-
1
-
-
4644355051
-
Structural basis for the variation in triclosan affinity to enoyl reductases
-
DOI 10.1016/j.jmb.2004.08.033, PII S0022283604010113
-
Pidugu LS, Kapoor M, Surolia N, Surolia A, Suguna K (2004) Structural basis for the variation in triclosan affinity to enoyl reductases. J Mol Biol 343:147-155. (Pubitemid 39277454)
-
(2004)
Journal of Molecular Biology
, vol.343
, Issue.1
, pp. 147-155
-
-
Pidugu, L.S.1
Kapoor, M.2
Surolia, N.3
Surolia, A.4
Suguna, K.5
-
2
-
-
67649537863
-
Diversity in enoyl-acyl carrier protein reductases
-
Massengo-Tiasse RP, Cronan JE (2009) Diversity in enoyl-acyl carrier protein reductases. Cell Mol Life Sci 66:1507-1517.
-
(2009)
Cell Mol Life Sci
, vol.66
, pp. 1507-1517
-
-
Massengo-Tiasse, R.P.1
Cronan, J.E.2
-
3
-
-
38949097460
-
Inhibitors of FabI, an enzyme drug target in the bacterial fatty acid biosynthesis pathway
-
Lu H, Tonge PJ (2008) Inhibitors of FabI, an enzyme drug target in the bacterial fatty acid biosynthesis pathway. Acc Chem Res 41:11-20.
-
(2008)
Acc Chem Res
, vol.41
, pp. 11-20
-
-
Lu, H.1
Tonge, P.J.2
-
4
-
-
70349301459
-
The origin of malignant malaria
-
Rich SM, Leendertz FH, Xu G, LeBreton M, Djoko CF, Aminake MN, Takang EE, Diffo JL, Pike BL, Rosenthal BM, Formenty P, Boesch C, Ayala FJ, Wolfe ND. (2009) The origin of malignant malaria. Proc Natl Acad Sci USA 106:14902-14907.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 14902-14907
-
-
Rich, S.M.1
Leendertz, F.H.2
Xu, G.3
LeBreton, M.4
Djoko, C.F.5
Aminake, M.N.6
Takang, E.E.7
Diffo, J.L.8
Pike, B.L.9
Rosenthal, B.M.10
Formenty, P.11
Boesch, C.12
Ayala, F.J.13
Wolfe, N.D.14
-
5
-
-
0033592365
-
Kinetic and structural characteristics of the inhibition of enoyl (acyl carrier protein) reductase by triclosan
-
Ward WH, Holdgate GA, Rowsell S, McLean EG, Pauptit RA, Clayton E, Nichols WW, Colls JG, Minshull CA, Jude DA, Mistry A, Timms D, Camble R, Hales NJ, Britton CJ, Taylor IW. (1999) Kinetic and structural characteristics of the inhibition of enoyl (acyl carrier protein) reductase by triclosan. Biochemistry 38:12514-12525.
-
(1999)
Biochemistry
, vol.38
, pp. 12514-12525
-
-
Ward, W.H.1
Holdgate, G.A.2
Rowsell, S.3
McLean, E.G.4
Pauptit, R.A.5
Clayton, E.6
Nichols, W.W.7
Colls, J.G.8
Minshull, C.A.9
Jude, D.A.10
Mistry, A.11
Timms, D.12
Camble, R.13
Hales, N.J.14
Britton, C.J.15
Taylor, I.W.16
-
6
-
-
33847779109
-
Enoyl reductases as targets for the development of anti-tubercular and anti-malarial agents
-
DOI 10.2174/138945007780058942
-
Oliveira JS, Vasconcelos IB, Moreira IS, Santos DS, Basso LA (2007) Enoyl reductases as targets for the development of anti-tubercular and anti-malarial agents. Curr Drug Targets 8:399-411. (Pubitemid 46388895)
-
(2007)
Current Drug Targets
, vol.8
, Issue.3
, pp. 399-411
-
-
Oliveira, J.S.1
Vasconcelos, I.B.2
Moreira, I.S.3
Santos, D.S.4
Basso, L.A.5
-
7
-
-
0028855972
-
Enoyl-acyl carrier protein reductase (fabI) plays a determinant role in completing cycles of fatty acid elongation in Escherichia coli
-
Heath RJ, Rock CO (1995) Enoyl-acyl carrier protein reductase (fabI) plays a determinant role in completing cycles of fatty acid elongation in Escherichia coli. J Biol Chem 270:26538-26542.
