-
1
-
-
77950359470
-
Lineage-specific transcription factors and the evolution of gene regulatory networks
-
PMID:20081217
-
Nowick K, Stubbs L. Lineage-specific transcription factors and the evolution of gene regulatory networks. Brief Funct Genomics 2010; 9:65-78; PMID:20081217; http://dx.doi.org/10.1093/bfgp/elp056.
-
(2010)
Brief Funct Genomics
, vol.9
, pp. 65-78
-
-
Nowick, K.1
Stubbs, L.2
-
2
-
-
79952660821
-
Control of the embryonic stem cell state
-
PMID:21414485
-
Young RA. Control of the embryonic stem cell state. Cell 2011; 144:940-54; PMID:21414485; http://dx.doi.org/10.1016/j.cell.2011.01.032.
-
(2011)
Cell
, vol.144
, pp. 940-954
-
-
Young, R.A.1
-
3
-
-
80355146399
-
Transcriptional regulation of macrophage polarization: Enabling diversity with identity
-
PMID:22025054
-
Lawrence T, Natoli G. Transcriptional regulation of macrophage polarization: enabling diversity with identity. Nat Rev Immunol 2011; 11:750-61; PMID:22025054; http://dx.doi.org/10.1038/nri3088.
-
(2011)
Nat Rev Immunol
, vol.11
, pp. 750-761
-
-
Lawrence, T.1
Natoli, G.2
-
4
-
-
0034667792
-
Orchestrated response: A symphony of transcription factors for gene control
-
PMID:11040209
-
Lemon B, Tjian R. Orchestrated response: a symphony of transcription factors for gene control. Genes Dev 2000; 14:2551-69; PMID:11040209; http://dx.doi.org/10.1101/gad.831000.
-
(2000)
Genes Dev
, vol.14
, pp. 2551-2569
-
-
Lemon, B.1
Tjian, R.2
-
5
-
-
79960711532
-
Choreographing pluripotency and cell fate with transcription factors
-
Gonzales KA, Ng HH. Choreographing pluripotency and cell fate with transcription factors. Biochim Biophys Acta 2011; 1809:337-49.
-
(2011)
Biochim Biophys Acta
, vol.1809
, pp. 337-349
-
-
Gonzales, K.A.1
Ng, H.H.2
-
6
-
-
70350491412
-
How eukaryotic genes are transcribed
-
PMID:19514890
-
Venters BJ, Pugh BF. How eukaryotic genes are transcribed. Crit Rev Biochem Mol Biol 2009; 44:117-41; PMID:19514890.
-
(2009)
Crit Rev Biochem Mol Biol
, vol.44
, pp. 117-141
-
-
Venters, B.J.1
Pugh, B.F.2
-
7
-
-
82855170864
-
Old and new functions of proneural factors revealed by the genome-wide characterization of their transcriptional targets
-
PMID:22101262
-
Castro DS, Guillemot F. Old and new functions of proneural factors revealed by the genome-wide characterization of their transcriptional targets. Cell Cycle 2011; 10:4026-31; PMID:22101262; http://dx.doi.org/10.4161/cc.10.23. 18578.
-
(2011)
Cell Cycle
, vol.10
, pp. 4026-4031
-
-
Castro, D.S.1
Guillemot, F.2
-
8
-
-
62549128139
-
A census of human transcription factors: Function, expression and evolution
-
PMID:19274049
-
Vaquerizas JM, Kummerfeld SK, Teichmann SA, Luscombe NM. A census of human transcription factors: function, expression and evolution. Nat Rev Genet 2009; 10:252-63; PMID:19274049; http://dx.doi.org/10.1038/nrg2538.
-
(2009)
Nat Rev Genet
, vol.10
, pp. 252-263
-
-
Vaquerizas, J.M.1
Kummerfeld, S.K.2
Teichmann, S.A.3
Luscombe, N.M.4
-
9
-
-
67650480389
-
Cistromics of hormone-dependent cancer
-
PMID:19369485
-
Lupien M, Brown M. Cistromics of hormone-dependent cancer. Endocr Relat Cancer 2009; 16:381-9; PMID:19369485; http://dx.doi.org/10.1677/ERC-09-0038.
-
(2009)
Endocr Relat Cancer
, vol.16
, pp. 381-389
-
-
Lupien, M.1
Brown, M.2
-
10
-
-
55049107572
-
Unique ERalpha cistromes control cell type-specific gene regulation
-
PMID:18818283
-
Krum SA, Miranda-Carboni GA, Lupien M, Eeckhoute J, Carroll JS, Brown M. Unique ERalpha cistromes control cell type-specific gene regulation. Mol Endocrinol 2008; 22:2393-406; PMID:18818283; http://dx.doi.org/10.1210/me.2008- 0100.
-
(2008)
Mol Endocrinol
, vol.22
, pp. 2393-2406
-
-
Krum, S.A.1
Miranda-Carboni, G.A.2
Lupien, M.3
Eeckhoute, J.4
Carroll, J.S.5
Brown, M.6
-
11
-
-
77953808473
-
Next-generation genomics: An integrative approach
-
PMID:20531367
-
Hawkins RD, Hon GC, Ren B. Next-generation genomics: an integrative approach. Nat Rev Genet 2010; 11:476-86; PMID:20531367.
-
(2010)
Nat Rev Genet
, vol.11
, pp. 476-486
-
-
Hawkins, R.D.1
Hon, G.C.2
Ren, B.3
-
12
-
-
68949213578
-
Insights from genomic profiling of transcription factors
-
PMID:19668247
-
Farnham PJ. Insights from genomic profiling of transcription factors. Nat Rev Genet 2009; 10:605-16; PMID:19668247; http://dx.doi.org/10.1038/nrg2636.
-
(2009)
Nat Rev Genet
, vol.10
, pp. 605-616
-
-
Farnham, P.J.1
-
13
-
-
79953044960
-
Genome-wide transcription factor binding: Beyond direct target regulation
-
PMID:21295369
-
MacQuarrie KL, Fong AP, Morse RH, Tapscott SJ. Genome-wide transcription factor binding: beyond direct target regulation. Trends Genet 2011; 27:141-8; PMID:21295369; http://dx.doi.org/10.1016/j.tig.2011.01.001.
-
(2011)
Trends Genet
, vol.27
, pp. 141-148
-
-
MacQuarrie, K.L.1
Fong, A.P.2
Morse, R.H.3
Tapscott, S.J.4
-
14
-
-
79959360046
-
Application of ChIP-Seq and related techniques to the study of immune function
-
PMID:21703538
-
Northrup DL, Zhao K. Application of ChIP-Seq and related techniques to the study of immune function. Immunity 2011; 34:830-42; PMID:21703538; http://dx.doi.org/10.1016/j.immuni.2011.06.002.
