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Volumn 11, Issue 17, 2012, Pages 3199-3210

Cistrome plasticity and mechanisms of cistrome reprogramming

Author keywords

[No Author keywords available]

Indexed keywords

CELL DNA; CIS ACTING ELEMENT; EPIDERMAL GROWTH FACTOR RECEPTOR; ESTROGEN RECEPTOR ALPHA; IMMUNOGLOBULIN ENHANCER BINDING PROTEIN; PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR RUNX1;

EID: 84866279478     PISSN: 15384101     EISSN: 15514005     Source Type: Journal    
DOI: 10.4161/cc.21281     Document Type: Review
Times cited : (10)

References (130)
  • 1
    • 77950359470 scopus 로고    scopus 로고
    • Lineage-specific transcription factors and the evolution of gene regulatory networks
    • PMID:20081217
    • Nowick K, Stubbs L. Lineage-specific transcription factors and the evolution of gene regulatory networks. Brief Funct Genomics 2010; 9:65-78; PMID:20081217; http://dx.doi.org/10.1093/bfgp/elp056.
    • (2010) Brief Funct Genomics , vol.9 , pp. 65-78
    • Nowick, K.1    Stubbs, L.2
  • 2
    • 79952660821 scopus 로고    scopus 로고
    • Control of the embryonic stem cell state
    • PMID:21414485
    • Young RA. Control of the embryonic stem cell state. Cell 2011; 144:940-54; PMID:21414485; http://dx.doi.org/10.1016/j.cell.2011.01.032.
    • (2011) Cell , vol.144 , pp. 940-954
    • Young, R.A.1
  • 3
    • 80355146399 scopus 로고    scopus 로고
    • Transcriptional regulation of macrophage polarization: Enabling diversity with identity
    • PMID:22025054
    • Lawrence T, Natoli G. Transcriptional regulation of macrophage polarization: enabling diversity with identity. Nat Rev Immunol 2011; 11:750-61; PMID:22025054; http://dx.doi.org/10.1038/nri3088.
    • (2011) Nat Rev Immunol , vol.11 , pp. 750-761
    • Lawrence, T.1    Natoli, G.2
  • 4
    • 0034667792 scopus 로고    scopus 로고
    • Orchestrated response: A symphony of transcription factors for gene control
    • PMID:11040209
    • Lemon B, Tjian R. Orchestrated response: a symphony of transcription factors for gene control. Genes Dev 2000; 14:2551-69; PMID:11040209; http://dx.doi.org/10.1101/gad.831000.
    • (2000) Genes Dev , vol.14 , pp. 2551-2569
    • Lemon, B.1    Tjian, R.2
  • 5
    • 79960711532 scopus 로고    scopus 로고
    • Choreographing pluripotency and cell fate with transcription factors
    • Gonzales KA, Ng HH. Choreographing pluripotency and cell fate with transcription factors. Biochim Biophys Acta 2011; 1809:337-49.
    • (2011) Biochim Biophys Acta , vol.1809 , pp. 337-349
    • Gonzales, K.A.1    Ng, H.H.2
  • 6
    • 70350491412 scopus 로고    scopus 로고
    • How eukaryotic genes are transcribed
    • PMID:19514890
    • Venters BJ, Pugh BF. How eukaryotic genes are transcribed. Crit Rev Biochem Mol Biol 2009; 44:117-41; PMID:19514890.
    • (2009) Crit Rev Biochem Mol Biol , vol.44 , pp. 117-141
    • Venters, B.J.1    Pugh, B.F.2
  • 7
    • 82855170864 scopus 로고    scopus 로고
    • Old and new functions of proneural factors revealed by the genome-wide characterization of their transcriptional targets
    • PMID:22101262
    • Castro DS, Guillemot F. Old and new functions of proneural factors revealed by the genome-wide characterization of their transcriptional targets. Cell Cycle 2011; 10:4026-31; PMID:22101262; http://dx.doi.org/10.4161/cc.10.23. 18578.
    • (2011) Cell Cycle , vol.10 , pp. 4026-4031
    • Castro, D.S.1    Guillemot, F.2
  • 8
    • 62549128139 scopus 로고    scopus 로고
    • A census of human transcription factors: Function, expression and evolution
    • PMID:19274049
    • Vaquerizas JM, Kummerfeld SK, Teichmann SA, Luscombe NM. A census of human transcription factors: function, expression and evolution. Nat Rev Genet 2009; 10:252-63; PMID:19274049; http://dx.doi.org/10.1038/nrg2538.
    • (2009) Nat Rev Genet , vol.10 , pp. 252-263
    • Vaquerizas, J.M.1    Kummerfeld, S.K.2    Teichmann, S.A.3    Luscombe, N.M.4
  • 9
    • 67650480389 scopus 로고    scopus 로고
    • Cistromics of hormone-dependent cancer
    • PMID:19369485
    • Lupien M, Brown M. Cistromics of hormone-dependent cancer. Endocr Relat Cancer 2009; 16:381-9; PMID:19369485; http://dx.doi.org/10.1677/ERC-09-0038.
    • (2009) Endocr Relat Cancer , vol.16 , pp. 381-389
    • Lupien, M.1    Brown, M.2
  • 10
    • 55049107572 scopus 로고    scopus 로고
    • Unique ERalpha cistromes control cell type-specific gene regulation
    • PMID:18818283
    • Krum SA, Miranda-Carboni GA, Lupien M, Eeckhoute J, Carroll JS, Brown M. Unique ERalpha cistromes control cell type-specific gene regulation. Mol Endocrinol 2008; 22:2393-406; PMID:18818283; http://dx.doi.org/10.1210/me.2008- 0100.
    • (2008) Mol Endocrinol , vol.22 , pp. 2393-2406
    • Krum, S.A.1    Miranda-Carboni, G.A.2    Lupien, M.3    Eeckhoute, J.4    Carroll, J.S.5    Brown, M.6
  • 11
    • 77953808473 scopus 로고    scopus 로고
    • Next-generation genomics: An integrative approach
    • PMID:20531367
    • Hawkins RD, Hon GC, Ren B. Next-generation genomics: an integrative approach. Nat Rev Genet 2010; 11:476-86; PMID:20531367.
    • (2010) Nat Rev Genet , vol.11 , pp. 476-486
    • Hawkins, R.D.1    Hon, G.C.2    Ren, B.3
  • 12
    • 68949213578 scopus 로고    scopus 로고
    • Insights from genomic profiling of transcription factors
    • PMID:19668247
    • Farnham PJ. Insights from genomic profiling of transcription factors. Nat Rev Genet 2009; 10:605-16; PMID:19668247; http://dx.doi.org/10.1038/nrg2636.
    • (2009) Nat Rev Genet , vol.10 , pp. 605-616
    • Farnham, P.J.1
  • 13
    • 79953044960 scopus 로고    scopus 로고
    • Genome-wide transcription factor binding: Beyond direct target regulation
    • PMID:21295369
    • MacQuarrie KL, Fong AP, Morse RH, Tapscott SJ. Genome-wide transcription factor binding: beyond direct target regulation. Trends Genet 2011; 27:141-8; PMID:21295369; http://dx.doi.org/10.1016/j.tig.2011.01.001.
    • (2011) Trends Genet , vol.27 , pp. 141-148
    • MacQuarrie, K.L.1    Fong, A.P.2    Morse, R.H.3    Tapscott, S.J.4
  • 14
    • 79959360046 scopus 로고    scopus 로고
    • Application of ChIP-Seq and related techniques to the study of immune function
    • PMID:21703538
    • Northrup DL, Zhao K. Application of ChIP-Seq and related techniques to the study of immune function. Immunity 2011; 34:830-42; PMID:21703538; http://dx.doi.org/10.1016/j.immuni.2011.06.002.
    • (2011) Immunity , vol.34 , pp. 830-842
    • Northrup, D.L.1    Zhao, K.2
  • 15
    • 70349312354 scopus 로고    scopus 로고
    • ChIP-seq: Advantages and challenges of a maturing technology
    • PMID:19736561
    • Park PJ. ChIP-seq: advantages and challenges of a maturing technology. Nat Rev Genet 2009; 10:669-80; PMID:19736561; http://dx.doi.org/10.1038/nrg2641.
    • (2009) Nat Rev Genet , vol.10 , pp. 669-680
    • Park, P.J.1
  • 16
    • 33644638521 scopus 로고    scopus 로고
    • Estrogen receptors and human disease
    • PMID:16511588
    • Deroo BJ, Korach KS. Estrogen receptors and human disease. J Clin Invest 2006; 116:561-70; PMID:16511588; http://dx.doi.org/10.1172/JCI27987.
    • (2006) J Clin Invest , vol.116 , pp. 561-570
    • Deroo, B.J.1    Korach, K.S.2
  • 17
    • 34447523339 scopus 로고    scopus 로고
    • Estrogen receptors: How do they signal and what are their targets
    • PMID:17615392
    • Heldring N, Pike A, Andersson S, Matthews J, Cheng G, Hartman J, et al. Estrogen receptors: how do they signal and what are their targets. Physiol Rev 2007; 87:905-31; PMID:17615392; http://dx.doi.org/10.1152/physrev.00026.2006.
    • (2007) Physiol Rev , vol.87 , pp. 905-931
    • Heldring, N.1    Pike, A.2    Andersson, S.3    Matthews, J.4    Cheng, G.5    Hartman, J.6
  • 18
    • 57349113761 scopus 로고    scopus 로고
    • Regulation of ERBB2 by oestrogen receptor-PAX2 determines response to tamoxifen
    • PMID:19005469
    • Hurtado A, Holmes KA, Geistlinger TR, Hutcheson IR, Nicholson RI, Brown M, et al. Regulation of ERBB2 by oestrogen receptor-PAX2 determines response to tamoxifen. Nature 2008; 456:663-6; PMID:19005469; http://dx.doi.org/10.1038/ nature07483.
    • (2008) Nature , vol.456 , pp. 663-666
    • Hurtado, A.1    Holmes, K.A.2    Geistlinger, T.R.3    Hutcheson, I.R.4    Nicholson, R.I.5    Brown, M.6
  • 19
    • 66549085342 scopus 로고    scopus 로고
    • ChIP-Seq of ERalpha and RNA polymerase II defines genes differentially responding to ligands
    • PMID:19339991
    • Welboren WJ, van Driel MA, Janssen-Megens EM, van Heeringen SJ, Sweep FC, Span PN, et al. ChIP-Seq of ERalpha and RNA polymerase II defines genes differentially responding to ligands. EMBO J 2009; 28:1418-28; PMID:19339991; http://dx.doi.org/10.1038/emboj.2009.88.