-
(1995)
J Biol Chem
, vol.270
, pp. 26538-26542
-
-
Heath, R.J.1
Rock, C.O.2
-
8
-
-
79952451528
-
Structural basis of triclosan resistance
-
Singh NJ, Shin D, Lee HM, Kim HT, Chang HJ, Cho JM, Kim KS, Ro S. (2011) Structural basis of triclosan resistance. J Struct Biol 174:173-179.
-
(2011)
J Struct Biol
, vol.174
, pp. 173-179
-
-
Singh, N.J.1
Shin, D.2
Lee, H.M.3
Kim, H.T.4
Chang, H.J.5
Cho, J.M.6
Kim, K.S.7
Ro, S.8
-
9
-
-
79959446397
-
Enoyl acyl carrier protein reductase inhibitors: A patent review (2006-2010)
-
Lu X, Huang K, You Q (2011) Enoyl acyl carrier protein reductase inhibitors: a patent review (2006-2010). Expert Opin Ther Pat 21:1007-1022.
-
(2011)
Expert Opin Ther Pat
, vol.21
, pp. 1007-1022
-
-
Lu, X.1
Huang, K.2
You, Q.3
-
10
-
-
0032721424
-
Molecular basis for triclosan activity involves a flipping loop in the active site
-
Qiu X, Janson CA, Court RI, Smyth MG, Payne DJ, Abdel-Meguid SS (1999) Molecular basis for triclosan activity involves a flipping loop in the active site. Prot Sci 8:2529-2532. (Pubitemid 29536423)
-
(1999)
Protein Science
, vol.8
, Issue.11
, pp. 2529-2532
-
-
Qiu, X.1
Janson, C.A.2
Court, R.I.3
Smyth, M.G.4
Payne, D.J.5
Abdel-Meguid, S.S.6
-
11
-
-
0032515066
-
Broad spectrum antimicrobial biocides target the FabI component of fatty acid synthesis
-
DOI 10.1074/jbc.273.46.30316
-
Heath RJ, Yu YT, Shapiro MA, Olson E, Rock CO (1998) Broad spectrum antimicrobial biocides target the FabI component of fatty acid synthesis. J Biol Chem 273:30316-30320. (Pubitemid 28545500)
-
(1998)
Journal of Biological Chemistry
, vol.273
, Issue.46
, pp. 30316-30320
-
-
Heath, R.J.1
Yu, Y.-T.2
Shapiro, M.A.3
Olson, E.4
Rock, C.O.5
-
13
-
-
0035861962
-
Kinetic determinants of the interaction of enoyl-ACP reductase from Plasmodium Falciparum with its substrates and inhibitors
-
DOI 10.1006/bbrc.2001.6061
-
Kapoor M, Dar MJ, Surolia A, Surolia N (2001) Kinetic determinants of the interaction of enoyl-ACP reductase from Plasmodium falciparum with its substrates and inhibitors. Biochem Biophys Res Commun 289:832-837. (Pubitemid 34060079)
-
(2001)
Biochemical and Biophysical Research Communications
, vol.289
, Issue.4
, pp. 832-837
-
-
Kapoor, M.1
Jamal, D.M.2
Surolia, A.3
Surolia, N.4
-
14
-
-
4344702214
-
Slow-tight-binding inhibition of enoyl-acyl carrier protein reductase from Plasmodium falciparum by triclosan
-
DOI 10.1042/BJ20031821
-
Kapoor M, Reddy CC, Krishnasastry MV, Surolia N, Surolia A (2004) Slow-tight-binding inhibition of enoyl-acyl carrier protein reductase from Plasmodium falciparum by triclosan. Biochem J 381:719-724. (Pubitemid 39120481)
-
(2004)
Biochemical Journal
, vol.381
, Issue.3
, pp. 719-724
-
-
Kapoor, M.1
Chandramouli, R.C.2
Krishnasastry, M.V.3
Surolia, N.4
Surolia, A.5
-
15
-
-
78951490232
-
Understanding drug-protein interactions in Escherichia coli FabI and various FabI inhibitor complexes
-
Lee HM, Singh NJ (2011) Understanding drug-protein interactions in Escherichia coli FabI and various FabI inhibitor complexes. B Korean Chem Soc 32:162-168.
