메뉴 건너뛰기




Volumn 467, Issue 7311, 2010, Pages 103-107

Genome-wide measurement of RNA secondary structure in yeast

Author keywords

[No Author keywords available]

Indexed keywords

ENZYME; MESSENGER RNA; RNA; FUNGAL RNA;

EID: 77956306662     PISSN: 00280836     EISSN: 14764687     Source Type: Journal    
DOI: 10.1038/nature09322     Document Type: Article
Times cited : (618)

References (20)
  • 1
    • 0037388094 scopus 로고    scopus 로고
    • Genome-wide analysis of mRNA translation profiles in Saccharomyces cerevisiae
    • Arava, Y. et al. Genome-wide analysis of mRNA translation profiles in Saccharomyces cerevisiae. Proc Natl Acad Sci USA 100, 3889-3894 (2003).
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 3889-3894
    • Arava, Y.1
  • 2
    • 0037197892 scopus 로고    scopus 로고
    • Precision and functional specificity in mRNA decay
    • Wang, Y. et al. Precision and functional specificity in mRNA decay. Proc. Natl Acad. Sci. USA 99, 5860-5865 (2002).
    • (2002) Proc. Natl Acad. Sci. USA , vol.99 , pp. 5860-5865
    • Wang, Y.1
  • 3
    • 0034644626 scopus 로고    scopus 로고
    • Plasma membrane compartmentalization in yeast by messenger RNA transport and a septin diffusion barrier
    • Takizawa, P. A., DeRisi, J. L., Wilhelm, J. E. & Vale, R. D. Plasma membrane compartmentalization in yeast by messenger RNA transport and a septin diffusion barrier. Science 290, 341-344 (2000).
    • (2000) Science , vol.290 , pp. 341-344
    • Takizawa, P.A.1    Derisi, J.L.2    Wilhelm, J.E.3    Vale, R.D.4
  • 4
    • 0141482078 scopus 로고    scopus 로고
    • Widespread cytoplasmic mRNA transport in yeast: Identification of 22 bud-localized transcripts using DNA microarray analysis
    • Shepard, K. A. et al. Widespread cytoplasmic mRNA transport in yeast: identification of 22 bud-localized transcripts using DNA microarray analysis. Proc. Natl Acad. Sci. USA 100, 11429-11434 (2003).
    • (2003) Proc. Natl Acad. Sci. USA , vol.100 , pp. 11429-11434
    • Shepard, K.A.1
  • 5
    • 20444478991 scopus 로고    scopus 로고
    • Riboswitches as versatile gene control elements
    • Tucker, B. J. & Breaker, R. R. Riboswitches as versatile gene control elements. Curr. Opin. Struct. Biol. 15, 342-348 (2005).
    • (2005) Curr. Opin. Struct. Biol. , vol.15 , pp. 342-348
    • Tucker, B.J.1    Breaker, R.R.2
  • 6
    • 34748821761 scopus 로고    scopus 로고
    • The role of site accessibility in microRNA target recognition
    • Kertesz, M., Iovino, N., Unnerstall, U., Gaul, U. & Segal, E. The role of site accessibility in microRNA target recognition. Nature Genet. 39, 1278-1284 (2007).
    • (2007) Nature Genet. , vol.39 , pp. 1278-1284
    • Kertesz, M.1    Iovino, N.2    Unnerstall, U.3    Gaul, U.4    Segal, E.5
  • 8
    • 34250729138 scopus 로고    scopus 로고
    • Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs
    • Rinn, J. L. et al. Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs. Cell 129, 1311-1323 (2007).
    • (2007) Cell , vol.129 , pp. 1311-1323
    • Rinn, J.L.1
  • 9
    • 8644229237 scopus 로고    scopus 로고
    • Structure of the Tetrahymena ribozyme: Base triple sandwich and metal ion at the active site
    • Guo, F., Gooding, A. R. & Cech, T. R. Structure of the Tetrahymena ribozyme: base triple sandwich and metal ion at the active site. Mol. Cell 16, 351-362 (2004).
    • (2004) Mol. Cell , vol.16 , pp. 351-362
    • Guo, F.1    Gooding, A.R.2    Cech, T.R.3
  • 10
    • 0036928186 scopus 로고    scopus 로고
    • Asymmetric sorting of ash1p in yeast results from inhibition of translation by localization elements in the mRNA
    • Chartrand, P., Meng, X. H., Huttelmaier, S., Donato, D. & Singer, R. H. Asymmetric sorting of ash1p in yeast results from inhibition of translation by localization elements in the mRNA. Mol. Cell 10, 1319-1330 (2002).
