58
Hirokawa, N.59
Hill, D.60
Huminiecki, L.61
Iacono, M.62
Ikeo, K.63
Iwama, A.64
Ishikawa, T.65
Jakt, M.66
Kanapin, A.67
Katoh, M.68
Kawasawa, Y.69
Kelso, J.70
Kitamura, H.71
Kitano, H.72
Kollias, G.73
Krishnan, S.P.T.74
Kruger, A.F.75
Kummerfeld, S.K.76
Kurochkin, I.V.77
Lareau, L.F.78
Lazarevic, D.79
Lipovich, L.80
Liu, J.81
Liuni, S.82
McWilliam, S.83
Madan Babu, M.84
Madera, M.85
Marchionni, L.86
Matsuda, H.87
Matsuzawa, S.88
Miki, H.89
Mignone, F.90
Miyake, S.91
Morris, K.92
Mottagui-Tabar, S.93
Mulder, N.94
Nakano, N.95
Nakauchi, H.96
Ng, P.97
Nilsson, R.98
Nishiguchi, S.99
more..
-
14
-
-
0037053410
-
Structural determinants of BRCA1 translational regulation
-
DOI 10.1074/jbc.M109162200
-
Sobczak K., Krzyzosiak W. J., Structural determinants of BRCA1 translational regulation The Journal of Biological Chemistry 2002 277 19 17349 17358 (Pubitemid 34967771)
-
(2002)
Journal of Biological Chemistry
, vol.277
, Issue.19
, pp. 17349-17358
-
-
Sobczak, K.1
Krzyzosiak, W.J.2
-
15
-
-
0025827065
-
Inhibition of translation of transforming growth factor-β3 mRNA by its 5′; untranslated region
-
Arrick B. A., Lee A. L., Grendell R. L., Derynck R., Inhibition of translation of transforming growth factor- 3 mRNA by its 5′; untranslated region Molecular and Cellular Biology 1991 11 9 4306 4313 (Pubitemid 21895823)
-
(1991)
Molecular and Cellular Biology
, vol.11
, Issue.9
, pp. 4306-4313
-
-
Arrick, B.A.1
Lee, A.L.2
Grendell, R.L.3
Derynck, R.4
-
16
-
-
0028153709
-
Enhanced translational efficiency of a novel transforming growth factor 3 mRNA in human breast cancer cells
-
Arrick B. A., Grendell R. L., Griffin L. A., Enhanced translational efficiency of a novel transforming growth factor 3 mRNA in human breast cancer cells Molecular and Cellular Biology 1994 14 1 619 628
-
(1994)
Molecular and Cellular Biology
, vol.14
, Issue.1
, pp. 619-628
-
-
Arrick, B.A.1
Grendell, R.L.2
Griffin, L.A.3
-
17
-
-
0028438188
-
Regulation of protein synthesis by mRNA structure
-
Gray N. K., Hentze M. W., Regulation of protein synthesis by mRNA structure Molecular Biology Reports 1994 19 3 195 200
-
(1994)
Molecular Biology Reports
, vol.19
, Issue.3
, pp. 195-200
-
-
Gray, N.K.1
Hentze, M.W.2
-
18
-
-
12344281782
-
The implications of structured 5′; untranslated regions on translation and disease
-
DOI 10.1016/j.semcdb.2004.11.006, PII S1084952104001107, Protein Synthesis in Health and Disease
-
Pickering B. M., Willis A. E., The implications of structured 5′; untranslated regions on translation and disease Seminars in Cell and Developmental Biology 2005 16 1 39 47 (Pubitemid 40126875)
-
(2005)
Seminars in Cell and Developmental Biology
, vol.16
, Issue.1
, pp. 39-47
-
-
Pickering, B.M.1
Willis, A.E.2
-
19
-
-
0025176473
-
Bidirectional RNA helicase activity of eucaryotic translation initiation factors 4A and 4F
-
Rozen F., Edery I., Meerovitch K., Dever T. E., Merrick W. C., Sonenberg N., Bidirectional RNA helicase activity of eucaryotic translation initiation factors 4A and 4F Molecular and Cellular Biology 1990 10 3 1134 1144
-
(1990)
Molecular and Cellular Biology
, vol.10
, Issue.3
, pp. 1134-1144
-
-
Rozen, F.1
Edery, I.2
Meerovitch, K.3
Dever, T.E.4
Merrick, W.C.5
Sonenberg, N.6
-
20
-
-
73449138471
-
Translation initiation: A critical signalling node in cancer
-
Robert F., Pelletier J., Translation initiation: a critical signalling node in cancer Expert Opinion on Therapeutic Targets 2009 13 11 1279 1293
-
(2009)
Expert Opinion on Therapeutic Targets