-
(2011)
Immunity
, vol.34
, pp. 830-842
-
-
Northrup, D.L.1
Zhao, K.2
-
15
-
-
70349312354
-
ChIP-seq: Advantages and challenges of a maturing technology
-
PMID:19736561
-
Park PJ. ChIP-seq: advantages and challenges of a maturing technology. Nat Rev Genet 2009; 10:669-80; PMID:19736561; http://dx.doi.org/10.1038/nrg2641.
-
(2009)
Nat Rev Genet
, vol.10
, pp. 669-680
-
-
Park, P.J.1
-
16
-
-
33644638521
-
Estrogen receptors and human disease
-
PMID:16511588
-
Deroo BJ, Korach KS. Estrogen receptors and human disease. J Clin Invest 2006; 116:561-70; PMID:16511588; http://dx.doi.org/10.1172/JCI27987.
-
(2006)
J Clin Invest
, vol.116
, pp. 561-570
-
-
Deroo, B.J.1
Korach, K.S.2
-
17
-
-
34447523339
-
Estrogen receptors: How do they signal and what are their targets
-
PMID:17615392
-
Heldring N, Pike A, Andersson S, Matthews J, Cheng G, Hartman J, et al. Estrogen receptors: how do they signal and what are their targets. Physiol Rev 2007; 87:905-31; PMID:17615392; http://dx.doi.org/10.1152/physrev.00026.2006.
-
(2007)
Physiol Rev
, vol.87
, pp. 905-931
-
-
Heldring, N.1
Pike, A.2
Andersson, S.3
Matthews, J.4
Cheng, G.5
Hartman, J.6
-
18
-
-
57349113761
-
Regulation of ERBB2 by oestrogen receptor-PAX2 determines response to tamoxifen
-
PMID:19005469
-
Hurtado A, Holmes KA, Geistlinger TR, Hutcheson IR, Nicholson RI, Brown M, et al. Regulation of ERBB2 by oestrogen receptor-PAX2 determines response to tamoxifen. Nature 2008; 456:663-6; PMID:19005469; http://dx.doi.org/10.1038/ nature07483.
-
(2008)
Nature
, vol.456
, pp. 663-666
-
-
Hurtado, A.1
Holmes, K.A.2
Geistlinger, T.R.3
Hutcheson, I.R.4
Nicholson, R.I.5
Brown, M.6
-
19
-
-
66549085342
-
ChIP-Seq of ERalpha and RNA polymerase II defines genes differentially responding to ligands
-
PMID:19339991
-
Welboren WJ, van Driel MA, Janssen-Megens EM, van Heeringen SJ, Sweep FC, Span PN, et al. ChIP-Seq of ERalpha and RNA polymerase II defines genes differentially responding to ligands. EMBO J 2009; 28:1418-28; PMID:19339991; http://dx.doi.org/10.1038/emboj.2009.88.
-
(2009)
EMBO J
, vol.28
, pp. 1418-1428
-
-
Welboren, W.J.1
Van Driel, M.A.2
Janssen-Megens, E.M.3
Van Heeringen, S.J.4
Sweep, F.C.5
Span, P.N.6
-
20
-
-
77951900245
-
Genomic analyses of hormone signaling and gene regulation
-
PMID:20148673
-
Cheung E, Kraus WL. Genomic analyses of hormone signaling and gene regulation. Annu Rev Physiol 2010; 72:191-218; PMID:20148673; http://dx.doi.org/10.1146/annurev-physiol-021909-135840.
-
(2010)
Annu Rev Physiol
, vol.72
, pp. 191-218
-
-
Cheung, E.1
Kraus, W.L.2
-
21
-
-
34347345081
-
Whole-genome cartography of estrogen receptor alpha binding sites
-
PMID:17542648
-
Lin CY, Vega VB, Thomsen JS, Zhang T, Kong SL, Xie M, et al. Whole-genome cartography of estrogen receptor alpha binding sites. PLoS Genet 2007; 3:e87; PMID:17542648; http://dx.doi.org/10.1371/journal.pgen.0030087.
-
(2007)
PLoS Genet
, vol.3
-
-
Lin, C.Y.1
Vega, V.B.2
Thomsen, J.S.3
Zhang, T.4
Kong, S.L.5
Xie, M.6
-
22
-
-
40849085514
-
FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcription
-
PMID:18358809
-
Lupien M, Eeckhoute J, Meyer CA, Wang Q, Zhang Y, Li W, et al. FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcription. Cell 2008; 132:958-70; PMID:18358809; http://dx.doi.org/10.1016/ j.cell.2008.01.018.
-
(2008)
Cell
, vol.132
, pp. 958-970
-
-
Lupien, M.1
Eeckhoute, J.2
Meyer, C.A.3
Wang, Q.4
Zhang, Y.5
Li, W.6
-
23
-
-
78651250284
-
FOXA1 is a key determinant of estrogen receptor function and endocrine response
-
PMID:21151129
-
Hurtado A, Holmes KA, Ross-Innes CS, Schmidt D, Carroll JS. FOXA1 is a key determinant of estrogen receptor function and endocrine response. Nat Genet 2011; 43:27-33; PMID:21151129; http://dx.doi.org/10.1038/ng.730.
-
(2011)
Nat Genet
, vol.43
, pp. 27-33
-
-
Hurtado, A.1
Holmes, K.A.2
Ross-Innes, C.S.3
Schmidt, D.4
Carroll, J.S.5
-
24
-
-
79955836460
-
A rapid, extensive, and transient transcriptional response to estrogen signaling in breast cancer cells
-
PMID:21549415
-
Hah N, Danko CG, Core L, Waterfall JJ, Siepel A, Lis JT, et al. A rapid, extensive, and transient transcriptional response to estrogen signaling in breast cancer cells. Cell 2011; 145:622-34; PMID:21549415; http://dx.doi.org/10. 1016/j.cell.2011.03.042.
-
(2011)
Cell
, vol.145
, pp. 622-634
-
-
Hah, N.1
Danko, C.G.2
Core, L.3
Waterfall, J.J.4
Siepel, A.5
Lis, J.T.6
-
25
-
-
72549085551
-
Genomic actions of estrogen receptor alpha: What are the targets and how are they regulated?
-
PMID:19628648
-
Welboren WJ, Sweep FC, Span PN, Stunnenberg HG. Genomic actions of estrogen receptor alpha: what are the targets and how are they regulated? Endocr Relat Cancer 2009; 16:1073-89; PMID:19628648; http://dx.doi.org/10.1677/ERC-09- 0086.
-
(2009)
Endocr Relat Cancer
, vol.16
, pp. 1073-1089
-
-
Welboren, W.J.1
Sweep, F.C.2
Span, P.N.3
Stunnenberg, H.G.4
-
26
-
-
77957673898
-
Growth factor stimulation induces a distinct ER(alpha) cistrome underlying breast cancer endocrine resistance
-
PMID:20889718
-
Lupien M, Meyer CA, Bailey ST, Eeckhoute J, Cook J, Westerling T, et al. Growth factor stimulation induces a distinct ER(alpha) cistrome underlying breast cancer endocrine resistance. Genes Dev 2010; 24:2219-27; PMID:20889718; http://dx.doi.org/10.1101/gad.1944810.