-
(2011)
B Korean Chem Soc
, vol.32
, pp. 162-168
-
-
Lee, H.M.1
Singh, N.J.2
-
16
-
-
33746353678
-
Application of a receptor pruning methodology to the enoyl-ACP reductase from Escherichia coli (FabI)
-
DOI 10.1002/qsar.200530182
-
Pasqualoto KFM, Ferreira MMC (2006) Application of a receptor pruning methodology to the enoyl-ACP reductase from Escherichia coli (Fabl). Qsar Comb Sci 25:629-636. (Pubitemid 44113879)
-
(2006)
QSAR and Combinatorial Science
, vol.25
, Issue.7
, pp. 629-636
-
-
Pasqualoto, K.F.M.1
Ferreira, M.M.C.2
-
17
-
-
77649205632
-
Evaluation of enoyl-acyl carrier protein reductase inhibitors as Pseudomonas aeruginosa quorum-quenching reagents
-
Yang L, Liu Y, Sternberg C, Molin S (2010) Evaluation of enoyl-acyl carrier protein reductase inhibitors as Pseudomonas aeruginosa quorum-quenching reagents. Molecules 15:780-792.
-
(2010)
Molecules
, vol.15
, pp. 780-792
-
-
Yang, L.1
Liu, Y.2
Sternberg, C.3
Molin, S.4
-
18
-
-
79952791710
-
Molecular dynamics simulations of protein targets identified in Mycobacterium tuberculosis
-
de Azevedo WF, Jr. (2011) Molecular dynamics simulations of protein targets identified in Mycobacterium tuberculosis. Curr Med Chem 18:1353-1366.
-
(2011)
Curr Med Chem
, vol.18
, pp. 1353-1366
-
-
De Azevedo Jr., W.F.1
-
19
-
-
79955967681
-
Applying molecular dynamics simulations to identify rarely sampled ligand-bound conformational states of undecaprenyl pyrophosphate synthase, an antibacterial target
-
Sinko W, de Oliveira C, Williams S, Van Wynsberghe A, Durrant JD, Cao R, Oldfield E, McCammon JA. (2011) Applying molecular dynamics simulations to identify rarely sampled ligand-bound conformational states of undecaprenyl pyrophosphate synthase, an antibacterial target. Chem Biol Drug Des 77:412-420.
-
(2011)
Chem Biol Drug des
, vol.77
, pp. 412-420
-
-
Sinko, W.1
De Oliveira, C.2
Williams, S.3
Van Wynsberghe, A.4
Durrant, J.D.5
Cao, R.6
Oldfield, E.7
McCammon, J.A.8
-
20
-
-
79951979033
-
Effect of substrate binding loop mutations on the structure, kinetics, and inhibition of enoyl acyl carrier protein reductase from Plasmodium falciparum
-
Maity K, Banerjee T, Prabakaran N, Surolia N, Surolia A, Suguna K (2011) Effect of substrate binding loop mutations on the structure, kinetics, and inhibition of enoyl acyl carrier protein reductase from Plasmodium falciparum. IUBMB Life 63:30-41.