, vol.13
, Issue.11
, pp. 1279-1293
-
-
Robert, F.1
Pelletier, J.2
-
21
-
-
0026708669
-
Post-transcriptional regulation of the human transforming growth factor- 1 gene
-
Kim S. J., Park K., Koeller D., Kim K. Y., Wakefield L. M., Sporn M. B., Roberts A. B., Post-transcriptional regulation of the human transforming growth factor- 1 gene The Journal of Biological Chemistry 1992 267 19 13702 13707
-
(1992)
The Journal of Biological Chemistry
, vol.267
, Issue.19
, pp. 13702-13707
-
-
Kim, S.J.1
Park, K.2
Koeller, D.3
Kim, K.Y.4
Wakefield, L.M.5
Sporn, M.B.6
Roberts, A.B.7
-
22
-
-
0027220013
-
An element of the transforming growth factor-β1 5'-untranslated region represses translation and specifically binds a cytosolic factor
-
DOI 10.1210/me.7.6.759
-
Romeo D. S., Park K., Roberts A. B., Sporn M. B., Kim S. J., An element of the transforming growth factor- 1 5′;-untranslated region represses translation and specifically binds a cytosolic factor Molecular Endocrinology 1993 7 6 759 766 (Pubitemid 23207379)
-
(1993)
Molecular Endocrinology
, vol.7
, Issue.6
, pp. 759-766
-
-
Romeo, D.S.1
Park, K.2
Roberts, A.B.3
Sporn, M.B.4
Kim, S.-J.5
-
23
-
-
40049109363
-
Y-box protein-1 controls transforming growth factor-β1 translation in proximal tubular cells
-
DOI 10.1038/sj.ki.5002719, PII 5002719
-
Fraser D. J., Phillips A. O., Zhang X., Van Roeyen C. R., Muehlenberg P., En-Nia A., Mertens P. R., Y-box protein-1 controls transforming growth factor- 1 translation in proximal tubular cells Kidney International 2008 73 6 724 732 (Pubitemid 351323248)
-
(2008)
Kidney International
, vol.73
, Issue.6
, pp. 724-732
-
-
Fraser, D.J.1
Phillips, A.O.2
Zhang, X.3
Van Roeyen, C.R.4
Muehlenberg, P.5
En-Nia, A.6
Mertens, P.R.7
-
24
-
-
77957884765
-
A conserved stem loop motif in the 59untranslated region regulates transforming growth factor- 1 translation
-
Jenkins R. H., Bennagi R., Martin J., Phillips A. O., Redman J. E., Fraser D. J., A conserved stem loop motif in the 59untranslated region regulates transforming growth factor- 1 translation PLoS one 2010 5 8
-
(2010)
PLoS One
, vol.5
, Issue.8
-
-
Jenkins, R.H.1
Bennagi, R.2
Martin, J.3
Phillips, A.O.4
Redman, J.E.5
Fraser, D.J.6
-
25
-
-
40449092645
-
Functional domains of Drosophila UNR in translational control
-
DOI 10.1261/rna.802908
-
Abaza I., Gebauer F., Functional domains of Drosophila UNR in translational control RNA 2008 14 3 482 490 (Pubitemid 351397813)
-
(2008)
RNA
, vol.14
, Issue.3
, pp. 482-490
-
-
Abaza, I.1
Gebauer, F.2
-
26
-
-
84255195583
-
Iron responsive mRNAs: A family of Fe 2+ sensitive riboregulators
-
Goss D. J., Theil E. C., Iron responsive mRNAs: a family of Fe 2+ sensitive riboregulators Accounts of Chemical Research 2011 44 12 1320 1328
-
(2011)
Accounts of Chemical Research
, vol.44
, Issue.12
, pp. 1320-1328
-
-
Goss, D.J.1
Theil, E.C.2
-
27
-
-
65349126484
-
A ferroportin transcript that lacks an iron-responsive element enables duodenal and erythroid precursor cells to evade translational repression
-
Zhang D. L., Hughes R. M., Ollivierre-Wilson H., Ghosh M. C., Rouault T. A., A ferroportin transcript that lacks an iron-responsive element enables duodenal and erythroid precursor cells to evade translational repression Cell Metabolism 2009 9 5 461 473
-
(2009)
Cell Metabolism
, vol.9
, Issue.5
, pp. 461-473
-
-
Zhang, D.L.1
Hughes, R.M.2
Ollivierre-Wilson, H.3
Ghosh, M.C.4
Rouault, T.A.5
-
28
-
-
0034733635
-