-
(2010)
Genes Dev
, vol.24
, pp. 2219-2227
-
-
Lupien, M.1
Meyer, C.A.2
Bailey, S.T.3
Eeckhoute, J.4
Cook, J.5
Westerling, T.6
-
27
-
-
57349173558
-
AKT alters genome-wide estrogen receptor alpha binding and impacts estrogen signaling in breast cancer
-
PMID:18838536
-
Bhat-Nakshatri P, Wang G, Appaiah H, Luktuke N, Carroll JS, Geistlinger TR, et al. AKT alters genome-wide estrogen receptor alpha binding and impacts estrogen signaling in breast cancer. Mol Cell Biol 2008; 28:7487-503; PMID:18838536; http://dx.doi.org/10.1128/MCB.00799-08.
-
(2008)
Mol Cell Biol
, vol.28
, pp. 7487-7503
-
-
Bhat-Nakshatri, P.1
Wang, G.2
Appaiah, H.3
Luktuke, N.4
Carroll, J.S.5
Geistlinger, T.R.6
-
28
-
-
77955629953
-
Genome-wide analysis of estrogen receptor alpha DNA binding and tethering mechanisms identifies Runx1 as a novel tethering factor in receptor-mediated transcriptional activation
-
PMID:20547749
-
Stender JD, Kim K, Charn TH, Komm B, Chang KC, Kraus WL, et al. Genome-wide analysis of estrogen receptor alpha DNA binding and tethering mechanisms identifies Runx1 as a novel tethering factor in receptor-mediated transcriptional activation. Mol Cell Biol 2010; 30:3943-55; PMID:20547749; http://dx.doi.org/10.1128/MCB.00118-10.
-
(2010)
Mol Cell Biol
, vol.30
, pp. 3943-3955
-
-
Stender, J.D.1
Kim, K.2
Charn, T.H.3
Komm, B.4
Chang, K.C.5
Kraus, W.L.6
-
29
-
-
84856008906
-
Differential oestrogen receptor binding is associated with clinical outcome in breast cancer
-
PMID:22217937
-
Ross-Innes CS, Stark R, Teschendorff AE, Holmes KA, Ali HR, Dunning MJ, et al. Differential oestrogen receptor binding is associated with clinical outcome in breast cancer. Nature 2012; 481:389-93; PMID:22217937.
-
(2012)
Nature
, vol.481
, pp. 389-393
-
-
Ross-Innes, C.S.1
Stark, R.2
Teschendorff, A.E.3
Holmes, K.A.4
Ali, H.R.5
Dunning, M.J.6
-
30
-
-
0034735861
-
Estrogen receptor pathways to AP-1
-
PMID:11162939
-
Kushner PJ, Agard DA, Greene GL, Scanlan TS, Shiau AK, Uht RM, et al. Estrogen receptor pathways to AP-1. J Steroid Biochem Mol Biol 2000; 74:311-7; PMID:11162939; http://dx.doi.org/10.1016/S0960-0760(00)00108-4.
-
(2000)
J Steroid Biochem Mol Biol
, vol.74
, pp. 311-317
-
-
Kushner, P.J.1
Agard, D.A.2
Greene, G.L.3
Scanlan, T.S.4
Shiau, A.K.5
Uht, R.M.6
-
31
-
-
77957348625
-
Combinatorial transcriptional control in blood stem/progenitor cells: Genome-wide analysis of ten major transcriptional regulators
-
PMID:20887958
-
Wilson NK, Foster SD, Wang X, Knezevic K, Schütte J, Kaimakis P, et al. Combinatorial transcriptional control in blood stem/progenitor cells: genome-wide analysis of ten major transcriptional regulators. Cell Stem Cell 2010; 7:532-44; PMID:20887958; http://dx.doi.org/10.1016/j.stem.2010.07.016.
-
(2010)
Cell Stem Cell
, vol.7
, pp. 532-544
-
-
Wilson, N.K.1
Foster, S.D.2
Wang, X.3
Knezevic, K.4
Schütte, J.5
Kaimakis, P.6
-
32
-
-
79953297708
-
Genome-wide analysis of transcription factor E2F1 mutant proteins reveals that N- And C-terminal protein interaction domains do not participate in targeting E2F1 to the human genome
-
PMID:21310950
-
Cao AR, Rabinovich R, Xu M, Xu X, Jin VX, Farnham PJ. Genome-wide analysis of transcription factor E2F1 mutant proteins reveals that N- and C-terminal protein interaction domains do not participate in targeting E2F1 to the human genome. J Biol Chem 2011; 286:11985-96; PMID:21310950; http://dx.doi.org/10.1074/jbc.M110.217158.
-
(2011)
J Biol Chem
, vol.286
, pp. 11985-11996
-
-
Cao, A.R.1
Rabinovich, R.2
Xu, M.3
Xu, X.4
Jin, V.X.5
Farnham, P.J.6
-
33
-
-
74249118523
-
DNA specificity determinants associate with distinct transcription factor functions
-
PMID:20019798
-
Hollenhorst PC, Chandler KJ, Poulsen RL, Johnson WE, Speck NA, Graves BJ. DNA specificity determinants associate with distinct transcription factor functions. PLoS Genet 2009; 5:e1000778; PMID:20019798; http://dx.doi.org/10. 1371/journal.pgen.1000778.
-
(2009)
PLoS Genet
, vol.5
-
-
Hollenhorst, P.C.1
Chandler, K.J.2
Poulsen, R.L.3
Johnson, W.E.4
Speck, N.A.5
Graves, B.J.6
-
34
-
-
67649982744
-
Diversity and complexity in DNA recognition by transcription factors
-
PMID:19443739
-
Badis G, Berger MF, Philippakis AA, Talukder S, Gehrke AR, Jaeger SA, et al. Diversity and complexity in DNA recognition by transcription factors. Science 2009; 324:1720-3; PMID:19443739; http://dx.doi.org/10.1126/science. 1162327.
-
(2009)
Science
, vol.324
, pp. 1720-1723
-
-
Badis, G.1
Berger, M.F.2
Philippakis, A.A.3
Talukder, S.4
Gehrke, A.R.5
Jaeger, S.A.6
-
35
-
-
77951118936
-
Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis
-
PMID:20393566
-
Gupta RA, Shah N, Wang KC, Kim J, Horlings HM, Wong DJ, et al. Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis. Nature 2010; 464:1071-6; PMID:20393566; http://dx.doi.org/10.1038/nature08975.