    • (2002) Mol. Cell , vol.10 , pp. 1319-1330
    • Chartrand, P.1    Meng, X.H.2    Huttelmaier, S.3    Donato, D.4    Singer, R.H.5
  • 11
    • 49649116679 scopus 로고    scopus 로고
    • A small stem loop element directs internal initiation of the URE2 internal ribosome entry site in Saccharomyces cerevisiae
    • Reineke, L. C., Komar, A. A., Caprara, M. G. & Merrick, W. C. A small stem loop element directs internal initiation of the URE2 internal ribosome entry site in Saccharomyces cerevisiae. J. Biol. Chem. 283, 19011-19025 (2008).
    • (2008) J. Biol. Chem. , vol.283 , pp. 19011-19025
    • Reineke, L.C.1    Komar, A.A.2    Caprara, M.G.3    Merrick, W.C.4
  • 12
    • 0036301332 scopus 로고    scopus 로고
    • Secondary structure prediction for aligned RNA sequences
    • Hofacker, I. L., Fekete, M. & Stadler, P. F. Secondary structure prediction for aligned RNA sequences. J. Mol. Biol. 319, 1059-1066 (2002).
    • (2002) J. Mol. Biol. , vol.319 , pp. 1059-1066
    • Hofacker, I.L.1    Fekete, M.2    Stadler, P.F.3
  • 13
    • 68449092202 scopus 로고    scopus 로고
    • Architecture and secondary structure of an entire HIV-1 RNA genome
    • Watts, J. M. et al. Architecture and secondary structure of an entire HIV-1 RNA genome. Nature 460, 711-716 (2009).
    • (2009) Nature , vol.460 , pp. 711-716
    • Watts, J.M.1
  • 14
    • 2442626706 scopus 로고    scopus 로고
    • Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure
    • Mathews, D. H. et al. Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure. Proc. Natl Acad. Sci. USA 101, 7287-7292 (2004).
    • (2004) Proc. Natl Acad. Sci. USA , vol.101 , pp. 7287-7292
    • Mathews, D.H.1
  • 15
    • 33646838978 scopus 로고    scopus 로고
    • A periodic pattern of mRNA secondary structure created by the genetic code
    • Shabalina, S. A., Ogurtsov, A. Y. & Spiridonov, N. A. A periodic pattern of mRNA secondary structure created by the genetic code. Nucleic Acids Res. 34, 2428-2437 (2006).
    • (2006) Nucleic Acids Res. , vol.34 , pp. 2428-2437
    • Shabalina, S.A.1    Ogurtsov, A.Y.2    Spiridonov, N.A.3
  • 16
    • 62549134121 scopus 로고    scopus 로고
    • Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling
    • Ingolia, N. T., Ghaemmaghami, S., Newman, J. R. S. & Weissman, J. S. Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling. Science 324, 218-223 (2009).
    • (2009) Science , vol.324 , pp. 218-223
    • Ingolia, N.T.1    Ghaemmaghami, S.2    Newman, J.R.S.3    Weissman, J.S.4
  • 17
    • 27144555357 scopus 로고    scopus 로고
    • Regulation of translation via mRNA structure in prokaryotes and eukaryotes
    • Kozak, M. Regulation of translation via mRNA structure in prokaryotes and eukaryotes. Gene 361, 13-37 (2005).
    • (2005) Gene , vol.361 , pp. 13-37
    • Kozak, M.1
  • 18
    • 64849114915 scopus 로고    scopus 로고
    • Coding-sequence determinants of gene expression in Escherichia coli
    • Kudla, G., Murray, A. W., Tollervey, D. & Plotkin, J. B. Coding-sequence determinants of gene expression in Escherichia coli. Science 324, 255-258 (2009).
    • (2009) Science , vol.324 , pp. 255-258
    • Kudla, G.1    Murray, A.W.2    Tollervey, D.3    Plotkin, J.B.4
  • 19
    • 0034069495 scopus 로고    scopus 로고
    • Gene ontology: Tool for the unification of biology
    • The Gene Ontology Consortium
    • Ashburner, M. et al. Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nature Genet. 25, 25-29 (2000).
    • (2000) Nature Genet. , vol.25 , pp. 25-29
    • Ashburner, M.1
  • 20
    • 38549120240 scopus 로고    scopus 로고
    • The signal sequence coding region promotes nuclear export of mRNA
    • Palazzo, A. F. et al. The signal sequence coding region promotes nuclear export of mRNA. PLoS Biol. 5, e322 (2007).
    • (2007) PLoS Biol. , vol.5
    • Palazzo, A.F.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.