A novel mammalian iron-regulated protein involved in intracellular iron metabolism
-
DOI 10.1074/jbc.M000713200
-
Abboud S., Haile D. J., A novel mammalian iron-regulated protein involved in intracellular iron metabolism The Journal of Biological Chemistry 2000 275 26 19906 19912 (Pubitemid 30441595)
-
(2000)
Journal of Biological Chemistry
, vol.275
, Issue.26
, pp. 19906-19912
-
-
Abboud, S.1
Haile, D.J.2
-
29
-
-
0030921671
-
Hereditary hyperferritinemia-cataract syndrome caused by a 29-base pair deletion in the iron responsive element of ferritin L-subunit gene
-
Girelli D., Corrocher R., Bisceglia L., Olivieri O., Zelante L., Panozzo G., Gasparini P., Hereditary hyperferritinemia-cataract syndrome caused by a 29-base pair deletion in the iron responsive element of ferritin L-subunit gene Blood 1997 90 5 2084 2088 (Pubitemid 27377324)
-
(1997)
Blood
, vol.90
, Issue.5
, pp. 2084-2088
-
-
Girelli, D.1
Corrocher, R.2
Bisceglia, L.3
Olivieri, O.4
Zelante, L.5
Panozzo, G.6
Gasparini, P.7
-
30
-
-
0033576625
-
Inhibition of msl-2 splicing by Sex-lethal reveals interaction between U2AF35 and the 3′; splice site AG
-
Merendino L., Guth S., Bilbao D., Martnez C., Valcrcel J., Inhibition of msl-2 splicing by Sex-lethal reveals interaction between U2AF35 and the 3′; splice site AG Nature 1999 402 6763 838 841
-
(1999)
Nature
, vol.402
, Issue.6763
, pp. 838-841
-
-
Merendino, L.1
Guth, S.2
Bilbao, D.3
Martnez, C.4
Valcrcel, J.5
-
31
-
-
0034853637
-
Modulation of msl-2 5′; splice site recognition by Sex-lethal
-
DOI 10.1017/S1355838201010536
-
Forch P., Merendino L., Martinez C., Valcarcel J., Modulation of msl-2 5′; splice site recognition by Sex-lethal RNA 2001 7 9 1185 1191 (Pubitemid 32831349)
-
(2001)
RNA
, vol.7
, Issue.9
, pp. 1185-1191
-
-
Forch, P.1
Merendino, L.2
Martinez, C.3
Valcarcel, J.4
-
32
-
-
23944445369
-
A dual inhibitory mechanism restricts msl-2 mRNA translation for dosage compensation in Drosophila
-
DOI 10.1016/j.cell.2005.06.011, PII S0092867405005945
-
Beckmann K., Grskovic M., Gebauer F., Hentze M. W., A dual inhibitory mechanism restricts msl-2 mRNA translation for dosage compensation in drosophila Cell 2005 122 4 529 540 (Pubitemid 41191152)
-
(2005)
Cell
, vol.122
, Issue.4
, pp. 529-540
-
-
Beckmann, K.1
Grskovic, M.2
Gebauer, F.3
Hentze, M.W.4
-
33
-
-
32044436719
-
Sex-lethal imparts a sex-specific function to UNR by recruiting it to the msl-2 mRNA 3′; UTR: Translational repression for dosage compensation
-
DOI 10.1101/gad.371406
-
Duncan K., Grskovic M., Strein C., Beckmann K., Niggeweg R., Abaza I., Gebauer F., Wilm M., Hentze M. W., Sex-lethal imparts a sex-specific function to UNR by recruiting it to the msl-2 mRNA 3′; UTR: translational repression for dosage compensation Genes Development 2006 20 3 368 379 (Pubitemid 43200290)
-
(2006)
Genes and Development
, vol.20
, Issue.3
, pp. 368-379
-
-
Duncan, K.1
Grskovic, M.2
Strein, C.3
Beckmann, K.4
Niggeweg, R.5
Abaza, I.6
Gebauer, F.7
Wilm, M.8
Hentze, M.W.9
-
34
-
-
32044461068
-
Drosophila UNR is required for translational repression of male-specific lethal 2 mRNA during regulation of X-chromosome dosage compensation
-
DOI 10.1101/gad.371906
-
Abaza I., Coll O., Patalano S., Gebauer F., Drosophila UNR is required for translational repression of male-specific lethal 2 mRNA during regulation of X-chromosome dosage compensation Genes Development 2006 20 3 380 389 (Pubitemid 43200291)
-
(2006)
Genes and Development
, vol.20
, Issue.3
, pp. 380-389
-
-
Abaza, I.1
Coll, O.2
Patalano, S.3