-
(2011)
IUBMB Life
, vol.63
, pp. 30-41
-
-
Maity, K.1
Banerjee, T.2
Prabakaran, N.3
Surolia, N.4
Surolia, A.5
Suguna, K.6
-
21
-
-
77953581267
-
X-ray crystallographic analysis of the complexes of enoyl acyl carrier protein reductase of Plasmodium falciparum with triclosan variants to elucidate the importance of different functional groups in enzyme inhibition
-
Maity K, Bhargav SP, Sankaran B, Surolia N, Surolia A, Suguna K (2010) X-ray crystallographic analysis of the complexes of enoyl acyl carrier protein reductase of Plasmodium falciparum with triclosan variants to elucidate the importance of different functional groups in enzyme inhibition. IUBMB Life 62:467-476.
-
(2010)
IUBMB Life
, vol.62
, pp. 467-476
-
-
Maity, K.1
Bhargav, S.P.2
Sankaran, B.3
Surolia, N.4
Surolia, A.5
Suguna, K.6
-
22
-
-
0000533108
-
Hydrogen-bond radii
-
Wallwork SC (1962) Hydrogen-bond radii. Acta Cryst 15:758-759.
-
(1962)
Acta Cryst
, vol.15
, pp. 758-759
-
-
Wallwork, S.C.1
-
23
-
-
0037063502
-
Estimates of the ab initio limit for pi-pi interactions: The benzene dimer
-
Sinnokrot MO, Valeev EF, Sherrill CD (2002) Estimates of the ab initio limit for pi-pi interactions: the benzene dimer. J Am Chem Soc 124:10887-10893.
-
(2002)
J Am Chem Soc
, vol.124
, pp. 10887-10893
-
-
Sinnokrot, M.O.1
Valeev, E.F.2
Sherrill, C.D.3
-
24
-
-
61449104961
-
Fragment-based identification of druggable 'hot spots' of proteins using Fourier domain correlation techniques
-
Brenke R, Kozakov D, Chuang GY, Beglov D, Hall D, Landon MR, Mattos C, Vajda S. (2009) Fragment-based identification of druggable 'hot spots' of proteins using Fourier domain correlation techniques. Bioinformatics 25:621-627.
-
(2009)
Bioinformatics
, vol.25
, pp. 621-627
-
-
Brenke, R.1
Kozakov, D.2
Chuang, G.Y.3
Beglov, D.4
Hall, D.5
Landon, M.R.6
Mattos, C.7
Vajda, S.8
-
25
-
-
1842607357
-
Discovery of a Novel Binding Trench in HIV Integrase
-
DOI 10.1021/jm0341913
-
Schames JR, Henchman RH, Siegel JS, Sotriffer CA, Ni H, McCammon JA (2004) Discovery of a novel binding trench in HIV integrase. J Med Chem 47:1879-1881. (Pubitemid 38453905)
-
(2004)
Journal of Medicinal Chemistry
, vol.47
, Issue.8
, pp. 1879-1881
-
-
Schames, J.R.1
Henchman, R.H.2
Siegel, J.S.3
Sotriffer, C.A.4
Ni, H.5
McCammon, J.A.6
-
26
-
-
50249114683
-
An improved relaxed complex scheme for receptor flexibility in computer-aided drug design
-
Amaro R, Baron R, McCammon J (2008) An improved relaxed complex scheme for receptor flexibility in computer-aided drug design. J Comp Mol Des 22:693-705.