    • (2009) EMBO J , vol.28 , pp. 1418-1428
    • Welboren, W.J.1    Van Driel, M.A.2    Janssen-Megens, E.M.3    Van Heeringen, S.J.4    Sweep, F.C.5    Span, P.N.6
  • 20
    • 77951900245 scopus 로고    scopus 로고
    • Genomic analyses of hormone signaling and gene regulation
    • PMID:20148673
    • Cheung E, Kraus WL. Genomic analyses of hormone signaling and gene regulation. Annu Rev Physiol 2010; 72:191-218; PMID:20148673; http://dx.doi.org/10.1146/annurev-physiol-021909-135840.
    • (2010) Annu Rev Physiol , vol.72 , pp. 191-218
    • Cheung, E.1    Kraus, W.L.2
  • 21
    • 34347345081 scopus 로고    scopus 로고
    • Whole-genome cartography of estrogen receptor alpha binding sites
    • PMID:17542648
    • Lin CY, Vega VB, Thomsen JS, Zhang T, Kong SL, Xie M, et al. Whole-genome cartography of estrogen receptor alpha binding sites. PLoS Genet 2007; 3:e87; PMID:17542648; http://dx.doi.org/10.1371/journal.pgen.0030087.
    • (2007) PLoS Genet , vol.3
    • Lin, C.Y.1    Vega, V.B.2    Thomsen, J.S.3    Zhang, T.4    Kong, S.L.5    Xie, M.6
  • 22
    • 40849085514 scopus 로고    scopus 로고
    • FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcription
    • PMID:18358809
    • Lupien M, Eeckhoute J, Meyer CA, Wang Q, Zhang Y, Li W, et al. FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcription. Cell 2008; 132:958-70; PMID:18358809; http://dx.doi.org/10.1016/ j.cell.2008.01.018.
    • (2008) Cell , vol.132 , pp. 958-970
    • Lupien, M.1    Eeckhoute, J.2    Meyer, C.A.3    Wang, Q.4    Zhang, Y.5    Li, W.6
  • 23
    • 78651250284 scopus 로고    scopus 로고
    • FOXA1 is a key determinant of estrogen receptor function and endocrine response
    • PMID:21151129
    • Hurtado A, Holmes KA, Ross-Innes CS, Schmidt D, Carroll JS. FOXA1 is a key determinant of estrogen receptor function and endocrine response. Nat Genet 2011; 43:27-33; PMID:21151129; http://dx.doi.org/10.1038/ng.730.
    • (2011) Nat Genet , vol.43 , pp. 27-33
    • Hurtado, A.1    Holmes, K.A.2    Ross-Innes, C.S.3    Schmidt, D.4    Carroll, J.S.5
  • 24
    • 79955836460 scopus 로고    scopus 로고
    • A rapid, extensive, and transient transcriptional response to estrogen signaling in breast cancer cells
    • PMID:21549415
    • Hah N, Danko CG, Core L, Waterfall JJ, Siepel A, Lis JT, et al. A rapid, extensive, and transient transcriptional response to estrogen signaling in breast cancer cells. Cell 2011; 145:622-34; PMID:21549415; http://dx.doi.org/10. 1016/j.cell.2011.03.042.
    • (2011) Cell , vol.145 , pp. 622-634
    • Hah, N.1    Danko, C.G.2    Core, L.3    Waterfall, J.J.4    Siepel, A.5    Lis, J.T.6
  • 25
    • 72549085551 scopus 로고    scopus 로고
    • Genomic actions of estrogen receptor alpha: What are the targets and how are they regulated?
    • PMID:19628648
    • Welboren WJ, Sweep FC, Span PN, Stunnenberg HG. Genomic actions of estrogen receptor alpha: what are the targets and how are they regulated? Endocr Relat Cancer 2009; 16:1073-89; PMID:19628648; http://dx.doi.org/10.1677/ERC-09- 0086.
    • (2009) Endocr Relat Cancer , vol.16 , pp. 1073-1089
    • Welboren, W.J.1    Sweep, F.C.2    Span, P.N.3    Stunnenberg, H.G.4
  • 26
    • 77957673898 scopus 로고    scopus 로고
    • Growth factor stimulation induces a distinct ER(alpha) cistrome underlying breast cancer endocrine resistance
    • PMID:20889718
    • Lupien M, Meyer CA, Bailey ST, Eeckhoute J, Cook J, Westerling T, et al. Growth factor stimulation induces a distinct ER(alpha) cistrome underlying breast cancer endocrine resistance. Genes Dev 2010; 24:2219-27; PMID:20889718; http://dx.doi.org/10.1101/gad.1944810.
    • (2010) Genes Dev , vol.24 , pp. 2219-2227
    • Lupien, M.1    Meyer, C.A.2    Bailey, S.T.3    Eeckhoute, J.4    Cook, J.5    Westerling, T.6
  • 27
    • 57349173558 scopus 로고    scopus 로고
    • AKT alters genome-wide estrogen receptor alpha binding and impacts estrogen signaling in breast cancer
    • PMID:18838536
    • Bhat-Nakshatri P, Wang G, Appaiah H, Luktuke N, Carroll JS, Geistlinger TR, et al. AKT alters genome-wide estrogen receptor alpha binding and impacts estrogen signaling in breast cancer. Mol Cell Biol 2008; 28:7487-503; PMID:18838536; http://dx.doi.org/10.1128/MCB.00799-08.
    • (2008) Mol Cell Biol , vol.28 , pp. 7487-7503
    • Bhat-Nakshatri, P.1    Wang, G.2    Appaiah, H.3    Luktuke, N.4    Carroll, J.S.5    Geistlinger, T.R.6
  • 28
    • 77955629953 scopus 로고    scopus 로고
    • Genome-wide analysis of estrogen receptor alpha DNA binding and tethering mechanisms identifies Runx1 as a novel tethering factor in receptor-mediated transcriptional activation
    • PMID:20547749
    • Stender JD, Kim K, Charn TH, Komm B, Chang KC, Kraus WL, et al. Genome-wide analysis of estrogen receptor alpha DNA binding and tethering mechanisms identifies Runx1 as a novel tethering factor in receptor-mediated transcriptional activation. Mol Cell Biol 2010; 30:3943-55; PMID:20547749; http://dx.doi.org/10.1128/MCB.00118-10.
    • (2010) Mol Cell Biol , vol.30 , pp. 3943-3955
    • Stender, J.D.1    Kim, K.2    Charn, T.H.3    Komm, B.4    Chang, K.C.5    Kraus, W.L.6
  • 29
    • 84856008906 scopus 로고    scopus 로고
    • Differential oestrogen receptor binding is associated with clinical outcome in breast cancer
    • PMID:22217937
    • Ross-Innes CS, Stark R, Teschendorff AE, Holmes KA, Ali HR, Dunning MJ, et al. Differential oestrogen receptor binding is associated with clinical outcome in breast cancer. Nature 2012; 481:389-93; PMID:22217937.
    • (2012) Nature , vol.481 , pp. 389-393
    • Ross-Innes, C.S.1    Stark, R.2    Teschendorff, A.E.3    Holmes, K.A.4    Ali, H.R.5    Dunning, M.J.6
  • 31
    • 77957348625 scopus 로고    scopus 로고
    • Combinatorial transcriptional control in blood stem/progenitor cells: Genome-wide analysis of ten major transcriptional regulators
    • PMID:20887958
    • Wilson NK, Foster SD, Wang X, Knezevic K, Schütte J, Kaimakis P, et al. Combinatorial transcriptional control in blood stem/progenitor cells: genome-wide analysis of ten major transcriptional regulators. Cell Stem Cell 2010; 7:532-44; PMID:20887958; http://dx.doi.org/10.1016/j.stem.2010.07.016.
    • (2010) Cell Stem Cell , vol.7 , pp. 532-544
    • Wilson, N.K.1    Foster, S.D.2    Wang, X.3    Knezevic, K.4    Schütte, J.5    Kaimakis, P.6
  • 32
    • 79953297708 scopus 로고    scopus 로고
    • Genome-wide analysis of transcription factor E2F1 mutant proteins reveals that N- And C-terminal protein interaction domains do not participate in targeting E2F1 to the human genome
    • PMID:21310950
    • Cao AR, Rabinovich R, Xu M, Xu X, Jin VX, Farnham PJ. Genome-wide analysis of transcription factor E2F1 mutant proteins reveals that N- and C-terminal protein interaction domains do not participate in targeting E2F1 to the human genome. J Biol Chem 2011; 286:11985-96; PMID:21310950; http://dx.doi.org/10.1074/jbc.M110.217158.
    • (2011) J Biol Chem , vol.286 , pp. 11985-11996
    • Cao, A.R.1    Rabinovich, R.2    Xu, M.3    Xu, X.4    Jin, V.X.5    Farnham, P.J.6
  • 33
    • 74249118523 scopus 로고    scopus 로고
    • DNA specificity determinants associate with distinct transcription factor functions
    • PMID:20019798
    • Hollenhorst PC, Chandler KJ, Poulsen RL, Johnson WE, Speck NA, Graves BJ. DNA specificity determinants associate with distinct transcription factor functions. PLoS Genet 2009; 5:e1000778; PMID:20019798; http://dx.doi.org/10. 1371/journal.pgen.1000778.
    • (2009) PLoS Genet , vol.5
    • Hollenhorst, P.C.1    Chandler, K.J.2    Poulsen, R.L.3    Johnson, W.E.4    Speck, N.A.5    Graves, B.J.6
  • 34
    • 67649982744 scopus 로고    scopus 로고
    • Diversity and complexity in DNA recognition by transcription factors
    • PMID:19443739
    • Badis G, Berger MF, Philippakis AA, Talukder S, Gehrke AR, Jaeger SA, et al. Diversity and complexity in DNA recognition by transcription factors. Science 2009; 324:1720-3; PMID:19443739; http://dx.doi.org/10.1126/science. 1162327.