Gebauer, F.4
-
35
-
-
70449638286
-
The SXL-UNR corepressor complex uses a PABP-mediated mechanism to inhibit ribosome recruitment to msl-2 mRNA
-
Duncan K. E., Strein C., Hentze M. W., The SXL-UNR corepressor complex uses a PABP-mediated mechanism to inhibit ribosome recruitment to msl-2 mRNA Molecular Cell 2009 36 4 571 582
-
(2009)
Molecular Cell
, vol.36
, Issue.4
, pp. 571-582
-
-
Duncan, K.E.1
Strein, C.2
Hentze, M.W.3
-
36
-
-
79958276198
-
Translational control via protein-regulated upstream open reading frames
-
Medenbach J., Seiler M., Hentze M. W., Translational control via protein-regulated upstream open reading frames Cell 2011 145 6 902 913
-
(2011)
Cell
, vol.145
, Issue.6
, pp. 902-913
-
-
Medenbach, J.1
Seiler, M.2
Hentze, M.W.3
-
37
-
-
1542320700
-
Competition of CUGBP1 and calreticulin for the regulation of p21 translation determines cell fate
-
DOI 10.1038/sj.emboj.7600052
-
Iakova P., Wang G. L., Timchenko L., Michalak M., Pereira-Smith O. M., Smith J. R., Timchenko N. A., Competition of CUGBP1 and calreticulin for the regulation of p21 translation determines cell fate The EMBO Journal 2004 23 2 406 417 (Pubitemid 38294505)
-
(2004)
EMBO Journal
, vol.23
, Issue.2
, pp. 406-417
-
-
Iakova, P.1
Wang, G.-L.2
Timchenko, L.3
Michalak, M.4
Pereira-Smith, O.M.5
Smith, J.R.6
Timchenko, N.A.7
-
39
-
-
17044409660
-
UAUG and uORFs in human and rodent 5′; untranslated mRNAs
-
Iacono M., Mignone F., Pesole G., UAUG and uORFs in human and rodent 5′; untranslated mRNAs Gene 2005 349 97 105
-
(2005)
Gene
, vol.349
, pp. 97-105
-
-
Iacono, M.1
Mignone, F.2
Pesole, G.3
-
40
-
-
61649096857
-
Upstream sequence elements direct post-transcriptional regulation of gene expression under stress conditions in yeast
-
Lawless C., Pearson R. D., Selley J. N., Smirnova J. B., Grant C. M., Ashe M. P., Pavitt G. D., Hubbard S. J., Upstream sequence elements direct post-transcriptional regulation of gene expression under stress conditions in yeast BMC Genomics 2009 10, article 7
-
(2009)
BMC Genomics
, vol.107
-
-
Lawless, C.1
Pearson, R.D.2
Selley, J.N.3
Smirnova, J.B.4
Grant, C.M.5
Ashe, M.P.6
Pavitt, G.D.7
Hubbard, S.J.8
-
41
-
-
34548133262
-
Bioinformatic analysis of post-transcriptional regulation by uORF in human and mouse
-
DOI 10.1016/j.febslet.2007.07.057, PII S0014579307008344
-
Matsui M., Yachie N., Okada Y., Saito R., Tomita M., Bioinformatic analysis of post-transcriptional regulation by uORF in human and mouse The FEBS Letters 2007 581 22 4184 4188 (Pubitemid 47301851)
-
(2007)
FEBS Letters
, vol.581
, Issue.22
, pp. 4184-4188
-
-
Matsui, M.1
Yachie, N.2
Okada, Y.3
Saito, R.4
Tomita, M.5
-
42
-
-
0035945260
-
Constraints on reinitiation of translation in mammals
-
Kozak M., Constraints on reinitiation of translation in mammals Nucleic Acids Research 2001 29 24 5226 5232 (Pubitemid 34065441)
-
(2001)
Nucleic Acids Research
, vol.29
, Issue.24
, pp. 5226-5232
-
-
Kozak, M.1
-
43
-
-
0034459468
-
Upstream open reading frames as regulators of mRNA translation
-
DOI 10.1128/MCB.20.23.8635-8642.2000
-
Morris D. R., Geballe A. P., Upstream open reading frames as regulators of mRNA translation Molecular and Cellular Biology 2000 20 23 8635 8642 (Pubitemid 32245897)
-
(2000)
Molecular and Cellular Biology
, vol.20
, Issue.23
, pp. 8635-8642
-
-
Morris, D.R.1
Geballe, A.P.2
-
44
-
-
7444253965
-
Analysis of small human proteins reveals the translation of upstream open reading frames of mRNAs
-