-
(2008)
J Comp Mol Des
, vol.22
, pp. 693-705
-
-
Amaro, R.1
Baron, R.2
McCammon, J.3
-
27
-
-
0037157153
-
Computational drug design accommodating receptor flexibility: The relaxed complex scheme
-
DOI 10.1021/ja0260162
-
Lin JH, Perryman AL, Schames JR, McCammon JA (2002) Computational drug design accommodating receptor flexibility: the relaxed complex scheme. J Am Chem Soc 124:5632-5633. (Pubitemid 34533490)
-
(2002)
Journal of the American Chemical Society
, vol.124
, Issue.20
, pp. 5632-5633
-
-
Lin, J.-H.1
Perryman, A.L.2
Schames, J.R.3
McCammon, J.A.4
-
28
-
-
0037231646
-
The relaxed complex method: Accommodating receptor flexibility for drug design with an improved scoring scheme
-
DOI 10.1002/bip.10218
-
Lin JH, Perryman AL, Schames JR, McCammon JA (2003) The relaxed complex method: accommodating receptor flexibility for drug design with an improved scoring scheme. Biopolymers 68:47-62. (Pubitemid 36098307)
-
(2003)
Biopolymers
, vol.68
, Issue.1
, pp. 47-62
-
-
Lin, J.-H.1
Perryman, A.L.2
Schames, J.R.3
McCammon, J.A.4
-
29
-
-
32144432437
-
The SWISS-MODEL workspace: A web-based environment for protein structure homology modelling
-
DOI 10.1093/bioinformatics/bti770
-
Arnold K, Bordoli L, Kopp J, Schwede T (2006) The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling. Bioinformatics 22:195-201. (Pubitemid 43205406)
-
(2006)
Bioinformatics
, vol.22
, Issue.2
, pp. 195-201
-
-
Arnold, K.1
Bordoli, L.2
Kopp, J.3
Schwede, T.4
-
30
-
-
0037066782
-
Structural elucidation of the specificity of the antibacterial agent triclosan for malarial enoyl acyl carrier protein reductase
-
DOI 10.1074/jbc.M112000200
-
Perozzo R, Kuo M, Sidhu AS, Valiyaveettil JT, Bittman R, Jacobs WR, Jr, Fidock DA, Sacchettini JC. (2002) Structural elucidation of the specificity of the antibacterial agent triclosan for malarial enoyl acyl carrier protein reductase. J Biol Chem 277:13106-13114. (Pubitemid 34952681)
-
(2002)
Journal of Biological Chemistry
, vol.277
, Issue.15
, pp. 13106-13114
-
-
Perozzo, R.1
Kuo, M.2
Sidhu, A.B.S.3
Valiyaveettil, J.T.4
Bittman, R.5
Jacobs Jr., W.R.6
Fidock, D.A.7
Sacchettini, J.C.8
-
31
-
-
33947318051
-
Studies of Toxoplasma gondii and Plasmodium falciparum enoyl acyl carrier protein reductase and implications for the development of antiparasitic agents
-
DOI 10.1107/S0907444906053625, PII S0907444906053625
-
Muench SP, Prigge ST, McLeod R, Rafferty JB, Kirisits MJ, Roberts CW, Mui EJ, Rice DW. (2007) Studies of Toxoplasma gondii and Plasmodium falciparum enoyl acyl carrier protein reductase and implications for the development of antiparasitic agents. Acta Cryst D63:328-338. (Pubitemid 46438526)
-
(2007)
Acta Crystallographica Section D: Biological Crystallography
, vol.63
, Issue.3
, pp. 328-338
-
-
Muench, S.P.1
Prigge, S.T.2
McLeod, R.3
Rafferty, J.B.4
Kirisits, M.J.5
Roberts, C.W.6
Mui, E.J.7
Rice, D.W.8
-
32
-
-
4444221565
-
UCSF Chimera - A visualization system for exploratory research and analysis
-
Pettersen EF, Goddard TD, Huang CC, Couch GS, Greenblatt DM, Meng EC, Ferrin TE. (2004) UCSF Chimera - a visualization system for exploratory research and analysis. J Comp Chem 25:1605-1612.