    • (2009) Science , vol.324 , pp. 1720-1723
    • Badis, G.1    Berger, M.F.2    Philippakis, A.A.3    Talukder, S.4    Gehrke, A.R.5    Jaeger, S.A.6
  • 35
    • 77951118936 scopus 로고    scopus 로고
    • Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis
    • PMID:20393566
    • Gupta RA, Shah N, Wang KC, Kim J, Horlings HM, Wong DJ, et al. Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis. Nature 2010; 464:1071-6; PMID:20393566; http://dx.doi.org/10.1038/nature08975.
    • (2010) Nature , vol.464 , pp. 1071-1076
    • Gupta, R.A.1    Shah, N.2    Wang, K.C.3    Kim, J.4    Horlings, H.M.5    Wong, D.J.6
  • 36
    • 33847057887 scopus 로고    scopus 로고
    • Relationships between p63 binding, DNA sequence, transcription activity, and biological function in human cells
    • PMID:17188034
    • Yang A, Zhu Z, Kapranov P, McKeon F, Church GM, Gingeras TR, et al. Relationships between p63 binding, DNA sequence, transcription activity, and biological function in human cells. Mol Cell 2006; 24:593-602; PMID:17188034; http://dx.doi.org/10.1016/j.molcel.2006.10.018.
    • (2006) Mol Cell , vol.24 , pp. 593-602
    • Yang, A.1    Zhu, Z.2    Kapranov, P.3    McKeon, F.4    Church, G.M.5    Gingeras, T.R.6
  • 37
    • 55549103719 scopus 로고    scopus 로고
    • E2F in vivo binding specificity: Comparison of consensus versus nonconsensus binding sites
    • PMID:18836037
    • Rabinovich A, Jin VX, Rabinovich R, Xu X, Farnham PJ. E2F in vivo binding specificity: comparison of consensus versus nonconsensus binding sites. Genome Res 2008; 18:1763-77; PMID:18836037; http://dx.doi.org/10.1101/gr.080622.108.
    • (2008) Genome Res , vol.18 , pp. 1763-1777
    • Rabinovich, A.1    Jin, V.X.2    Rabinovich, R.3    Xu, X.4    Farnham, P.J.5
  • 38
    • 33750442923 scopus 로고    scopus 로고
    • Genome-wide analysis of estrogen receptor binding sites
    • PMID:17013392
    • Carroll JS, Meyer CA, Song J, Li W, Geistlinger TR, Eeckhoute J, et al. Genome-wide analysis of estrogen receptor binding sites. Nat Genet 2006; 38:1289-97; PMID:17013392; http://dx.doi.org/10.1038/ng1901.
    • (2006) Nat Genet , vol.38 , pp. 1289-1297
    • Carroll, J.S.1    Meyer, C.A.2    Song, J.3    Li, W.4    Geistlinger, T.R.5    Eeckhoute, J.6
  • 39
    • 80052398200 scopus 로고    scopus 로고
    • Cellular reprogramming by the conjoint action of ERα, FOXA1, and GATA3 to a ligand-inducible growth state
    • PMID:21878914
    • Kong SL, Li G, Loh SL, Sung WK, Liu ET. Cellular reprogramming by the conjoint action of ERα, FOXA1, and GATA3 to a ligand-inducible growth state. Mol Syst Biol 2011; 7:526; PMID:21878914; http://dx.doi.org/10.1038/msb. 2011.59.
    • (2011) Mol Syst Biol , vol.7 , pp. 526
    • Kong, S.L.1    Li, G.2    Loh, S.L.3    Sung, W.K.4    Liu, E.T.5
  • 40
    • 79960072084 scopus 로고    scopus 로고
    • AP-2γ regulates oestrogen receptor-mediated long-range chromatin interaction and gene transcription
    • PMID:21572391
    • Tan SK, Lin ZH, Chang CW, Varang V, Chng KR, Pan YF, et al. AP-2γ regulates oestrogen receptor-mediated long-range chromatin interaction and gene transcription. EMBO J 2011; 30:2569-81; PMID:21572391; http://dx.doi.org/10. 1038/emboj.2011.151.
    • (2011) EMBO J , vol.30 , pp. 2569-2581
    • Tan, S.K.1    Lin, Z.H.2    Chang, C.W.3    Varang, V.4    Chng, K.R.5    Pan, Y.F.6
  • 41
    • 79955027617 scopus 로고    scopus 로고
    • Co-occupancy by multiple cardiac transcription factors identifies transcriptional enhancers active in heart
    • PMID:21415370
    • He A, Kong SW, Ma Q, Pu WT. Co-occupancy by multiple cardiac transcription factors identifies transcriptional enhancers active in heart. Proc Natl Acad Sci USA 2011; 108:5632-7; PMID:21415370; http://dx.doi.org/10.1073/ pnas.1016959108.
    • (2011) Proc Natl Acad Sci USA , vol.108 , pp. 5632-5637
    • He, A.1    Kong, S.W.2    Ma, Q.3    Pu, W.T.4
  • 42
    • 77952567987 scopus 로고    scopus 로고
    • Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities
    • PMID:20513432
    • Heinz S, Benner C, Spann N, Bertolino E, Lin YC, Laslo P, et al. Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol Cell 2010; 38:576-89; PMID:20513432; http://dx.doi.org/10.1016/j.molcel.2010.05.004.
    • (2010) Mol Cell , vol.38 , pp. 576-589
    • Heinz, S.1    Benner, C.2    Spann, N.3    Bertolino, E.4    Lin, Y.C.5    Laslo, P.6
  • 43
    • 55749095056 scopus 로고    scopus 로고
    • PPARgamma and C/EBP factors orchestrate adipocyte biology via adjacent binding on a genome-wide scale
    • PMID:18981473
    • Lefterova MI, Zhang Y, Steger DJ, Schupp M, Schug J, Cristancho A, et al. PPARgamma and C/EBP factors orchestrate adipocyte biology via adjacent binding on a genome-wide scale. Genes Dev 2008; 22:2941-52; PMID:18981473; http://dx.doi.org/10.1101/gad.1709008.
    • (2008) Genes Dev , vol.22 , pp. 2941-2952
    • Lefterova, M.I.1    Zhang, Y.2    Steger, D.J.3    Schupp, M.4    Schug, J.5    Cristancho, A.6
  • 44
    • 77953763449 scopus 로고    scopus 로고
    • A global network of transcription factors, involving E2A, EBF1 and Foxo1, that orchestrates B cell fate
    • PMID:20543837
    • Lin YC, Jhunjhunwala S, Benner C, Heinz S, Welinder E, Mansson R, et al. A global network of transcription factors, involving E2A, EBF1 and Foxo1, that orchestrates B cell fate. Nat Immunol 2010; 11:635-43; PMID:20543837; http://dx.doi.org/10.1038/ni.1891.
    • (2010) Nat Immunol , vol.11 , pp. 635-643
    • Lin, Y.C.1    Jhunjhunwala, S.2    Benner, C.3    Heinz, S.4    Welinder, E.5    Mansson, R.6
  • 45
    • 78751625306 scopus 로고    scopus 로고
    • Nuclear adaptor Ldb1 regulates a transcriptional program essential for the maintenance of hematopoietic stem cells
    • PMID:21186366
    • Li L, Jothi R, Cui K, Lee JY, Cohen T, Gorivodsky M, et al. Nuclear adaptor Ldb1 regulates a transcriptional program essential for the maintenance of hematopoietic stem cells. Nat Immunol 2011; 12:129-36; PMID:21186366; http://dx.doi.org/10.1038/ni.1978.
    • (2011) Nat Immunol , vol.12 , pp. 129-136
    • Li, L.1    Jothi, R.2    Cui, K.3    Lee, J.Y.4    Cohen, T.5    Gorivodsky, M.6
  • 46
    • 55749101777 scopus 로고    scopus 로고
    • Genome-wide profiling of PPARgamma:RXR and RNA polymerase II occupancy reveals temporal activation of distinct metabolic pathways and changes in RXR dimer composition during adipogenesis
    • PMID:18981474
    • Nielsen R, Pedersen TA, Hagenbeek D, Moulos P, Siersbaek R, Megens E, et al. Genome-wide profiling of PPARgamma:RXR and RNA polymerase II occupancy reveals temporal activation of distinct metabolic pathways and changes in RXR dimer composition during adipogenesis. Genes Dev 2008; 22:2953-67; PMID:18981474; http://dx.doi.org/10.1101/gad.501108.
    • (2008) Genes Dev , vol.22 , pp. 2953-2967
    • Nielsen, R.1    Pedersen, T.A.2    Hagenbeek, D.3    Moulos, P.4    Siersbaek, R.5    Megens, E.6
  • 47
    • 76149089221 scopus 로고    scopus 로고
    • The genome-wide dynamics of the binding of Ldb1 complexes during erythroid differentiation
    • PMID:20123907
    • Soler E, Andrieu-Soler C, de Boer E, Bryne JC, Thongjuea S, Stadhouders R, et al. The genome-wide dynamics of the binding of Ldb1 complexes during erythroid differentiation. Genes Dev 2010; 24:277-89; PMID:20123907; http://dx.doi.org/10.1101/gad.551810.
    • (2010) Genes Dev , vol.24 , pp. 277-289
    • Soler, E.1    Andrieu-Soler, C.2    De Boer, E.3    Bryne, J.C.4    Thongjuea, S.5    Stadhouders, R.6
  • 48
    • 79955883317 scopus 로고    scopus 로고
    • Genome-wide analysis of simultaneous GATA1/2, RUNX1, FLI1, and SCL binding in megakaryocytes identifies hematopoietic regulators
    • PMID:21571218
    • Tijssen MR, Cvejic A, Joshi A, Hannah RL, Ferreira R, Forrai A, et al. Genome-wide analysis of simultaneous GATA1/2, RUNX1, FLI1, and SCL binding in megakaryocytes identifies hematopoietic regulators. Dev Cell 2011; 20:597-609; PMID:21571218; http://dx.doi.org/10.1016/j.devcel.2011.04.008.
    • (2011) Dev Cell , vol.20 , pp. 597-609
    • Tijssen, M.R.1    Cvejic, A.2    Joshi, A.3    Hannah, R.L.4    Ferreira, R.5    Forrai, A.6
  • 49
    • 78149485097 scopus 로고    scopus 로고
    • Differentiation-specific histone modifications reveal dynamic chromatin interactions and partners for the intestinal transcription factor CDX2
    • PMID:21074721
    • Verzi MP, Shin H, He HH, Sulahian R, Meyer CA, Montgomery RK, et al. Differentiation-specific histone modifications reveal dynamic chromatin interactions and partners for the intestinal transcription factor CDX2. Dev Cell 2010; 19:713-26; PMID:21074721; http://dx.doi.org/10.1016/j.devcel.2010.10.006.