Oyama M., Itagaki C., Hata H., Suzuki Y., Izumi T., Natsume T., Isobe T., Sugano S., Analysis of small human proteins reveals the translation of upstream open reading frames of mRNAs Genome Research 2004 14 10 2048 2052 (Pubitemid 39440185)
-
(2004)
Genome Research
, vol.14
, Issue.10
, pp. 2048-2052
-
-
Oyama, M.1
Itagaki, C.2
Hata, H.3
Suzuki, Y.4
Izumi, T.5
Natsume, T.6
Isobe, T.7
Sugano, S.8
-
45
-
-
0033621372
-
A highly conserved mechanism of regulated ribosome stalling mediated by fungal arginine attenuator peptides that appears independent of the charging status of arginyl-tRNAs
-
DOI 10.1074/jbc.274.53.37565
-
Wang Z., Gaba A., Sachs M. S., A highly conserved mechanism of regulated ribosome stalling mediated by fungal arginine attenuator peptides that appears independent of the charging status of arginyl-tRNAs The Journal of Biological Chemistry 1999 274 53 37565 37574 (Pubitemid 30026811)
-
(1999)
Journal of Biological Chemistry
, vol.274
, Issue.53
, pp. 37565-37574
-
-
Wang, Z.1
Gaba, A.2
Sachs, M.S.3
-
46
-
-
0035890071
-
Physical evidence for distinct mechanisms of translational control by upstream open reading frames
-
DOI 10.1093/emboj/20.22.6453
-
Gaba A., Wang Z., Krishnamoorthy T., Hinnebusch A. G., Sachs M. S., Physical evidence for distinct mechanisms of translational control by upstream open reading frames The EMBO Journal 2001 20 22 6453 6463 (Pubitemid 33078718)
-
(2001)
EMBO Journal
, vol.20
, Issue.22
, pp. 6453-6463
-
-
Gaba, A.1
Wang, Z.2
Krishnamoorthy, T.3
Hinnebusch, A.G.4
Sachs, M.S.5
-
47
-
-
84862777571
-
Arginine changes the conformation of the arginine attenuator peptide relative to the ribosome tunnel
-
Wu C., Wei J., Lin P. J., Arginine changes the conformation of the arginine attenuator peptide relative to the ribosome tunnel Journal of Molecular Biology 2012 416 4 518 533
-
(2012)
Journal of Molecular Biology
, vol.416
, Issue.4
, pp. 518-533
-
-
Wu, C.1
Wei, J.2
Lin, P.J.3
-
48
-
-
1642570293
-
A nascent polypeptide domain that can regulate translation elongation
-
DOI 10.1073/pnas.0400554101
-
Fang P., Spevak C. C., Wu C., Sachs M. S., A nascent polypeptide domain that can regulate translation elongation Proceedings of the National Academy of Sciences of the United States of America 2004 101 12 4059 4064 (Pubitemid 38405883)
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, Issue.12
, pp. 4059-4064
-
-
Fang, P.1
Spevak, C.C.2
Wu, C.3
Sachs, M.S.4
-
49
-
-
0022512237
-
Multiple upstream AUG codons mediate translational control of GCN4
-
Mueller P. P., Hinnebusch A. G., Multiple upstream AUG codons mediate translational control of GCN4 Cell 1986 45 2 201 207 (Pubitemid 16043423)
-
(1986)
Cell
, vol.45
, Issue.2
, pp. 201-207
-
-
Mueller, P.P.1
Hinnebusch, A.G.2
-
50
-
-
27144510561
-
Translational regulation of GCN4 and the general amino acid control of yeast
-
DOI 10.1146/annurev.micro.59.031805.133833
-
Hinnebusch A. G., Translational regulation of GCN4 and the general amino acid control of yeast Annual Review of Microbiology 2005 59 1 407 450 (Pubitemid 41507438)
-
(2005)
Annual Review of Microbiology
, vol.59
, pp. 407-450
-
-
Hinnebusch, A.G.1
-
51
-
-
80053056984
-
The CPT1C 5′;UTR contains a repressing upstream open reading frame that is regulated by cellular energy availability and AMPK
-
Lohse I., Reilly P., Zaugg K., The CPT1C 5′;UTR contains a repressing upstream open reading frame that is regulated by cellular energy availability and AMPK PLoS one 2011 6 9
-
(2011)
PLoS One
, vol.6
, Issue.9
-
-
Lohse, I.1