-
(2010)
Nature
, vol.464
, pp. 1071-1076
-
-
Gupta, R.A.1
Shah, N.2
Wang, K.C.3
Kim, J.4
Horlings, H.M.5
Wong, D.J.6
-
36
-
-
33847057887
-
Relationships between p63 binding, DNA sequence, transcription activity, and biological function in human cells
-
PMID:17188034
-
Yang A, Zhu Z, Kapranov P, McKeon F, Church GM, Gingeras TR, et al. Relationships between p63 binding, DNA sequence, transcription activity, and biological function in human cells. Mol Cell 2006; 24:593-602; PMID:17188034; http://dx.doi.org/10.1016/j.molcel.2006.10.018.
-
(2006)
Mol Cell
, vol.24
, pp. 593-602
-
-
Yang, A.1
Zhu, Z.2
Kapranov, P.3
McKeon, F.4
Church, G.M.5
Gingeras, T.R.6
-
37
-
-
55549103719
-
E2F in vivo binding specificity: Comparison of consensus versus nonconsensus binding sites
-
PMID:18836037
-
Rabinovich A, Jin VX, Rabinovich R, Xu X, Farnham PJ. E2F in vivo binding specificity: comparison of consensus versus nonconsensus binding sites. Genome Res 2008; 18:1763-77; PMID:18836037; http://dx.doi.org/10.1101/gr.080622.108.
-
(2008)
Genome Res
, vol.18
, pp. 1763-1777
-
-
Rabinovich, A.1
Jin, V.X.2
Rabinovich, R.3
Xu, X.4
Farnham, P.J.5
-
38
-
-
33750442923
-
Genome-wide analysis of estrogen receptor binding sites
-
PMID:17013392
-
Carroll JS, Meyer CA, Song J, Li W, Geistlinger TR, Eeckhoute J, et al. Genome-wide analysis of estrogen receptor binding sites. Nat Genet 2006; 38:1289-97; PMID:17013392; http://dx.doi.org/10.1038/ng1901.
-
(2006)
Nat Genet
, vol.38
, pp. 1289-1297
-
-
Carroll, J.S.1
Meyer, C.A.2
Song, J.3
Li, W.4
Geistlinger, T.R.5
Eeckhoute, J.6
-
39
-
-
80052398200
-
Cellular reprogramming by the conjoint action of ERα, FOXA1, and GATA3 to a ligand-inducible growth state
-
PMID:21878914
-
Kong SL, Li G, Loh SL, Sung WK, Liu ET. Cellular reprogramming by the conjoint action of ERα, FOXA1, and GATA3 to a ligand-inducible growth state. Mol Syst Biol 2011; 7:526; PMID:21878914; http://dx.doi.org/10.1038/msb. 2011.59.
-
(2011)
Mol Syst Biol
, vol.7
, pp. 526
-
-
Kong, S.L.1
Li, G.2
Loh, S.L.3
Sung, W.K.4
Liu, E.T.5
-
40
-
-
79960072084
-
AP-2γ regulates oestrogen receptor-mediated long-range chromatin interaction and gene transcription
-
PMID:21572391
-
Tan SK, Lin ZH, Chang CW, Varang V, Chng KR, Pan YF, et al. AP-2γ regulates oestrogen receptor-mediated long-range chromatin interaction and gene transcription. EMBO J 2011; 30:2569-81; PMID:21572391; http://dx.doi.org/10. 1038/emboj.2011.151.
-
(2011)
EMBO J
, vol.30
, pp. 2569-2581
-
-
Tan, S.K.1
Lin, Z.H.2
Chang, C.W.3
Varang, V.4
Chng, K.R.5
Pan, Y.F.6
-
41
-
-
79955027617
-
Co-occupancy by multiple cardiac transcription factors identifies transcriptional enhancers active in heart
-
PMID:21415370
-
He A, Kong SW, Ma Q, Pu WT. Co-occupancy by multiple cardiac transcription factors identifies transcriptional enhancers active in heart. Proc Natl Acad Sci USA 2011; 108:5632-7; PMID:21415370; http://dx.doi.org/10.1073/ pnas.1016959108.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 5632-5637
-
-
He, A.1
Kong, S.W.2
Ma, Q.3
Pu, W.T.4
-
42
-
-
77952567987
-
Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities
-
PMID:20513432
-
Heinz S, Benner C, Spann N, Bertolino E, Lin YC, Laslo P, et al. Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol Cell 2010; 38:576-89; PMID:20513432; http://dx.doi.org/10.1016/j.molcel.2010.05.004.
-
(2010)
Mol Cell
, vol.38
, pp. 576-589
-
-
Heinz, S.1
Benner, C.2
Spann, N.3
Bertolino, E.4
Lin, Y.C.5
Laslo, P.6
-
43
-
-
55749095056
-
PPARgamma and C/EBP factors orchestrate adipocyte biology via adjacent binding on a genome-wide scale
-
PMID:18981473
-
Lefterova MI, Zhang Y, Steger DJ, Schupp M, Schug J, Cristancho A, et al. PPARgamma and C/EBP factors orchestrate adipocyte biology via adjacent binding on a genome-wide scale. Genes Dev 2008; 22:2941-52; PMID:18981473; http://dx.doi.org/10.1101/gad.1709008.
-
(2008)
Genes Dev
, vol.22
, pp. 2941-2952
-
-
Lefterova, M.I.1
Zhang, Y.2
Steger, D.J.3
Schupp, M.4
Schug, J.5
Cristancho, A.6
-
44
-
-
77953763449
-
A global network of transcription factors, involving E2A, EBF1 and Foxo1, that orchestrates B cell fate
-
PMID:20543837
-
Lin YC, Jhunjhunwala S, Benner C, Heinz S, Welinder E, Mansson R, et al. A global network of transcription factors, involving E2A, EBF1 and Foxo1, that orchestrates B cell fate. Nat Immunol 2010; 11:635-43; PMID:20543837; http://dx.doi.org/10.1038/ni.1891.
-
(2010)
Nat Immunol
, vol.11
, pp. 635-643
-
-
Lin, Y.C.1
Jhunjhunwala, S.2
Benner, C.3
Heinz, S.4
Welinder, E.5
Mansson, R.6
-
45
-
-
78751625306
-
Nuclear adaptor Ldb1 regulates a transcriptional program essential for the maintenance of hematopoietic stem cells
-
PMID:21186366
-
Li L, Jothi R, Cui K, Lee JY, Cohen T, Gorivodsky M, et al. Nuclear adaptor Ldb1 regulates a transcriptional program essential for the maintenance of hematopoietic stem cells. Nat Immunol 2011; 12:129-36; PMID:21186366; http://dx.doi.org/10.1038/ni.1978.