    • (2010) Dev Cell , vol.19 , pp. 713-726
    • Verzi, M.P.1    Shin, H.2    He, H.H.3    Sulahian, R.4    Meyer, C.A.5    Montgomery, R.K.6
  • 50
    • 79959198166 scopus 로고    scopus 로고
    • Reprogramming transcription by distinct classes of enhancers functionally defined by eRNA
    • PMID:21572438
    • Wang D, Garcia-Bassets I, Benner C, Li W, Su X, Zhou Y, et al. Reprogramming transcription by distinct classes of enhancers functionally defined by eRNA. Nature 2011; 474:390-4; PMID:21572438; http://dx.doi.org/10. 1038/nature10006.
    • (2011) Nature , vol.474 , pp. 390-394
    • Wang, D.1    Garcia-Bassets, I.2    Benner, C.3    Li, W.4    Su, X.5    Zhou, Y.6
  • 51
    • 80155137594 scopus 로고    scopus 로고
    • Master transcription factors determine cell-type-specific responses to TGF-β signaling
    • PMID:22036565
    • Mullen AC, Orlando DA, Newman JJ, Lovén J, Kumar RM, Bilodeau S, et al. Master transcription factors determine cell-type-specific responses to TGF-β signaling. Cell 2011; 147:565-76; PMID:22036565; http://dx.doi.org/ 10.1016/j.cell.2011.08.050.
    • (2011) Cell , vol.147 , pp. 565-576
    • Mullen, A.C.1    Orlando, D.A.2    Newman, J.J.3    Lovén, J.4    Kumar, R.M.5    Bilodeau, S.6
  • 52
    • 78650210727 scopus 로고    scopus 로고
    • Bcl-6 and NF-kappaB cistromes mediate opposing regulation of the innate immune response
    • PMID:21106671
    • Barish GD, Yu RT, Karunasiri M, Ocampo CB, Dixon J, Benner C, et al. Bcl-6 and NF-kappaB cistromes mediate opposing regulation of the innate immune response. Genes Dev 2010; 24:2760-5; PMID:21106671; http://dx.doi.org/10.1101/ gad.1998010.
    • (2010) Genes Dev , vol.24 , pp. 2760-2765
    • Barish, G.D.1    Yu, R.T.2    Karunasiri, M.3    Ocampo, C.B.4    Dixon, J.5    Benner, C.6
  • 53
    • 67549104319 scopus 로고    scopus 로고
    • Genomic antagonism between retinoic acid and estrogen signaling in breast cancer
    • PMID:19563758
    • Hua S, Kittler R, White KP. Genomic antagonism between retinoic acid and estrogen signaling in breast cancer. Cell 2009; 137:1259-71; PMID:19563758; http://dx.doi.org/10.1016/j.cell.2009.04.043.
    • (2009) Cell , vol.137 , pp. 1259-1271
    • Hua, S.1    Kittler, R.2    White, K.P.3
  • 54
    • 33750352462 scopus 로고    scopus 로고
    • Transcriptional regulatory elements in the human genome
    • PMID:16719718
    • Maston GA, Evans SK, Green MR. Transcriptional regulatory elements in the human genome. Annu Rev Genomics Hum Genet 2006; 7:29-59; PMID:16719718; http://dx.doi.org/10.1146/annurev.genom.7.080505.115623.
    • (2006) Annu Rev Genomics Hum Genet , vol.7 , pp. 29-59
    • Maston, G.A.1    Evans, S.K.2    Green, M.R.3
  • 55
    • 75949115944 scopus 로고    scopus 로고
    • Noncooperative interactions between transcription factors and clustered DNA binding sites enable graded transcriptional responses to environmental inputs
    • PMID:20159560
    • Giorgetti L, Siggers T, Tiana G, Caprara G, Notarbartolo S, Corona T, et al. Noncooperative interactions between transcription factors and clustered DNA binding sites enable graded transcriptional responses to environmental inputs. Mol Cell 2010; 37:418-28; PMID:20159560; http://dx.doi.org/10.1016/j.molcel. 2010.01.016.
    • (2010) Mol Cell , vol.37 , pp. 418-428
    • Giorgetti, L.1    Siggers, T.2    Tiana, G.3    Caprara, G.4    Notarbartolo, S.5    Corona, T.6
  • 56
    • 80051537445 scopus 로고    scopus 로고
    • Chromatin and transcriptional signatures for Nodal signaling during endoderm formation in hESCs
    • PMID:21741376
    • Kim SW, Yoon SJ, Chuong E, Oyolu C, Wills AE, Gupta R, et al. Chromatin and transcriptional signatures for Nodal signaling during endoderm formation in hESCs. Dev Biol 2011; 357:492-504; PMID:21741376; http://dx.doi.org/10.1016/j. ydbio.2011.06.009.
    • (2011) Dev Biol , vol.357 , pp. 492-504
    • Kim, S.W.1    Yoon, S.J.2    Chuong, E.3    Oyolu, C.4    Wills, A.E.5    Gupta, R.6
  • 57
    • 70449132583 scopus 로고    scopus 로고
    • Combinatorial binding predicts spatio-temporal cis-regulatory activity
    • PMID:19890324
    • Zinzen RP, Girardot C, Gagneur J, Braun M, Furlong EE. Combinatorial binding predicts spatio-temporal cis-regulatory activity. Nature 2009; 462:65-70; PMID:19890324; http://dx.doi.org/10.1038/nature08531.
    • (2009) Nature , vol.462 , pp. 65-70
    • Zinzen, R.P.1    Girardot, C.2    Gagneur, J.3    Braun, M.4    Furlong, E.E.5
  • 58
    • 79961125554 scopus 로고    scopus 로고
    • Forkhead factors regulate epithelial plasticity: Impact on cancer progression
    • PMID:21685726
    • Feuerborn A, Küffer S, Gröne HJ. Forkhead factors regulate epithelial plasticity: impact on cancer progression. Cell Cycle 2011; 10:2454-60; PMID:21685726; http://dx.doi.org/10.4161/cc.10.15.16306.
    • (2011) Cell Cycle , vol.10 , pp. 2454-2460
    • Feuerborn, A.1    Küffer, S.2    Gröne, H.J.3
  • 59
    • 80052000538 scopus 로고    scopus 로고
    • Dynamic exchange at regulatory elements during chromatin remodeling underlies assisted loading mechanism
    • PMID:21835447
    • Voss TC, Schiltz RL, Sung MH, Yen PM, Stamatoyannopoulos JA, Biddie SC, et al. Dynamic exchange at regulatory elements during chromatin remodeling underlies assisted loading mechanism. Cell 2011; 146:544-54; PMID:21835447; http://dx.doi.org/10.1016/j.cell.2011.07.006.
    • (2011) Cell , vol.146 , pp. 544-554
    • Voss, T.C.1    Schiltz, R.L.2    Sung, M.H.3    Yen, P.M.4    Stamatoyannopoulos, J.A.5    Biddie, S.C.6
  • 60
    • 80455144479 scopus 로고    scopus 로고
    • Pioneer transcription factors: Establishing competence for gene expression
    • PMID:22056668
    • Zaret KS, Carroll JS. Pioneer transcription factors: establishing competence for gene expression. Genes Dev 2011; 25:2227-41; PMID:22056668; http://dx.doi.org/10.1101/gad.176826.111.
    • (2011) Genes Dev , vol.25 , pp. 2227-2241
    • Zaret, K.S.1    Carroll, J.S.2
  • 61
    • 68549133583 scopus 로고    scopus 로고
    • Mapping key features of transcriptional regulatory circuitry in embryonic stem cells
    • PMID:19022761
    • Cole MF, Young RA. Mapping key features of transcriptional regulatory circuitry in embryonic stem cells. Cold Spring Harb Symp Quant Biol 2008; 73:183-93; PMID:19022761; http://dx.doi.org/10.1101/sqb.2008.73.027.
    • (2008) Cold Spring Harb Symp Quant Biol , vol.73 , pp. 183-193
    • Cole, M.F.1    Young, R.A.2
  • 62
    • 77649299348 scopus 로고    scopus 로고
    • An atlas of combinatorial transcriptional regulation in mouse and man
    • PMID:20211142
    • Ravasi T, Suzuki H, Cannistraci CV, Katayama S, Bajic VB, Tan K, et al. An atlas of combinatorial transcriptional regulation in mouse and man. Cell 2010; 140:744-52; PMID:20211142; http://dx.doi.org/10.1016/j.cell.2010.01.044.
    • (2010) Cell , vol.140 , pp. 744-752
    • Ravasi, T.1    Suzuki, H.2    Cannistraci, C.V.3    Katayama, S.4    Bajic, V.B.5    Tan, K.6
  • 64
    • 76149132685 scopus 로고    scopus 로고
    • Generic binding sites, generic DNA-binding domains: Where does specific promoter recognition come from?
    • PMID:19762556
    • Georges AB, Benayoun BA, Caburet S, Veitia RA. Generic binding sites, generic DNA-binding domains: where does specific promoter recognition come from? FASEB J 2010; 24:346-56; PMID:19762556; http://dx.doi.org/10.1096/fj.09-142117.
    • (2010) FASEB J , vol.24 , pp. 346-356
    • Georges, A.B.1    Benayoun, B.A.2    Caburet, S.3    Veitia, R.A.4
  • 65
    • 0142026180 scopus 로고    scopus 로고
    • Context-dependent transcription: All politics is local
    • PMID:12957376
    • Alvarez M, Rhodes SJ, Bidwell JP. Context-dependent transcription: all politics is local. Gene 2003; 313:43-57; PMID:12957376; http://dx.doi.org/10. 1016/S0378-1119(03)00627-9.
    • (2003) Gene , vol.313 , pp. 43-57
    • Alvarez, M.1    Rhodes, S.J.2    Bidwell, J.P.3
  • 66
    • 79958033757 scopus 로고    scopus 로고
    • Genome-wide approaches reveal functional interleukin-4-inducible STAT6 binding to the vascular cell adhesion molecule 1 promoter
    • PMID:21464207
    • Tozawa H, Kanki Y, Suehiro J, Tsutsumi S, Kohro T, Wada Y, et al. Genome-wide approaches reveal functional interleukin-4-inducible STAT6 binding to the vascular cell adhesion molecule 1 promoter. Mol Cell Biol 2011; 31:2196-209; PMID:21464207; http://dx.doi.org/10.1128/MCB.01430-10.