Reilly, P.2
Zaugg, K.3
-
52
-
-
0028949735
-
The relationship between eukaryotic translation and mRNA stability. A short upstream open reading frame strongly inhibits translational initiation and greatly accelerates mRNA degradation in the yeast Saccharomyces cerevisiae
-
Oliveira C. C., McCarthy J. E. G., The relationship between eukaryotic translation and mRNA stability. A short upstream open reading frame strongly inhibits translational initiation and greatly accelerates mRNA degradation in the yeast Saccharomyces cerevisiae The Journal of Biological Chemistry 1995 270 15 8936 8943
-
(1995)
The Journal of Biological Chemistry
, vol.270
, Issue.15
, pp. 8936-8943
-
-
Oliveira, C.C.1
McCarthy, J.E.G.2
-
53
-
-
77957195626
-
Upstream open reading frames: Molecular switches in (patho)physiology
-
Wethmar K., Smink J. J., Leutz A., Upstream open reading frames: molecular switches in (patho)physiology Bioessays 2010 32 10 885 893
-
(2010)
Bioessays
, vol.32
, Issue.10
, pp. 885-893
-
-
Wethmar, K.1
Smink, J.J.2
Leutz, A.3
-
54
-
-
0032900535
-
Mutation of the CDKN2A 5' UTR creates an aberrant initiation codon and predisposes to melanoma
-
DOI 10.1038/5082
-
Liu L., Dilworth D., Gao L. Z., Monzon J., Summers A., Lassam N., Hogg D., Mutation of the CDKN2A 5′; UTR creates an aberrant initiation codon and predisposes to melanoma Nature Genetics 1999 21 1 128 132 (Pubitemid 29036299)
-
(1999)
Nature Genetics
, vol.21
, Issue.1
, pp. 128-132
-
-
Liu, L.1
Dilworth, D.2
Gao, L.3
Monzon, J.4
Summers, A.5
Lassam, N.6
Hogg, D.7
-
55
-
-
0031975482
-
An activating splice donor mutation in the thrombopoietin gene causes hereditary thrombocythaemia
-
DOI 10.1038/ng0198-49
-
Wiestner A., Schlemper R. J., van der Maas A. P. C., Skoda R. C., An activating splice donor mutation in the thrombopoietin gene causes hereditary thrombocythaemia Nature Genetics 1998 18 1 49 52 (Pubitemid 28027878)
-
(1998)
Nature Genetics
, vol.18
, Issue.1
, pp. 49-52
-
-
Wiestner, A.1
Schlemper, R.J.2
Van Der Maas, A.P.C.3
Skoda, R.C.4
-
56
-
-
66649123255
-
Erratum: Loss-of-function mutations of an inhibitory upstream ORF in the human hairless transcript cause Marie Unna hereditary hypotrichosis (Nature Genetics (2009) 41 (228-233))
-
Wen Y. R., Liu Y., Xu Y. M., Zhao Y., Hua R., Wang K., Sun M., Li Y., Yang S., Zhang X. J., Kruse R., Cichon S., Betz R. C., Nthen M. M., Van Steensel M. A. M., Van Geel M., Steijlen P. M., Hohl D., Huber M., Dunnill G. S., Kennedy C., Messenger A., Munro C. S., Terrinoni A., Hovnanian A., Bodemer C., De Prost Y., Paller A. S., Irvine A. D., Sinclair R., Green J., Shang D., Liu Q., Luo Y., Jiang L., Chen H. D., Lo W. H. Y., McLean W. H. I., He C. D., Zhang X., Erratum: loss-of-function mutations of an inhibitory upstream ORF in the human hairless transcript cause Marie Unna hereditary hypotrichosis (Nature Genetics (2009) 41 (228-233)) Nature Genetics 2009 41 6 762
-
(2009)
Nature Genetics
, vol.41
, Issue.6
, pp. 762
-
-
Wen, Y.R.1
Liu, Y.2
Xu, Y.M.3
Zhao, Y.4
Hua, R.5
Wang, K.6
Sun, M.7
Li, Y.8
Yang, S.9
Zhang, X.J.10
Kruse, R.11
Cichon, S.12
Betz, R.C.13
Nthen, M.M.14
Van Steensel, M.A.M.15
Van Geel, M.16
Steijlen, P.M.17
Hohl, D.18
Huber, M.19
Dunnill, G.S.20
Kennedy, C.21
Messenger, A.22
Munro, C.S.23
Terrinoni, A.24
Hovnanian, A.25
Bodemer, C.26
De Prost, Y.27
Paller, A.S.28
Irvine, A.D.29
Sinclair, R.30
Green, J.31
Shang, D.32
Liu, Q.33
Luo, Y.34
Jiang, L.35
Chen, H.D.36
Lo, W.H.Y.37
McLean, W.H.I.38
He, C.D.39
Zhang, X.40
more..