-
(2011)
Nat Immunol
, vol.12
, pp. 129-136
-
-
Li, L.1
Jothi, R.2
Cui, K.3
Lee, J.Y.4
Cohen, T.5
Gorivodsky, M.6
-
46
-
-
55749101777
-
Genome-wide profiling of PPARgamma:RXR and RNA polymerase II occupancy reveals temporal activation of distinct metabolic pathways and changes in RXR dimer composition during adipogenesis
-
PMID:18981474
-
Nielsen R, Pedersen TA, Hagenbeek D, Moulos P, Siersbaek R, Megens E, et al. Genome-wide profiling of PPARgamma:RXR and RNA polymerase II occupancy reveals temporal activation of distinct metabolic pathways and changes in RXR dimer composition during adipogenesis. Genes Dev 2008; 22:2953-67; PMID:18981474; http://dx.doi.org/10.1101/gad.501108.
-
(2008)
Genes Dev
, vol.22
, pp. 2953-2967
-
-
Nielsen, R.1
Pedersen, T.A.2
Hagenbeek, D.3
Moulos, P.4
Siersbaek, R.5
Megens, E.6
-
47
-
-
76149089221
-
The genome-wide dynamics of the binding of Ldb1 complexes during erythroid differentiation
-
PMID:20123907
-
Soler E, Andrieu-Soler C, de Boer E, Bryne JC, Thongjuea S, Stadhouders R, et al. The genome-wide dynamics of the binding of Ldb1 complexes during erythroid differentiation. Genes Dev 2010; 24:277-89; PMID:20123907; http://dx.doi.org/10.1101/gad.551810.
-
(2010)
Genes Dev
, vol.24
, pp. 277-289
-
-
Soler, E.1
Andrieu-Soler, C.2
De Boer, E.3
Bryne, J.C.4
Thongjuea, S.5
Stadhouders, R.6
-
48
-
-
79955883317
-
Genome-wide analysis of simultaneous GATA1/2, RUNX1, FLI1, and SCL binding in megakaryocytes identifies hematopoietic regulators
-
PMID:21571218
-
Tijssen MR, Cvejic A, Joshi A, Hannah RL, Ferreira R, Forrai A, et al. Genome-wide analysis of simultaneous GATA1/2, RUNX1, FLI1, and SCL binding in megakaryocytes identifies hematopoietic regulators. Dev Cell 2011; 20:597-609; PMID:21571218; http://dx.doi.org/10.1016/j.devcel.2011.04.008.
-
(2011)
Dev Cell
, vol.20
, pp. 597-609
-
-
Tijssen, M.R.1
Cvejic, A.2
Joshi, A.3
Hannah, R.L.4
Ferreira, R.5
Forrai, A.6
-
49
-
-
78149485097
-
Differentiation-specific histone modifications reveal dynamic chromatin interactions and partners for the intestinal transcription factor CDX2
-
PMID:21074721
-
Verzi MP, Shin H, He HH, Sulahian R, Meyer CA, Montgomery RK, et al. Differentiation-specific histone modifications reveal dynamic chromatin interactions and partners for the intestinal transcription factor CDX2. Dev Cell 2010; 19:713-26; PMID:21074721; http://dx.doi.org/10.1016/j.devcel.2010.10.006.
-
(2010)
Dev Cell
, vol.19
, pp. 713-726
-
-
Verzi, M.P.1
Shin, H.2
He, H.H.3
Sulahian, R.4
Meyer, C.A.5
Montgomery, R.K.6
-
50
-
-
79959198166
-
Reprogramming transcription by distinct classes of enhancers functionally defined by eRNA
-
PMID:21572438
-
Wang D, Garcia-Bassets I, Benner C, Li W, Su X, Zhou Y, et al. Reprogramming transcription by distinct classes of enhancers functionally defined by eRNA. Nature 2011; 474:390-4; PMID:21572438; http://dx.doi.org/10. 1038/nature10006.
-
(2011)
Nature
, vol.474
, pp. 390-394
-
-
Wang, D.1
Garcia-Bassets, I.2
Benner, C.3
Li, W.4
Su, X.5
Zhou, Y.6
-
51
-
-
80155137594
-
Master transcription factors determine cell-type-specific responses to TGF-β signaling
-
PMID:22036565
-
Mullen AC, Orlando DA, Newman JJ, Lovén J, Kumar RM, Bilodeau S, et al. Master transcription factors determine cell-type-specific responses to TGF-β signaling. Cell 2011; 147:565-76; PMID:22036565; http://dx.doi.org/ 10.1016/j.cell.2011.08.050.
-
(2011)
Cell
, vol.147
, pp. 565-576
-
-
Mullen, A.C.1
Orlando, D.A.2
Newman, J.J.3
Lovén, J.4
Kumar, R.M.5
Bilodeau, S.6
-
52
-
-
78650210727
-
Bcl-6 and NF-kappaB cistromes mediate opposing regulation of the innate immune response
-
PMID:21106671
-
Barish GD, Yu RT, Karunasiri M, Ocampo CB, Dixon J, Benner C, et al. Bcl-6 and NF-kappaB cistromes mediate opposing regulation of the innate immune response. Genes Dev 2010; 24:2760-5; PMID:21106671; http://dx.doi.org/10.1101/ gad.1998010.
-
(2010)
Genes Dev
, vol.24
, pp. 2760-2765
-
-
Barish, G.D.1
Yu, R.T.2
Karunasiri, M.3
Ocampo, C.B.4
Dixon, J.5
Benner, C.6
-
53
-
-
67549104319
-
Genomic antagonism between retinoic acid and estrogen signaling in breast cancer
-
PMID:19563758
-
Hua S, Kittler R, White KP. Genomic antagonism between retinoic acid and estrogen signaling in breast cancer. Cell 2009; 137:1259-71; PMID:19563758; http://dx.doi.org/10.1016/j.cell.2009.04.043.
-
(2009)
Cell
, vol.137
, pp. 1259-1271
-
-
Hua, S.1
Kittler, R.2
White, K.P.3
-
54
-
-
33750352462
-
Transcriptional regulatory elements in the human genome
-
PMID:16719718
-
Maston GA, Evans SK, Green MR. Transcriptional regulatory elements in the human genome. Annu Rev Genomics Hum Genet 2006; 7:29-59; PMID:16719718; http://dx.doi.org/10.1146/annurev.genom.7.080505.115623.
-
(2006)
Annu Rev Genomics Hum Genet
, vol.7
, pp. 29-59
-
-
Maston, G.A.1
Evans, S.K.2
Green, M.R.3
-
55
-
-
75949115944
-
Noncooperative interactions between transcription factors and clustered DNA binding sites enable graded transcriptional responses to environmental inputs
-
PMID:20159560
-
Giorgetti L, Siggers T, Tiana G, Caprara G, Notarbartolo S, Corona T, et al. Noncooperative interactions between transcription factors and clustered DNA binding sites enable graded transcriptional responses to environmental inputs. Mol Cell 2010; 37:418-28; PMID:20159560; http://dx.doi.org/10.1016/j.molcel. 2010.01.016.