    • (2011) Mol Cell Biol , vol.31 , pp. 2196-2209
    • Tozawa, H.1    Kanki, Y.2    Suehiro, J.3    Tsutsumi, S.4    Kohro, T.5    Wada, Y.6
  • 67
    • 79960050587 scopus 로고    scopus 로고
    • Targeting androgen receptor in estrogen receptor-negative breast cancer
    • PMID:21741601
    • Ni M, Chen Y, Lim E, Wimberly H, Bailey ST, Imai Y, et al. Targeting androgen receptor in estrogen receptor-negative breast cancer. Cancer Cell 2011; 20:119-31; PMID:21741601; http://dx.doi.org/10.1016/j.ccr.2011.05.026.
    • (2011) Cancer Cell , vol.20 , pp. 119-131
    • Ni, M.1    Chen, Y.2    Lim, E.3    Wimberly, H.4    Bailey, S.T.5    Imai, Y.6
  • 68
    • 37249009271 scopus 로고    scopus 로고
    • Motif module map reveals enforcement of aging by continual NF-kappaB activity
    • PMID:18055696
    • Adler AS, Sinha S, Kawahara TL, Zhang JY, Segal E, Chang HY. Motif module map reveals enforcement of aging by continual NF-kappaB activity. Genes Dev 2007; 21:3244-57; PMID:18055696; http://dx.doi.org/10.1101/gad.1588507.
    • (2007) Genes Dev , vol.21 , pp. 3244-3257
    • Adler, A.S.1    Sinha, S.2    Kawahara, T.L.3    Zhang, J.Y.4    Segal, E.5    Chang, H.Y.6
  • 69
    • 41849136515 scopus 로고    scopus 로고
    • Reversal of aging by NFkappaB blockade
    • PMID:18256548
    • Adler AS, Kawahara TL, Segal E, Chang HY. Reversal of aging by NFkappaB blockade. Cell Cycle 2008; 7:556-9; PMID:18256548; http://dx.doi.org/10.4161/cc. 7.5.5490.
    • (2008) Cell Cycle , vol.7 , pp. 556-559
    • Adler, A.S.1    Kawahara, T.L.2    Segal, E.3    Chang, H.Y.4
  • 70
    • 68749084845 scopus 로고    scopus 로고
    • Integrated expression profiling and ChIP-seq analyses of the growth inhibition response program of the androgen receptor
    • PMID:19668381
    • Lin B, Wang J, Hong X, Yan X, Hwang D, Cho JH, et al. Integrated expression profiling and ChIP-seq analyses of the growth inhibition response program of the androgen receptor. PLoS One 2009; 4:e6589; PMID:19668381; http://dx.doi.org/10.1371/journal.pone.0006589.
    • (2009) PLoS One , vol.4
    • Lin, B.1    Wang, J.2    Hong, X.3    Yan, X.4    Hwang, D.5    Cho, J.H.6
  • 71
    • 79952184341 scopus 로고    scopus 로고
    • Chromatin accessibility predetermines glucocorticoid receptor binding patterns
    • PMID:21258342
    • John S, Sabo PJ, Thurman RE, Sung MH, Biddie SC, Johnson TA, et al. Chromatin accessibility predetermines glucocorticoid receptor binding patterns. Nat Genet 2011; 43:264-8; PMID:21258342; http://dx.doi.org/10.1038/ng.759.
    • (2011) Nat Genet , vol.43 , pp. 264-268
    • John, S.1    Sabo, P.J.2    Thurman, R.E.3    Sung, M.H.4    Biddie, S.C.5    Johnson, T.A.6
  • 72
    • 77950605769 scopus 로고    scopus 로고
    • Genome-wide tissue-specific farnesoid X receptor binding in mouse liver and intestine
    • PMID:20091679
    • Thomas AM, Hart SN, Kong B, Fang J, Zhong XB, Guo GL. Genome-wide tissue-specific farnesoid X receptor binding in mouse liver and intestine. Hepatology 2010; 51:1410-9; PMID:20091679; http://dx.doi.org/10.1002/hep.23450.
    • (2010) Hepatology , vol.51 , pp. 1410-1419
    • Thomas, A.M.1    Hart, S.N.2    Kong, B.3    Fang, J.4    Zhong, X.B.5    Guo, G.L.6
  • 73
    • 79960745768 scopus 로고    scopus 로고
    • ChIP-seq defined genome-wide map of TGFâ/SMAD4 targets: Implications with clinical outcome of ovarian cancer
    • PMID:21799915
    • Kennedy BA, Deatherage DE, Gu F, Tang B, Chan MW, Nephew KP, et al. ChIP-seq defined genome-wide map of TGFâ/SMAD4 targets: implications with clinical outcome of ovarian cancer. PLoS One 2011; 6:e22606; PMID:21799915; http://dx.doi.org/10.1371/journal.pone.0022606.
    • (2011) PLoS One , vol.6
    • Kennedy, B.A.1    Deatherage, D.E.2    Gu, F.3    Tang, B.4    Chan, M.W.5    Nephew, K.P.6
  • 74
    • 0037194790 scopus 로고    scopus 로고
    • Coordination of circadian timing in mammals
    • PMID:12198538
    • Reppert SM, Weaver DR. Coordination of circadian timing in mammals. Nature 2002; 418:935-41; PMID:12198538; http://dx.doi.org/10.1038/nature00965.
    • (2002) Nature , vol.418 , pp. 935-941
    • Reppert, S.M.1    Weaver, D.R.2
  • 75
    • 77950634721 scopus 로고    scopus 로고
    • Cell-specific determinants of peroxisome proliferator-activated receptor gamma function in adipocytes and macrophages
    • PMID:20176806
    • Lefterova MI, Steger DJ, Zhuo D, Qatanani M, Mullican SE, Tuteja G, et al. Cell-specific determinants of peroxisome proliferator-activated receptor gamma function in adipocytes and macrophages. Mol Cell Biol 2010; 30:2078-89; PMID:20176806; http://dx.doi.org/10.1128/MCB.01651-09.
    • (2010) Mol Cell Biol , vol.30 , pp. 2078-2089
    • Lefterova, M.I.1    Steger, D.J.2    Zhuo, D.3    Qatanani, M.4    Mullican, S.E.5    Tuteja, G.6
  • 76
    • 61849119137 scopus 로고    scopus 로고
    • Cell-type selective chromatin remodeling defines the active subset of FOXA1-bound enhancers
    • PMID:19129543
    • Eeckhoute J, Lupien M, Meyer CA, Verzi MP, Shivdasani RA, Liu XS, et al. Cell-type selective chromatin remodeling defines the active subset of FOXA1-bound enhancers. Genome Res 2009; 19:372-80; PMID:19129543; http://dx.doi.org/10.1101/gr.084582.108.
    • (2009) Genome Res , vol.19 , pp. 372-380
    • Eeckhoute, J.1    Lupien, M.2    Meyer, C.A.3    Verzi, M.P.4    Shivdasani, R.A.5    Liu, X.S.6
  • 77
    • 84857710083 scopus 로고    scopus 로고
    • Roles of lineage-determining transcription factors in establishing open chromatin: Lessons from high-throughput studies
    • PMID:21744305
    • Heinz S, Glass CK. Roles of lineage-determining transcription factors in establishing open chromatin: lessons from high-throughput studies. Curr Top Microbiol Immunol 2012; 356:1-15; PMID:21744305; http://dx.doi.org/10.1007/82- 2011-142.
    • (2012) Curr Top Microbiol Immunol , vol.356 , pp. 1-15
    • Heinz, S.1    Glass, C.K.2
  • 78
    • 84859157183 scopus 로고    scopus 로고
    • Dynamic transformations of genome-wide epigenetic marking and transcriptional control establish T cell identity
    • PMID:22500808
    • Zhang JA, Mortazavi A, Williams BA, Wold BJ, Rothenberg EV. Dynamic transformations of genome-wide epigenetic marking and transcriptional control establish T cell identity. Cell 2012; 149:467-82; PMID:22500808; http://dx.doi.org/10.1016/j.cell.2012.01.056.
    • (2012) Cell , vol.149 , pp. 467-482
    • Zhang, J.A.1    Mortazavi, A.2    Williams, B.A.3    Wold, B.J.4    Rothenberg, E.V.5
  • 79
    • 67650758019 scopus 로고    scopus 로고
    • Androgen receptor regulates a distinct transcription program in androgen-independent prostate cancer
    • PMID:19632176
    • Wang Q, Li W, Zhang Y, Yuan X, Xu K, Yu J, et al. Androgen receptor regulates a distinct transcription program in androgen-independent prostate cancer. Cell 2009; 138:245-56; PMID:19632176; http://dx.doi.org/10.1016/j.cell. 2009.04.056.
    • (2009) Cell , vol.138 , pp. 245-256
    • Wang, Q.1    Li, W.2    Zhang, Y.3    Yuan, X.4    Xu, K.5    Yu, J.6
  • 80
    • 80053610846 scopus 로고    scopus 로고
    • Dual role of FoxA1 in androgen receptor binding to chromatin, androgen signalling and prostate cancer
    • PMID:21915096
    • Sahu B, Laakso M, Ovaska K, Mirtti T, Lundin J, Rannikko A, et al. Dual role of FoxA1 in androgen receptor binding to chromatin, androgen signalling and prostate cancer. EMBO J 2011; 30:3962-76; PMID:21915096; http://dx.doi.org/10. 1038/emboj.2011.328.
    • (2011) EMBO J , vol.30 , pp. 3962-3976
    • Sahu, B.1    Laakso, M.2    Ovaska, K.3    Mirtti, T.4    Lundin, J.5    Rannikko, A.6
  • 81
    • 84055190692 scopus 로고    scopus 로고
    • Distinct p53 genomic binding patterns in normal and cancer-derived human cells
    • PMID:22127205
    • Botcheva K, McCorkle SR, McCombie WR, Dunn JJ, Anderson CW. Distinct p53 genomic binding patterns in normal and cancer-derived human cells. Cell Cycle 2011; 10:4237-49; PMID:22127205; http://dx.doi.org/10.4161/cc.10.24.18383.