-
57
-
-
19944426652
-
Regulatory mutations in transforming growth factor-β3 gene cause arrhythmogenic right ventricular cardiomyopathy type 1
-
DOI 10.1016/j.cardiores.2004.10.005, PII S0008636304004407
-
Beffagna G., Occhi G., Nava A., Vitiello L., Ditadi A., Basso C., Bauce B., Carraro G., Thiene G., Towbin J. A., Danieli G. A., Rampazzo A., Regulatory mutations in transforming growth factor- 3 gene cause arrhythmogenic right ventricular cardiomyopathy type 1 Cardiovascular Research 2005 65 2 366 373 (Pubitemid 40082478)
-
(2005)
Cardiovascular Research
, vol.65
, Issue.2
, pp. 366-373
-
-
Beffagna, G.1
Occhi, G.2
Nava, A.3
Vitiello, L.4
Ditadi, A.5
Basso, C.6
Bauce, B.7
Carraro, G.8
Thiene, G.9
Towbin, J.A.10
Danieli, G.A.11
Rampazzo, A.12
-
59
-
-
0031984909
-
Mutation in the 5′; noncoding region of the SRY gene in an XY sex-reversed patient
-
Poulat F., Desclozeaux M., Tuffery S., Jay P., Boizet B., Berta P., Mutation in the 5′; noncoding region of the SRY gene in an XY sex-reversed patient Human Mutation 1998 10 1 S192 S194
-
(1998)
Human Mutation
, vol.10
, Issue.1
-
-
Poulat, F.1
Desclozeaux, M.2
Tuffery, S.3
Jay, P.4
Boizet, B.5
Berta, P.6
-
60
-
-
18644374446
-
Mutations in IRF6 cause Van der Woude and popliteal pterygium syndromes
-
Kondo S., Schutte B. C., Richardson R. J., Bjork B. C., Knight A. S., Watanabe Y., Howard E., Ferreira de Lima R. L. L., Daack-Hirsch S., Sander A., McDonald-McGinn D. M., Zackai E. H., Lammer E. J., Aylsworth A. S., Ardinger H. H., Lidral A. C., Pober B. R., Moreno L., Arcos-Burgos M., Valencia C., Houdayer C., Bahuau M., Moretti-Ferreira D., Richieri-Costa A., Dixon M. J., Murray J. C., Mutations in IRF6 cause Van der Woude and popliteal pterygium syndromes Nature Genetics 2002 32 2 285 289
-
(2002)
Nature Genetics
, vol.32
, Issue.2
, pp. 285-289
-
-
Kondo, S.1
Schutte, B.C.2
Richardson, R.J.3
Bjork, B.C.4
Knight, A.S.5
Watanabe, Y.6
Howard, E.7
Ferreira De Lima, R.L.L.8
Daack-Hirsch, S.9
Sander, A.10
McDonald-Mcginn, D.M.11
Zackai, E.H.12
Lammer, E.J.13
Aylsworth, A.S.14
Ardinger, H.H.15
Lidral, A.C.16
Pober, B.R.17
Moreno, L.18
Arcos-Burgos, M.19
Valencia, C.20
Houdayer, C.21
Bahuau, M.22
Moretti-Ferreira, D.23
Richieri-Costa, A.24
Dixon, M.J.25
Murray, J.C.26
more..