-
(2010)
Mol Cell
, vol.37
, pp. 418-428
-
-
Giorgetti, L.1
Siggers, T.2
Tiana, G.3
Caprara, G.4
Notarbartolo, S.5
Corona, T.6
-
56
-
-
80051537445
-
Chromatin and transcriptional signatures for Nodal signaling during endoderm formation in hESCs
-
PMID:21741376
-
Kim SW, Yoon SJ, Chuong E, Oyolu C, Wills AE, Gupta R, et al. Chromatin and transcriptional signatures for Nodal signaling during endoderm formation in hESCs. Dev Biol 2011; 357:492-504; PMID:21741376; http://dx.doi.org/10.1016/j. ydbio.2011.06.009.
-
(2011)
Dev Biol
, vol.357
, pp. 492-504
-
-
Kim, S.W.1
Yoon, S.J.2
Chuong, E.3
Oyolu, C.4
Wills, A.E.5
Gupta, R.6
-
57
-
-
70449132583
-
Combinatorial binding predicts spatio-temporal cis-regulatory activity
-
PMID:19890324
-
Zinzen RP, Girardot C, Gagneur J, Braun M, Furlong EE. Combinatorial binding predicts spatio-temporal cis-regulatory activity. Nature 2009; 462:65-70; PMID:19890324; http://dx.doi.org/10.1038/nature08531.
-
(2009)
Nature
, vol.462
, pp. 65-70
-
-
Zinzen, R.P.1
Girardot, C.2
Gagneur, J.3
Braun, M.4
Furlong, E.E.5
-
58
-
-
79961125554
-
Forkhead factors regulate epithelial plasticity: Impact on cancer progression
-
PMID:21685726
-
Feuerborn A, Küffer S, Gröne HJ. Forkhead factors regulate epithelial plasticity: impact on cancer progression. Cell Cycle 2011; 10:2454-60; PMID:21685726; http://dx.doi.org/10.4161/cc.10.15.16306.
-
(2011)
Cell Cycle
, vol.10
, pp. 2454-2460
-
-
Feuerborn, A.1
Küffer, S.2
Gröne, H.J.3
-
59
-
-
80052000538
-
Dynamic exchange at regulatory elements during chromatin remodeling underlies assisted loading mechanism
-
PMID:21835447
-
Voss TC, Schiltz RL, Sung MH, Yen PM, Stamatoyannopoulos JA, Biddie SC, et al. Dynamic exchange at regulatory elements during chromatin remodeling underlies assisted loading mechanism. Cell 2011; 146:544-54; PMID:21835447; http://dx.doi.org/10.1016/j.cell.2011.07.006.
-
(2011)
Cell
, vol.146
, pp. 544-554
-
-
Voss, T.C.1
Schiltz, R.L.2
Sung, M.H.3
Yen, P.M.4
Stamatoyannopoulos, J.A.5
Biddie, S.C.6
-
60
-
-
80455144479
-
Pioneer transcription factors: Establishing competence for gene expression
-
PMID:22056668
-
Zaret KS, Carroll JS. Pioneer transcription factors: establishing competence for gene expression. Genes Dev 2011; 25:2227-41; PMID:22056668; http://dx.doi.org/10.1101/gad.176826.111.
-
(2011)
Genes Dev
, vol.25
, pp. 2227-2241
-
-
Zaret, K.S.1
Carroll, J.S.2
-
61
-
-
68549133583
-
Mapping key features of transcriptional regulatory circuitry in embryonic stem cells
-
PMID:19022761
-
Cole MF, Young RA. Mapping key features of transcriptional regulatory circuitry in embryonic stem cells. Cold Spring Harb Symp Quant Biol 2008; 73:183-93; PMID:19022761; http://dx.doi.org/10.1101/sqb.2008.73.027.
-
(2008)
Cold Spring Harb Symp Quant Biol
, vol.73
, pp. 183-193
-
-
Cole, M.F.1
Young, R.A.2
-
62
-
-
77649299348
-
An atlas of combinatorial transcriptional regulation in mouse and man
-
PMID:20211142
-
Ravasi T, Suzuki H, Cannistraci CV, Katayama S, Bajic VB, Tan K, et al. An atlas of combinatorial transcriptional regulation in mouse and man. Cell 2010; 140:744-52; PMID:20211142; http://dx.doi.org/10.1016/j.cell.2010.01.044.
-
(2010)
Cell
, vol.140
, pp. 744-752
-
-
Ravasi, T.1
Suzuki, H.2
Cannistraci, C.V.3
Katayama, S.4
Bajic, V.B.5
Tan, K.6
-
63
-
-
79959936665
-
The differential disease regulome
-
PMID:21736759
-
Sandve GK, Gundersen S, Rydbeck H, Glad IK, Holden L, Holden M, et al. The differential disease regulome. BMC Genomics 2011; 12:353; PMID:21736759; http://dx.doi.org/10.1186/1471-2164-12-353.
-
(2011)
BMC Genomics
, vol.12
, pp. 353
-
-
Sandve, G.K.1
Gundersen, S.2
Rydbeck, H.3
Glad, I.K.4
Holden, L.5
Holden, M.6
-
64
-
-
76149132685
-
Generic binding sites, generic DNA-binding domains: Where does specific promoter recognition come from?
-
PMID:19762556
-
Georges AB, Benayoun BA, Caburet S, Veitia RA. Generic binding sites, generic DNA-binding domains: where does specific promoter recognition come from? FASEB J 2010; 24:346-56; PMID:19762556; http://dx.doi.org/10.1096/fj.09-142117.
-
(2010)
FASEB J
, vol.24
, pp. 346-356
-
-
Georges, A.B.1
Benayoun, B.A.2
Caburet, S.3
Veitia, R.A.4
-
65
-
-
0142026180
-
Context-dependent transcription: All politics is local
-
PMID:12957376
-
Alvarez M, Rhodes SJ, Bidwell JP. Context-dependent transcription: all politics is local. Gene 2003; 313:43-57; PMID:12957376; http://dx.doi.org/10. 1016/S0378-1119(03)00627-9.
-
(2003)
Gene
, vol.313
, pp. 43-57
-
-
Alvarez, M.1
Rhodes, S.J.2
Bidwell, J.P.3
-
66
-
-
79958033757
-
Genome-wide approaches reveal functional interleukin-4-inducible STAT6 binding to the vascular cell adhesion molecule 1 promoter
-
PMID:21464207
-
Tozawa H, Kanki Y, Suehiro J, Tsutsumi S, Kohro T, Wada Y, et al. Genome-wide approaches reveal functional interleukin-4-inducible STAT6 binding to the vascular cell adhesion molecule 1 promoter. Mol Cell Biol 2011; 31:2196-209; PMID:21464207; http://dx.doi.org/10.1128/MCB.01430-10.