    • (2011) Cell Cycle , vol.10 , pp. 4237-4249
    • Botcheva, K.1    McCorkle, S.R.2    McCombie, W.R.3    Dunn, J.J.4    Anderson, C.W.5
  • 83
    • 77957885770 scopus 로고    scopus 로고
    • Transcription factor binding variation in the evolution of gene regulation
    • PMID:20864205
    • Dowell RD. Transcription factor binding variation in the evolution of gene regulation. Trends Genet 2010; 26:468-75; PMID:20864205; http://dx.doi.org/10.1016/j.tig.2010.08.005.
    • (2010) Trends Genet , vol.26 , pp. 468-475
    • Dowell, R.D.1
  • 84
    • 71749100795 scopus 로고    scopus 로고
    • Evolution of transcriptional control in mammals
    • PMID:19913406
    • Wilson MD, Odom DT. Evolution of transcriptional control in mammals. Curr Opin Genet Dev 2009; 19:579-85; PMID:19913406; http://dx.doi.org/10.1016/j.gde. 2009.10.003.
    • (2009) Curr Opin Genet Dev , vol.19 , pp. 579-585
    • Wilson, M.D.1    Odom, D.T.2
  • 85
    • 33645381936 scopus 로고    scopus 로고
    • The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells
    • PMID:16518401
    • Loh YH, Wu Q, Chew JL, Vega VB, Zhang W, Chen X, et al. The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells. Nat Genet 2006; 38:431-40; PMID:16518401; http://dx.doi.org/10.1038/ ng1760.
    • (2006) Nat Genet , vol.38 , pp. 431-440
    • Loh, Y.H.1    Wu, Q.2    Chew, J.L.3    Vega, V.B.4    Zhang, W.5    Chen, X.6
  • 86
    • 77954100084 scopus 로고    scopus 로고
    • Transposable elements have rewired the core regulatory network of human embryonic stem cells
    • PMID:20526341
    • Kunarso G, Chia NY, Jeyakani J, Hwang C, Lu X, Chan YS, et al. Transposable elements have rewired the core regulatory network of human embryonic stem cells. Nat Genet 2010; 42:631-4; PMID:20526341; http://dx.doi.org/10.1038/ng.600.
    • (2010) Nat Genet , vol.42 , pp. 631-634
    • Kunarso, G.1    Chia, N.Y.2    Jeyakani, J.3    Hwang, C.4    Lu, X.5    Chan, Y.S.6
  • 87
    • 34249818182 scopus 로고    scopus 로고
    • Tissue-specific transcriptional regulation has diverged significantly between human and mouse
    • PMID:17529977
    • Odom DT, Dowell RD, Jacobsen ES, Gordon W, Danford TW, MacIsaac KD, et al. Tissue-specific transcriptional regulation has diverged significantly between human and mouse. Nat Genet 2007; 39:730-2; PMID:17529977; http://dx.doi.org/10.1038/ng2047.
    • (2007) Nat Genet , vol.39 , pp. 730-732
    • Odom, D.T.1    Dowell, R.D.2    Jacobsen, E.S.3    Gordon, W.4    Danford, T.W.5    MacIsaac, K.D.6
  • 88
    • 79953756730 scopus 로고    scopus 로고
    • Species-specific strategies underlying conserved functions of metabolic transcription factors
    • PMID:21292830
    • Soccio RE, Tuteja G, Everett LJ, Li Z, Lazar MA, Kaestner KH. Species-specific strategies underlying conserved functions of metabolic transcription factors. Mol Endocrinol 2011; 25:694-706; PMID:21292830; http://dx.doi.org/10.1210/me.2010-0454.
    • (2011) Mol Endocrinol , vol.25 , pp. 694-706
    • Soccio, R.E.1    Tuteja, G.2    Everett, L.J.3    Li, Z.4    Lazar, M.A.5    Kaestner, K.H.6
  • 89
    • 77953062527 scopus 로고    scopus 로고
    • Five-vertebrate ChIP-seq reveals the evolutionary dynamics of transcription factor binding
    • PMID:20378774
    • Schmidt D, Wilson MD, Ballester B, Schwalie PC, Brown GD, Marshall A, et al. Five-vertebrate ChIP-seq reveals the evolutionary dynamics of transcription factor binding. Science 2010; 328:1036-40; PMID:20378774; http://dx.doi.org/10. 1126/science.1186176.
    • (2010) Science , vol.328 , pp. 1036-1040
    • Schmidt, D.1    Wilson, M.D.2    Ballester, B.3    Schwalie, P.C.4    Brown, G.D.5    Marshall, A.6
  • 90
    • 42349088542 scopus 로고    scopus 로고
    • Cell cycle genes are the evolutionarily conserved targets of the E2F4 transcription factor
    • PMID:17957245
    • Conboy CM, Spyrou C, Thorne NP, Wade EJ, Barbosa-Morais NL, Wilson MD, et al. Cell cycle genes are the evolutionarily conserved targets of the E2F4 transcription factor. PLoS One 2007; 2:e1061; PMID:17957245; http://dx.doi.org/10.1371/journal.pone.0001061.
    • (2007) PLoS One , vol.2
    • Conboy, C.M.1    Spyrou, C.2    Thorne, N.P.3    Wade, E.J.4    Barbosa-Morais, N.L.5    Wilson, M.D.6
  • 91
    • 54249099196 scopus 로고    scopus 로고
    • Species-specific transcription in mice carrying human chromosome 21
    • PMID:18787134
    • Wilson MD, Barbosa-Morais NL, Schmidt D, Conboy CM, Vanes L, Tybulewicz VL, et al. Species-specific transcription in mice carrying human chromosome 21. Science 2008; 322:434-8; PMID:18787134; http://dx.doi.org/10.1126/science. 1160930.
    • (2008) Science , vol.322 , pp. 434-438
    • Wilson, M.D.1    Barbosa-Morais, N.L.2    Schmidt, D.3    Conboy, C.M.4    Vanes, L.5    Tybulewicz, V.L.6
  • 92
    • 65349162170 scopus 로고    scopus 로고
    • Conservation of core gene expression in vertebrate tissues
    • PMID:19371447
    • Chan ET, Quon GT, Chua G, Babak T, Trochesset M, Zirngibl RA, et al. Conservation of core gene expression in vertebrate tissues. J Biol 2009; 8:33; PMID:19371447; http://dx.doi.org/10.1186/jbiol130.
    • (2009) J Biol , vol.8 , pp. 33
    • Chan, E.T.1    Quon, G.T.2    Chua, G.3    Babak, T.4    Trochesset, M.5    Zirngibl, R.A.6
  • 93
    • 33144462258 scopus 로고    scopus 로고
    • Structural and functional properties of genes involved in human cancer
    • PMID:16405732
    • Furney SJ, Higgins DG, Ouzounis CA, López-Bigas N. Structural and functional properties of genes involved in human cancer. BMC Genomics 2006; 7:3; PMID:16405732; http://dx.doi.org/10.1186/1471-2164-7-3.
    • (2006) BMC Genomics , vol.7 , pp. 3
    • Furney, S.J.1    Higgins, D.G.2    Ouzounis, C.A.3    López-Bigas, N.4
  • 94
    • 0034056133 scopus 로고    scopus 로고
    • Online Mendelian Inheritance in Man (OMIM) as a knowledgebase for human developmental disorders
    • PMID:10845565
    • Boyadjiev SA, Jabs EW. Online Mendelian Inheritance in Man (OMIM) as a knowledgebase for human developmental disorders. Clin Genet 2000; 57:253-66; PMID:10845565; http://dx.doi.org/10.1034/j.1399-0004.2000.570403.x.
    • (2000) Clin Genet , vol.57 , pp. 253-266
    • Boyadjiev, S.A.1    Jabs, E.W.2
  • 95
    • 78649725166 scopus 로고    scopus 로고
    • Mammalian circadian clock and metabolism - The epigenetic link
    • PMID:21048160
    • Bellet MM, Sassone-Corsi P. Mammalian circadian clock and metabolism - the epigenetic link. J Cell Sci 2010; 123:3837-48; PMID:21048160; http://dx.doi.org/10.1242/jcs.051649.
    • (2010) J Cell Sci , vol.123 , pp. 3837-3848
    • Bellet, M.M.1    Sassone-Corsi, P.2
  • 96
    • 79551534130 scopus 로고    scopus 로고
    • Crosstalk between components of circadian and metabolic cycles in mammals
    • PMID:21284980
    • Asher G, Schibler U. Crosstalk between components of circadian and metabolic cycles in mammals. Cell Metab 2011; 13:125-37; PMID:21284980; http://dx.doi.org/10.1016/j.cmet.2011.01.006.
    • (2011) Cell Metab , vol.13 , pp. 125-137
    • Asher, G.1    Schibler, U.2
  • 97
  • 98
    • 65349141868 scopus 로고    scopus 로고
    • Cell "circadian" cycle: New role for mammalian core clock genes
    • PMID:19221497
    • Borgs L, Beukelaers P, Vandenbosch R, Belachew S, Nguyen L, Malgrange B. Cell "circadian" cycle: new role for mammalian core clock genes. Cell Cycle 2009; 8:832-7; PMID:19221497; http://dx.doi.org/10.4161/cc.8.6.7869.
    • (2009) Cell Cycle , vol.8 , pp. 832-837
    • Borgs, L.1    Beukelaers, P.2    Vandenbosch, R.3    Belachew, S.4    Nguyen, L.5    Malgrange, B.6
  • 99
    • 34548089696 scopus 로고    scopus 로고
    • Unexpected paracrine action of prostate cancer cells harboring a new class of androgen receptor mutation - A new paradigm for cooperation among prostate tumor cells
    • PMID:17534890
    • Lapouge G, Erdmann E, Marcias G, Jagla M, Monge A, Kessler P, et al. Unexpected paracrine action of prostate cancer cells harboring a new class of androgen receptor mutation - a new paradigm for cooperation among prostate tumor cells. Int J Cancer 2007; 121:1238-44; PMID:17534890; http://dx.doi.org/10. 1002/ijc.22830.
    • (2007) Int J Cancer , vol.121 , pp. 1238-1244
    • Lapouge, G.1    Erdmann, E.2    Marcias, G.3    Jagla, M.4    Monge, A.5    Kessler, P.6
  • 100
    • 84861615355 scopus 로고    scopus 로고
    • AR-Q640X, a model to study the effects of constitutively active C-terminally truncated AR variants in prostate cancer cells
    • PMID:22362413
    • Streicher W, Zengerling F, Laschak M, Weidemann W, Höpfner M, Schrader AJ, et al. AR-Q640X, a model to study the effects of constitutively active C-terminally truncated AR variants in prostate cancer cells. World J Urol 2012; 30:333-9; PMID:22362413; http://dx.doi.org/10.1007/s00345-012-0842-0.