-
61
-
-
0036907704
-
Molecular analysis of the cyclic AMP-dependent protein kinase A (PKA) regulatory subunit 1A (PRKAR1A) gene in patients with carney complex and primary pigmented nodular adrenocortical disease (PPNAD) reveals novel mutations and clues for pathophysiology: Augmented PKA signaling is associated with adrenal tumorigenesis in PPNAD
-
DOI 10.1086/344579
-
Groussin L., Kirschner L. S., Vincent-Dejean C., Perlemoine K., Jullian E., Delemer B., Zacharieva S., Pignatelli D., Carney J. A., Luton J. P., Bertagna X., Stratakis C. A., Bertherat J., Molecular analysis of the cyclic AMP-dependent protein kinase A (PKA) regulatory subunit 1A (PRKAR1A) gene in patients with carney complex and primary pigmented nodular adrenocortical disease (PPNAD) reveals novel mutations and clues for pathophysiology: augmented PKA signaling is associated with adrenal tumorigenesis in PPNAD American Journal of Human Genetics 2002 71 6 1433 1442 (Pubitemid 36018745)
-
(2002)
American Journal of Human Genetics
, vol.71
, Issue.6
, pp. 1433-1442
-
-
Groussin, L.1
Kirschner, L.S.2
Vincent-Dejean, C.3
Perlemoine, K.4
Jullian, E.5
Delemer, B.6
Zacharieva, S.7
Pignatelli, D.8
Carney, J.A.9
Luton, J.P.10
Bertagna, X.11
Stratakis, C.A.12
Bertherat, J.13
-
62
-
-
0034039578
-
Mutations in the gene encoding the serine protease inhibitor, Kazal type 1 are associated with chronic pancreatitis
-
DOI 10.1038/76088
-
Witt H., Luck W., Hennies H. C., Claen M., Kage A., La U., Landt O., Becker M., Mutations in the gene encoding the serine protease inhibitor, Kazal type 1 are associated with chronic pancreatitis Nature Genetics 2000 25 2 213 216 (Pubitemid 30394996)
-
(2000)
Nature Genetics
, vol.25
, Issue.2
, pp. 213-216
-
-
Witt, H.1
Luck, W.2
Hennies, H.C.3
Classen, M.4
Kage, A.5
Lass, U.6
Landt, O.7
Becker, M.8
-
63
-
-
0025921733
-
The G→A mutation at position +22 3′; to the cap site of the -globin gene as a possible cause for a -thalassemia
-
Oner R., Agarwal S., Dimovski A. J., Efremov G. D., Petkov G. H., Altay C., Gurgey A., Huisman T. H. J., The G→A mutation at position +22 3′; to the cap site of the -globin gene as a possible cause for a -thalassemia Hemoglobin 1991 15 1-2 67 76
-
(1991)
Hemoglobin
, vol.15
, Issue.12
, pp. 67-76
-
-
Oner, R.1
Agarwal, S.2
Dimovski, A.J.3
Efremov, G.D.4
Petkov, G.H.5
Altay, C.6
Gurgey, A.7
Huisman, T.H.J.8
-
64
-
-
80455179726
-
ICLIPtranscriptome-wide mapping of protein-RNA interactions with individual nucleotide resolution
-
ARTICLE 2638
-
Konig J., Zarnack K., Rot G., Curk T., Kayikci M., Zupan B., Turner D. J., Luscombe N. M., Ule J., ICLIPtranscriptome-wide mapping of protein-RNA interactions with individual nucleotide resolution Journal of Visualized Experiments 2011 50, article 2638
-
(2011)
Journal of Visualized Experiments
, Issue.50
-
-
Konig, J.1
Zarnack, K.2
Rot, G.3
Curk, T.4
Kayikci, M.5
Zupan, B.6
Turner, D.J.7
Luscombe, N.M.8
Ule, J.9
-
65
-
-
0034459468
-
Upstream open reading frames as regulators of mRNA translation
-
DOI 10.1128/MCB.20.23.8635-8642.2000
-
Morris D. R., Geballe A. P., Upstream open reading frames as regulators of mRNA translation Molecular and Cellular Biology 2000 20 23 8635 8642 (Pubitemid 32245897)
-
(2000)
Molecular and Cellular Biology
, vol.20
, Issue.23
, pp. 8635-8642
-
-
Morris, D.R.1
Geballe, A.P.2
-
66
-
-
33644876958
-
TRANSFAC and its module TRANSCompel: Transcriptional gene regulation in eukaryotes
-
Matys V., Kel-Margoulis O. V., Fricke E., Liebich I., Land S., Barre-Dirrie A., Reuter I., Chekmenev D., Krull M., Hornischer K., Voss N., Stegmaier P., Lewicki-Potapov B., Saxel H., Kel A. E., Wingender E., TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes Nucleic Acids Research 2006 34 D108 D110
-
(2006)
Nucleic Acids Research
, vol.34
-
-
Matys, V.1
Kel-Margoulis, O.V.2
Fricke, E.3
Liebich, I.4
Land, S.5
Barre-Dirrie, A.6
Reuter, I.7
Chekmenev, D.8
Krull, M.9
Hornischer, K.10
Voss, N.11
Stegmaier, P.12
Lewicki-Potapov, B.13
Saxel, H.14
Kel, A.E.15
Wingender, E.16
-
67
-
-
70350518091
-
Identification of a novel functional deletion variant in the 5′;-UTR of the DJ-1 gene
-
10105
-
Keyser R. J., van der Merwe L., Venter M., Kinnear C., Warnich L., Carr J., Bardien S., Identification of a novel functional deletion variant in the 5′;-UTR of the DJ-1 gene BMC Medical Genetics 2009 10, article 105
-
(2009)
BMC Medical Genetics
-
-
Keyser, R.J.1
Van Der Merwe, L.2
Venter, M.3
Kinnear, C.4
Warnich, L.5
Carr, J.6
Bardien, S.7
|