-
(2011)
Mol Cell Biol
, vol.31
, pp. 2196-2209
-
-
Tozawa, H.1
Kanki, Y.2
Suehiro, J.3
Tsutsumi, S.4
Kohro, T.5
Wada, Y.6
-
67
-
-
79960050587
-
Targeting androgen receptor in estrogen receptor-negative breast cancer
-
PMID:21741601
-
Ni M, Chen Y, Lim E, Wimberly H, Bailey ST, Imai Y, et al. Targeting androgen receptor in estrogen receptor-negative breast cancer. Cancer Cell 2011; 20:119-31; PMID:21741601; http://dx.doi.org/10.1016/j.ccr.2011.05.026.
-
(2011)
Cancer Cell
, vol.20
, pp. 119-131
-
-
Ni, M.1
Chen, Y.2
Lim, E.3
Wimberly, H.4
Bailey, S.T.5
Imai, Y.6
-
68
-
-
37249009271
-
Motif module map reveals enforcement of aging by continual NF-kappaB activity
-
PMID:18055696
-
Adler AS, Sinha S, Kawahara TL, Zhang JY, Segal E, Chang HY. Motif module map reveals enforcement of aging by continual NF-kappaB activity. Genes Dev 2007; 21:3244-57; PMID:18055696; http://dx.doi.org/10.1101/gad.1588507.
-
(2007)
Genes Dev
, vol.21
, pp. 3244-3257
-
-
Adler, A.S.1
Sinha, S.2
Kawahara, T.L.3
Zhang, J.Y.4
Segal, E.5
Chang, H.Y.6
-
69
-
-
41849136515
-
Reversal of aging by NFkappaB blockade
-
PMID:18256548
-
Adler AS, Kawahara TL, Segal E, Chang HY. Reversal of aging by NFkappaB blockade. Cell Cycle 2008; 7:556-9; PMID:18256548; http://dx.doi.org/10.4161/cc. 7.5.5490.
-
(2008)
Cell Cycle
, vol.7
, pp. 556-559
-
-
Adler, A.S.1
Kawahara, T.L.2
Segal, E.3
Chang, H.Y.4
-
70
-
-
68749084845
-
Integrated expression profiling and ChIP-seq analyses of the growth inhibition response program of the androgen receptor
-
PMID:19668381
-
Lin B, Wang J, Hong X, Yan X, Hwang D, Cho JH, et al. Integrated expression profiling and ChIP-seq analyses of the growth inhibition response program of the androgen receptor. PLoS One 2009; 4:e6589; PMID:19668381; http://dx.doi.org/10.1371/journal.pone.0006589.
-
(2009)
PLoS One
, vol.4
-
-
Lin, B.1
Wang, J.2
Hong, X.3
Yan, X.4
Hwang, D.5
Cho, J.H.6
-
71
-
-
79952184341
-
Chromatin accessibility predetermines glucocorticoid receptor binding patterns
-
PMID:21258342
-
John S, Sabo PJ, Thurman RE, Sung MH, Biddie SC, Johnson TA, et al. Chromatin accessibility predetermines glucocorticoid receptor binding patterns. Nat Genet 2011; 43:264-8; PMID:21258342; http://dx.doi.org/10.1038/ng.759.
-
(2011)
Nat Genet
, vol.43
, pp. 264-268
-
-
John, S.1
Sabo, P.J.2
Thurman, R.E.3
Sung, M.H.4
Biddie, S.C.5
Johnson, T.A.6
-
72
-
-
77950605769
-
Genome-wide tissue-specific farnesoid X receptor binding in mouse liver and intestine
-
PMID:20091679
-
Thomas AM, Hart SN, Kong B, Fang J, Zhong XB, Guo GL. Genome-wide tissue-specific farnesoid X receptor binding in mouse liver and intestine. Hepatology 2010; 51:1410-9; PMID:20091679; http://dx.doi.org/10.1002/hep.23450.
-
(2010)
Hepatology
, vol.51
, pp. 1410-1419
-
-
Thomas, A.M.1
Hart, S.N.2
Kong, B.3
Fang, J.4
Zhong, X.B.5
Guo, G.L.6
-
73
-
-
79960745768
-
ChIP-seq defined genome-wide map of TGFâ/SMAD4 targets: Implications with clinical outcome of ovarian cancer
-
PMID:21799915
-
Kennedy BA, Deatherage DE, Gu F, Tang B, Chan MW, Nephew KP, et al. ChIP-seq defined genome-wide map of TGFâ/SMAD4 targets: implications with clinical outcome of ovarian cancer. PLoS One 2011; 6:e22606; PMID:21799915; http://dx.doi.org/10.1371/journal.pone.0022606.
-
(2011)
PLoS One
, vol.6
-
-
Kennedy, B.A.1
Deatherage, D.E.2
Gu, F.3
Tang, B.4
Chan, M.W.5
Nephew, K.P.6
-
74
-
-
0037194790
-
Coordination of circadian timing in mammals
-
PMID:12198538
-
Reppert SM, Weaver DR. Coordination of circadian timing in mammals. Nature 2002; 418:935-41; PMID:12198538; http://dx.doi.org/10.1038/nature00965.
-
(2002)
Nature
, vol.418
, pp. 935-941
-
-
Reppert, S.M.1
Weaver, D.R.2
-
75
-
-
77950634721
-
Cell-specific determinants of peroxisome proliferator-activated receptor gamma function in adipocytes and macrophages
-
PMID:20176806
-
Lefterova MI, Steger DJ, Zhuo D, Qatanani M, Mullican SE, Tuteja G, et al. Cell-specific determinants of peroxisome proliferator-activated receptor gamma function in adipocytes and macrophages. Mol Cell Biol 2010; 30:2078-89; PMID:20176806; http://dx.doi.org/10.1128/MCB.01651-09.
-
(2010)
Mol Cell Biol
, vol.30
, pp. 2078-2089
-
-
Lefterova, M.I.1
Steger, D.J.2
Zhuo, D.3
Qatanani, M.4
Mullican, S.E.5
Tuteja, G.6
-
76
-
-
61849119137
-
Cell-type selective chromatin remodeling defines the active subset of FOXA1-bound enhancers
-
PMID:19129543
-
Eeckhoute J, Lupien M, Meyer CA, Verzi MP, Shivdasani RA, Liu XS, et al. Cell-type selective chromatin remodeling defines the active subset of FOXA1-bound enhancers. Genome Res 2009; 19:372-80; PMID:19129543; http://dx.doi.org/10.1101/gr.084582.108.