    • (2012) World J Urol , vol.30 , pp. 333-339
    • Streicher, W.1    Zengerling, F.2    Laschak, M.3    Weidemann, W.4    Höpfner, M.5    Schrader, A.J.6
  • 101
    • 65549168746 scopus 로고    scopus 로고
    • A novel androgen receptor splice variant is upregulated during prostate cancer progression and promotes androgen depletion-resistant growth
    • PMID:19244107
    • Guo Z, Yang X, Sun F, Jiang R, Linn DE, Chen H, et al. A novel androgen receptor splice variant is upregulated during prostate cancer progression and promotes androgen depletion-resistant growth. Cancer Res 2009; 69:2305-13; PMID:19244107; http://dx.doi.org/10.1158/0008-5472.CAN-08-3795.
    • (2009) Cancer Res , vol.69 , pp. 2305-2313
    • Guo, Z.1    Yang, X.2    Sun, F.3    Jiang, R.4    Linn, D.E.5    Chen, H.6
  • 102
    • 35148833549 scopus 로고    scopus 로고
    • Evidence for calpain-mediated androgen receptor cleavage as a mechanism for androgen independence
    • PMID:17909000
    • Libertini SJ, Tepper CG, Rodriguez V, Asmuth DM, Kung HJ, Mudryj M. Evidence for calpain-mediated androgen receptor cleavage as a mechanism for androgen independence. Cancer Res 2007; 67:9001-5; PMID:17909000; http://dx.doi.org/10.1158/0008-5472.CAN-07-1072.
    • (2007) Cancer Res , vol.67 , pp. 9001-9005
    • Libertini, S.J.1    Tepper, C.G.2    Rodriguez, V.3    Asmuth, D.M.4    Kung, H.J.5    Mudryj, M.6
  • 103
    • 76249101323 scopus 로고    scopus 로고
    • PML-RARalpha/RXR Alters the Epigenetic Landscape in Acute Promyelocytic Leukemia
    • PMID:20159609
    • Martens JH, Brinkman AB, Simmer F, Francoijs KJ, Nebbioso A, Ferrara F, et al. PML-RARalpha/RXR Alters the Epigenetic Landscape in Acute Promyelocytic Leukemia. Cancer Cell 2010; 17:173-85; PMID:20159609; http://dx.doi.org/10.1016/ j.ccr.2009.12.042.
    • (2010) Cancer Cell , vol.17 , pp. 173-185
    • Martens, J.H.1    Brinkman, A.B.2    Simmer, F.3    Francoijs, K.J.4    Nebbioso, A.5    Ferrara, F.6
  • 104
    • 76249120854 scopus 로고    scopus 로고
    • PML/RARalpha targets promoter regions containing PU.1 consensus and RARE half sites in acute promyelocytic leukemia
    • PMID:20159610
    • Wang K, Wang P, Shi J, Zhu X, He M, Jia X, et al. PML/RARalpha targets promoter regions containing PU.1 consensus and RARE half sites in acute promyelocytic leukemia. Cancer Cell 2010; 17:186-97; PMID:20159610; http://dx.doi.org/10.1016/j.ccr.2009.12.045.
    • (2010) Cancer Cell , vol.17 , pp. 186-197
    • Wang, K.1    Wang, P.2    Shi, J.3    Zhu, X.4    He, M.5    Jia, X.6
  • 105
    • 79951681879 scopus 로고    scopus 로고
    • Genome-wide functions of PML-RARα in acute promyelocytic leukaemia
    • PMID:21245861
    • Saeed S, Logie C, Stunnenberg HG, Martens JH. Genome-wide functions of PML-RARα in acute promyelocytic leukaemia. Br J Cancer 2011; 104:554-8; PMID:21245861; http://dx.doi.org/10.1038/sj.bjc.6606095.
    • (2011) Br J Cancer , vol.104 , pp. 554-558
    • Saeed, S.1    Logie, C.2    Stunnenberg, H.G.3    Martens, J.H.4
  • 106
    • 84863011366 scopus 로고    scopus 로고
    • Tumor-specific retargeting of an oncogenic transcription factor chimera results in dysregulation of chromatin and transcription
    • PMID:22086061
    • Patel M, Simon JM, Iglesia MD, Wu SB, McFadden AW, Lieb JD, et al. Tumor-specific retargeting of an oncogenic transcription factor chimera results in dysregulation of chromatin and transcription. Genome Res 2012; 22:259-70; PMID:22086061; http://dx.doi.org/10.1101/gr.125666.111.
    • (2012) Genome Res , vol.22 , pp. 259-270
    • Patel, M.1    Simon, J.M.2    Iglesia, M.D.3    Wu, S.B.4    McFadden, A.W.5    Lieb, J.D.6
  • 107
    • 77958562799 scopus 로고    scopus 로고
    • A PPARα promoter variant impairs ERR-dependent transactivation and decreases mortality after acute coronary ischemia in patients with diabetes
    • PMID:20838448
    • Cresci S, Huss JM, Beitelshees AL, Jones PG, Minton MR, Dorn GW, et al. A PPARα promoter variant impairs ERR-dependent transactivation and decreases mortality after acute coronary ischemia in patients with diabetes. PLoS One 2010; 5:e12584; PMID:20838448; http://dx.doi.org/10.1371/journal.pone. 0012584.
    • (2010) PLoS One , vol.5
    • Cresci, S.1    Huss, J.M.2    Beitelshees, A.L.3    Jones, P.G.4    Minton, M.R.5    Dorn, G.W.6
  • 108
    • 84857111200 scopus 로고    scopus 로고
    • DNase?I sensitivity QTLs are a major determinant of human expression variation
    • PMID:22307276
    • Degner JF, Pai AA, Pique-Regi R, Veyrieras JB, Gaffney DJ, Pickrell JK, et al. DNase?I sensitivity QTLs are a major determinant of human expression variation. Nature 2012; 482:390-4; PMID:22307276; http://dx.doi.org/10.1038/ nature10808.
    • (2012) Nature , vol.482 , pp. 390-394
    • Degner, J.F.1    Pai, A.A.2    Pique-Regi, R.3    Veyrieras, J.B.4    Gaffney, D.J.5    Pickrell, J.K.6
  • 109
    • 34548809118 scopus 로고    scopus 로고
    • Expression of SMARCB1 modulates steroid sensitivity in human lymphoblastoid cells: Identification of a promoter SNP that alters PARP1 binding and SMARCB1 expression
    • PMID:17616514
    • Pottier N, Cheok MH, Yang W, Assem M, Tracey L, Obenauer JC, et al. Expression of SMARCB1 modulates steroid sensitivity in human lymphoblastoid cells: identification of a promoter SNP that alters PARP1 binding and SMARCB1 expression. Hum Mol Genet 2007; 16:2261-71; PMID:17616514; http://dx.doi.org/10. 1093/hmg/ddm178.
    • (2007) Hum Mol Genet , vol.16 , pp. 2261-2271
    • Pottier, N.1    Cheok, M.H.2    Yang, W.3    Assem, M.4    Tracey, L.5    Obenauer, J.C.6
  • 110
    • 80053589769 scopus 로고    scopus 로고
    • Identification of cis-regulatory sequence variations in individual genome sequences
    • PMID:21989199
    • Worsley-Hunt R, Bernard V, Wasserman WW. Identification of cis-regulatory sequence variations in individual genome sequences. Genome Med 2011; 3:65; PMID:21989199; http://dx.doi.org/10.1186/gm281.
    • (2011) Genome Med , vol.3 , pp. 65
    • Worsley-Hunt, R.1    Bernard, V.2    Wasserman, W.W.3
  • 111
    • 77950833803 scopus 로고    scopus 로고
    • Variation in transcription factor binding among humans
    • PMID:20299548
    • Kasowski M, Grubert F, Heffelfinger C, Hariharan M, Asabere A, Waszak SM, et al. Variation in transcription factor binding among humans. Science 2010; 328:232-5; PMID:20299548; http://dx.doi.org/10.1126/science.1183621.
    • (2010) Science , vol.328 , pp. 232-235
    • Kasowski, M.1    Grubert, F.2    Heffelfinger, C.3    Hariharan, M.4    Asabere, A.5    Waszak, S.M.6
  • 112
    • 77950854479 scopus 로고    scopus 로고
    • Heritable individual-specific and allele-specific chromatin signatures in humans
    • PMID:20299549
    • McDaniell R, Lee BK, Song L, Liu Z, Boyle AP, Erdos MR, et al. Heritable individual-specific and allele-specific chromatin signatures in humans. Science 2010; 328:235-9; PMID:20299549; http://dx.doi.org/10.1126/science.1184655.
    • (2010) Science , vol.328 , pp. 235-239
    • McDaniell, R.1    Lee, B.K.2    Song, L.3    Liu, Z.4    Boyle, A.P.5    Erdos, M.R.6
  • 113
    • 80052223272 scopus 로고    scopus 로고
    • An alternative splicing switch regulates embryonic stem cell pluripotency and reprogramming
    • PMID:21924763
    • Gabut M, Samavarchi-Tehrani P, Wang X, Slobodeniuc V, O'Hanlon D, Sung HK, et al. An alternative splicing switch regulates embryonic stem cell pluripotency and reprogramming. Cell 2011; 147:132-46; PMID:21924763; http://dx.doi.org/10.1016/j.cell.2011.08.023.
    • (2011) Cell , vol.147 , pp. 132-146
    • Gabut, M.1    Samavarchi-Tehrani, P.2    Wang, X.3    Slobodeniuc, V.4    O'Hanlon, D.5    Sung, H.K.6
  • 114
    • 24644519490 scopus 로고    scopus 로고
    • The transcriptional landscape of the mammalian genome
    • FANTOM Consortium; RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group). PMID:16141072
    • Carninci P, Kasukawa T, Katayama S, Gough J, Frith MC, Maeda N, et al. FANTOM Consortium; RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group). The transcriptional landscape of the mammalian genome. Science 2005; 309:1559-63; PMID:16141072; http://dx.doi.org/ 10.1126/science.1112014.