-
(2004)
J Comp Chem
, vol.25
, pp. 1605-1612
-
-
Pettersen, E.F.1
Goddard, T.D.2
Huang, C.C.3
Couch, G.S.4
Greenblatt, D.M.5
Meng, E.C.6
Ferrin, T.E.7
-
33
-
-
23444454552
-
The Amber biomolecular simulation programs
-
DOI 10.1002/jcc.20290
-
Case DA, Cheatham TE, III, Darden T, Gohlke H, Luo R, Merz KM, Jr, Onufriev A, Simmerling C, Wang B, Woods RJ. (2005) The Amber biomolecular simulation programs. J Comp Chem 26:1668-1688. (Pubitemid 43076180)
-
(2005)
Journal of Computational Chemistry
, vol.26
, Issue.16
, pp. 1668-1688
-
-
Case, D.A.1
Cheatham III, T.E.2
Darden, T.3
Gohlke, H.4
Luo, R.5
Merz Jr., K.M.6
Onufriev, A.7
Simmerling, C.8
Wang, B.9
Woods, R.J.10
-
34
-
-
33748518255
-
Comparison of multiple amber force fields and development of improved protein backbone parameters
-
DOI 10.1002/prot.21123
-
Hornak V, Abel R, Okur A, Strockbine B, Roitberg A, Simmerling C (2006) Comparison of multiple Amber force fields and development of improved protein backbone parameters. Proteins 65:712-725. (Pubitemid 44583220)
-
(2006)
Proteins: Structure, Function and Genetics
, vol.65
, Issue.3
, pp. 712-725
-
-
Hornak, V.1
Abel, R.2
Okur, A.3
Strockbine, B.4
Roitberg, A.5
Simmerling, C.6
-
35
-
-
33646940952
-
Numerical integration of the cartesian equations of motion of a system with constraints: Molecular dynamics of n-alkanes
-
Ryckaert J-P, Ciccotti G, Berendsen HJC (1977) Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes. J Comp Phys 23:327-341.
-
(1977)
J Comp Phys
, vol.23
, pp. 327-341
-
-
Ryckaert, J.-P.1
Ciccotti, G.2
Berendsen, H.J.C.3
-
36
-
-
33750398103
-
Bio3d: An R package for the comparative analysis of protein structures
-
DOI 10.1093/bioinformatics/btl461
-
Grant BJ, Rodrigues AP, ElSawy KM, McCammon JA, Caves LS (2006) Bio3d: an R package for the comparative analysis of protein structures. Bioinformatics 22:2695-2696. (Pubitemid 44642612)
-
(2006)
Bioinformatics
, vol.22
, Issue.21
, pp. 2695-2696
-
-
Grant, B.J.1
Rodrigues, A.P.C.2
ElSawy, K.M.3
McCammon, J.A.4
Caves, L.S.D.5
-
37
-
-
0032546743
-
Are there non-trivial dynamic cross-correlations in proteins?
-
DOI 10.1006/jmbi.1998.1807
-
Abseher R, Nilges M (1998) Are there non-trivial dynamic cross-correlations in proteins? J Mol Biol 279:911-920. (Pubitemid 28284705)
-
(1998)
Journal of Molecular Biology
, vol.279
, Issue.4
, pp. 911-920
-
-
Abseher, R.1
Nilges, M.2
-
38
-
-
0001016372
-
A comparison of techniques for calculating protein essential dynamics
-
van Aalten DMF, DeGroot BL, Findlay JBC, Berendsen HJC, Amadei A (1997) A comparison of techniques for calculating protein essential dynamics. J Comp Chem 18:169-181. (Pubitemid 127598563)
-
(1997)
Journal of Computational Chemistry
, vol.18
, Issue.2
, pp. 169-181
-
-
Van Aalten, D.M.F.1
De Groot, B.L.2
Findlay, J.B.C.3
Berendsen, H.J.C.4
Amadei, A.5
-
40
-
-
30444448249
-
The GROMOS software for biomolecular simulation: GROMOS05
-
DOI 10.1002/jcc.20303
-
Christen M, Hunenberger PH, Bakowies D, Baron R, Burgi R, Geerke DP, Heinz TN, Kastenholz MA, Krautler V, Oostenbrink C, Peter C, Trzesniak D, van Gunsteren WF. (2005) The GROMOS software for biomolecular simulation: GROMOS05. J Comp Chem 26:1719-1751. (Pubitemid 43076183)
-
(2005)
Journal of Computational Chemistry
, vol.26
, Issue.16
, pp. 1719-1751
-
-
Christen, M.1
Hunenberger, P.H.2
Bakowies, D.3
Baron, R.4
Burgi, R.5
Geerke, D.P.6
Heinz, T.N.7
Kastenholz, M.A.8
Krautler, V.9
Oostenbrink, C.10
Peter, C.11
Trzesniak, D.12
Van Gunsteren, W.F.13
|