    • (2005) Science , vol.309 , pp. 1559-1563
    • Carninci, P.1    Kasukawa, T.2    Katayama, S.3    Gough, J.4    Frith, M.C.5    Maeda, N.6
  • 115
    • 34250305146 scopus 로고    scopus 로고
    • Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
    • ENCODE Project Consortium; NISC Comparative Sequencing Program; Baylor College of Medicine Human Genome Sequencing Center; Washington University Genome Sequencing Center; Broad Institute; Children's Hospital Oakland Research Institute. PMID:17571346
    • Birney E, Stamatoyannopoulos JA, Dutta A, GuigóR, Gingeras TR, Margulies EH, et al. ENCODE Project Consortium; NISC Comparative Sequencing Program; Baylor College of Medicine Human Genome Sequencing Center; Washington University Genome Sequencing Center; Broad Institute; Children's Hospital Oakland Research Institute. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature 2007; 447:799-816; PMID:17571346; http://dx.doi.org/10.1038/nature05874.
    • (2007) Nature , vol.447 , pp. 799-816
    • Birney, E.1    Stamatoyannopoulos, J.A.2    Dutta, A.3    Guigó, R.4    Gingeras, T.R.5    Margulies, E.H.6
  • 116
    • 19944376457 scopus 로고    scopus 로고
    • Global identification of human transcribed sequences with genome tiling arrays
    • PMID:15539566
    • Bertone P, Stolc V, Royce TE, Rozowsky JS, Urban AE, Zhu X, et al. Global identification of human transcribed sequences with genome tiling arrays. Science 2004; 306:2242-6; PMID:15539566; http://dx.doi.org/10.1126/science. 1103388.
    • (2004) Science , vol.306 , pp. 2242-2246
    • Bertone, P.1    Stolc, V.2    Royce, T.E.3    Rozowsky, J.S.4    Urban, A.E.5    Zhu, X.6
  • 117
    • 34249088350 scopus 로고    scopus 로고
    • Genome-wide transcription and the implications for genomic organization
    • PMID:17486121
    • Kapranov P, Willingham AT, Gingeras TR. Genome-wide transcription and the implications for genomic organization. Nat Rev Genet 2007; 8:413-23; PMID:17486121; http://dx.doi.org/10.1038/nrg2083.
    • (2007) Nat Rev Genet , vol.8 , pp. 413-423
    • Kapranov, P.1    Willingham, A.T.2    Gingeras, T.R.3
  • 118
    • 80053045739 scopus 로고    scopus 로고
    • Molecular mechanisms of long noncoding RNAs
    • PMID:21925379
    • Wang KC, Chang HY. Molecular mechanisms of long noncoding RNAs. Mol Cell 2011; 43:904-14; PMID:21925379; http://dx.doi.org/10.1016/j.molcel.2011.08.018.
    • (2011) Mol Cell , vol.43 , pp. 904-914
    • Wang, K.C.1    Chang, H.Y.2
  • 119
    • 34250729138 scopus 로고    scopus 로고
    • Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs
    • PMID:17604720
    • Rinn JL, Kertesz M, Wang JK, Squazzo SL, Xu X, Brugmann SA, et al. Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs. Cell 2007; 129:1311-23; PMID:17604720; http://dx.doi.org/10. 1016/j.cell.2007.05.022.
    • (2007) Cell , vol.129 , pp. 1311-1323
    • Rinn, J.L.1    Kertesz, M.2    Wang, J.K.3    Squazzo, S.L.4    Xu, X.5    Brugmann, S.A.6
  • 120
    • 77954572735 scopus 로고    scopus 로고
    • Long noncoding RNA as modular scaffold of histone modification complexes
    • PMID:20616235
    • Tsai MC, Manor O, Wan Y, Mosammaparast N, Wang JK, Lan F, et al. Long noncoding RNA as modular scaffold of histone modification complexes. Science 2010; 329:689-93; PMID:20616235; http://dx.doi.org/10.1126/science.1192002.
    • (2010) Science , vol.329 , pp. 689-693
    • Tsai, M.C.1    Manor, O.2    Wan, Y.3    Mosammaparast, N.4    Wang, J.K.5    Lan, F.6
  • 121
    • 84857066786 scopus 로고    scopus 로고
    • Modular regulatory principles of large non-coding RNAs
    • PMID:22337053
    • Guttman M, Rinn JL. Modular regulatory principles of large non-coding RNAs. Nature 2012; 482:339-46; PMID:22337053; http://dx.doi.org/10.1038/ nature10887.
    • (2012) Nature , vol.482 , pp. 339-346
    • Guttman, M.1    Rinn, J.L.2
  • 122
    • 33748093767 scopus 로고    scopus 로고
    • Linking oncogenic pathways with therapeutic opportunities
    • PMID:16915294
    • Bild AH, Potti A, Nevins JR. Linking oncogenic pathways with therapeutic opportunities. Nat Rev Cancer 2006; 6:735-41; PMID:16915294; http://dx.doi.org/10.1038/nrc1976.
    • (2006) Nat Rev Cancer , vol.6 , pp. 735-741
    • Bild, A.H.1    Potti, A.2    Nevins, J.R.3
  • 123
    • 77950262538 scopus 로고    scopus 로고
    • Nucleosome dynamics define transcriptional enhancers
    • PMID:20208536
    • He HH, Meyer CA, Shin H, Bailey ST, Wei G, Wang Q, et al. Nucleosome dynamics define transcriptional enhancers. Nat Genet 2010; 42:343-7; PMID:20208536; http://dx.doi.org/10.1038/ng.545.
    • (2010) Nat Genet , vol.42 , pp. 343-347
    • He, H.H.1    Meyer, C.A.2    Shin, H.3    Bailey, S.T.4    Wei, G.5    Wang, Q.6
  • 124
    • 84861889354 scopus 로고    scopus 로고
    • Differential DNase i hypersensitivity reveals factor-dependent chromatin dynamics
    • PMID:22508765
    • He HH, Meyer CA, Chen MW, Jordan VC, Brown M, Liu XS. Differential DNase I hypersensitivity reveals factor-dependent chromatin dynamics. Genome Res 2012; 22:1015-25; PMID:22508765; http://dx.doi.org/10.1101/gr.133280.111.
    • (2012) Genome Res , vol.22 , pp. 1015-1025
    • He, H.H.1    Meyer, C.A.2    Chen, M.W.3    Jordan, V.C.4    Brown, M.5    Liu, X.S.6
  • 125
    • 79952266465 scopus 로고    scopus 로고
    • Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data
    • PMID:21106904
    • Pique-Regi R, Degner JF, Pai AA, Gaffney DJ, Gilad Y, Pritchard JK. Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data. Genome Res 2011; 21:447-55; PMID:21106904; http://dx.doi.org/10.1101/gr.112623.110.
    • (2011) Genome Res , vol.21 , pp. 447-455
    • Pique-Regi, R.1    Degner, J.F.2    Pai, A.A.3    Gaffney, D.J.4    Gilad, Y.5    Pritchard, J.K.6
  • 126
    • 83455164709 scopus 로고    scopus 로고
    • Non-DNA-binding cofactors enhance DNA-binding specificity of a transcriptional regulatory complex
    • PMID:22146299
    • Siggers T, Duyzend MH, Reddy J, Khan S, Bulyk ML. Non-DNA-binding cofactors enhance DNA-binding specificity of a transcriptional regulatory complex. Mol Syst Biol 2011; 7:555; PMID:22146299; http://dx.doi.org/10.1038/ msb.2011.89.
    • (2011) Mol Syst Biol , vol.7 , pp. 555
    • Siggers, T.1    Duyzend, M.H.2    Reddy, J.3    Khan, S.4    Bulyk, M.L.5
  • 127
    • 77951935861 scopus 로고    scopus 로고
    • Genome-wide MyoD binding in skeletal muscle cells: A potential for broad cellular reprogramming
    • PMID:20412780
    • Cao Y, Yao Z, Sarkar D, Lawrence M, Sanchez GJ, Parker MH, et al. Genome-wide MyoD binding in skeletal muscle cells: a potential for broad cellular reprogramming. Dev Cell 2010; 18:662-74; PMID:20412780; http://dx.doi.org/10.1016/j.devcel.2010.02.014.
    • (2010) Dev Cell , vol.18 , pp. 662-674
    • Cao, Y.1    Yao, Z.2    Sarkar, D.3    Lawrence, M.4    Sanchez, G.J.5    Parker, M.H.6
  • 128
    • 84861181567 scopus 로고    scopus 로고
    • CistromeMap: A knowledgebase and web server for ChIP-Seq and DNase-Seq studies in mouse and human
    • PMID:22495751
    • Qin B, Zhou M, Ge Y, Taing L, Liu T, Wang Q, et al. CistromeMap: a knowledgebase and web server for ChIP-Seq and DNase-Seq studies in mouse and human. Bioinformatics 2012; 28:1411-2; PMID:22495751; http://dx.doi.org/10.1093/ bioinformatics/bts157.
    • (2012) Bioinformatics , vol.28 , pp. 1411-1412
    • Qin, B.1    Zhou, M.2    Ge, Y.3    Taing, L.4    Liu, T.5    Wang, Q.6
  • 129
    • 84864452368 scopus 로고    scopus 로고
    • Cscan: Finding common regulators of a set of genes by using a collection of genome-wide ChIP-seq datasets
    • PMID:22669907
    • Zambelli F, Prazzoli GM, Pesole G, Pavesi G. Cscan: finding common regulators of a set of genes by using a collection of genome-wide ChIP-seq datasets. Nucleic Acids Res 2012; 40(Web Server issue):W510-5; PMID:22669907; http://dx.doi.org/10.1093/nar/gks483.
    • (2012) Nucleic Acids Res , vol.40 , Issue.WEB SERVER ISSUE
    • Zambelli, F.1    Prazzoli, G.M.2    Pesole, G.3    Pavesi, G.4
  • 130
    • 84862908850 scopus 로고    scopus 로고
    • Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation
    • PMID:22265404
    • Li G, Ruan X, Auerbach RK, Sandhu KS, Zheng M, Wang P, et al. Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation. Cell 2012; 148:84-98; PMID:22265404; http://dx.doi.org/10.1016/j.cell.2011.12.014.
    • (2012) Cell , vol.148 , pp. 84-98
    • Li, G.1    Ruan, X.2    Auerbach, R.K.3    Sandhu, K.S.4    Zheng, M.5    Wang, P.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.