-
(2009)
Genome Res
, vol.19
, pp. 372-380
-
-
Eeckhoute, J.1
Lupien, M.2
Meyer, C.A.3
Verzi, M.P.4
Shivdasani, R.A.5
Liu, X.S.6
-
77
-
-
84857710083
-
Roles of lineage-determining transcription factors in establishing open chromatin: Lessons from high-throughput studies
-
PMID:21744305
-
Heinz S, Glass CK. Roles of lineage-determining transcription factors in establishing open chromatin: lessons from high-throughput studies. Curr Top Microbiol Immunol 2012; 356:1-15; PMID:21744305; http://dx.doi.org/10.1007/82- 2011-142.
-
(2012)
Curr Top Microbiol Immunol
, vol.356
, pp. 1-15
-
-
Heinz, S.1
Glass, C.K.2
-
78
-
-
84859157183
-
Dynamic transformations of genome-wide epigenetic marking and transcriptional control establish T cell identity
-
PMID:22500808
-
Zhang JA, Mortazavi A, Williams BA, Wold BJ, Rothenberg EV. Dynamic transformations of genome-wide epigenetic marking and transcriptional control establish T cell identity. Cell 2012; 149:467-82; PMID:22500808; http://dx.doi.org/10.1016/j.cell.2012.01.056.
-
(2012)
Cell
, vol.149
, pp. 467-482
-
-
Zhang, J.A.1
Mortazavi, A.2
Williams, B.A.3
Wold, B.J.4
Rothenberg, E.V.5
-
79
-
-
67650758019
-
Androgen receptor regulates a distinct transcription program in androgen-independent prostate cancer
-
PMID:19632176
-
Wang Q, Li W, Zhang Y, Yuan X, Xu K, Yu J, et al. Androgen receptor regulates a distinct transcription program in androgen-independent prostate cancer. Cell 2009; 138:245-56; PMID:19632176; http://dx.doi.org/10.1016/j.cell. 2009.04.056.
-
(2009)
Cell
, vol.138
, pp. 245-256
-
-
Wang, Q.1
Li, W.2
Zhang, Y.3
Yuan, X.4
Xu, K.5
Yu, J.6
-
80
-
-
80053610846
-
Dual role of FoxA1 in androgen receptor binding to chromatin, androgen signalling and prostate cancer
-
PMID:21915096
-
Sahu B, Laakso M, Ovaska K, Mirtti T, Lundin J, Rannikko A, et al. Dual role of FoxA1 in androgen receptor binding to chromatin, androgen signalling and prostate cancer. EMBO J 2011; 30:3962-76; PMID:21915096; http://dx.doi.org/10. 1038/emboj.2011.328.
-
(2011)
EMBO J
, vol.30
, pp. 3962-3976
-
-
Sahu, B.1
Laakso, M.2
Ovaska, K.3
Mirtti, T.4
Lundin, J.5
Rannikko, A.6
-
81
-
-
84055190692
-
Distinct p53 genomic binding patterns in normal and cancer-derived human cells
-
PMID:22127205
-
Botcheva K, McCorkle SR, McCombie WR, Dunn JJ, Anderson CW. Distinct p53 genomic binding patterns in normal and cancer-derived human cells. Cell Cycle 2011; 10:4237-49; PMID:22127205; http://dx.doi.org/10.4161/cc.10.24.18383.
-
(2011)
Cell Cycle
, vol.10
, pp. 4237-4249
-
-
Botcheva, K.1
McCorkle, S.R.2
McCombie, W.R.3
Dunn, J.J.4
Anderson, C.W.5
-
82
-
-
50149109481
-
Epigenetic reprogramming by adenovirus e1a
-
PMID:18719284
-
Ferrari R, Pellegrini M, Horwitz GA, Xie W, Berk AJ, Kurdistani SK. Epigenetic reprogramming by adenovirus e1a. Science 2008; 321:1086-8; PMID:18719284; http://dx.doi.org/10.1126/science.1155546.
-
(2008)
Science
, vol.321
, pp. 1086-1088
-
-
Ferrari, R.1
Pellegrini, M.2
Horwitz, G.A.3
Xie, W.4
Berk, A.J.5
Kurdistani, S.K.6
-
83
-
-
77957885770
-
Transcription factor binding variation in the evolution of gene regulation
-
PMID:20864205
-
Dowell RD. Transcription factor binding variation in the evolution of gene regulation. Trends Genet 2010; 26:468-75; PMID:20864205; http://dx.doi.org/10.1016/j.tig.2010.08.005.
-
(2010)
Trends Genet
, vol.26
, pp. 468-475
-
-
Dowell, R.D.1
-
84
-
-
71749100795
-
Evolution of transcriptional control in mammals
-
PMID:19913406
-
Wilson MD, Odom DT. Evolution of transcriptional control in mammals. Curr Opin Genet Dev 2009; 19:579-85; PMID:19913406; http://dx.doi.org/10.1016/j.gde. 2009.10.003.
-
(2009)
Curr Opin Genet Dev
, vol.19
, pp. 579-585
-
-
Wilson, M.D.1
Odom, D.T.2
-
85
-
-
33645381936
-
The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells
-
PMID:16518401
-
Loh YH, Wu Q, Chew JL, Vega VB, Zhang W, Chen X, et al. The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells. Nat Genet 2006; 38:431-40; PMID:16518401; http://dx.doi.org/10.1038/ ng1760.
-
(2006)
Nat Genet
, vol.38
, pp. 431-440
-
-
Loh, Y.H.1
Wu, Q.2
Chew, J.L.3
Vega, V.B.4
Zhang, W.5
Chen, X.6
-
86
-
-
77954100084
-
Transposable elements have rewired the core regulatory network of human embryonic stem cells
-
PMID:20526341
-
Kunarso G, Chia NY, Jeyakani J, Hwang C, Lu X, Chan YS, et al. Transposable elements have rewired the core regulatory network of human embryonic stem cells. Nat Genet 2010; 42:631-4; PMID:20526341; http://dx.doi.org/10.1038/ng.600.
-
(2010)
Nat Genet
, vol.42
, pp. 631-634
-
-
Kunarso, G.1
Chia, N.Y.2
Jeyakani, J.3
Hwang, C.4
Lu, X.5
Chan, Y.S.6
-
87
-
-
34249818182
-
Tissue-specific transcriptional regulation has diverged significantly between human and mouse
-
PMID:17529977
-
Odom DT, Dowell RD, Jacobsen ES, Gordon W, Danford TW, MacIsaac KD, et al. Tissue-specific transcriptional regulation has diverged significantly between human and mouse. Nat Genet 2007; 39:730-2; PMID:17529977; http://dx.doi.org/10.1038/ng2047.
-
(2007)
Nat Genet
, vol.39
, pp. 730-732
-
-
Odom, D.T.1
Dowell, R.D.2
Jacobsen, E.S.3
Gordon, W.4
Danford, T.W.5
MacIsaac, K.D.6
-
88
-
-
79953756730
-
Species-specific strategies underlying conserved functions of metabolic transcription factors
-
PMID:21292830
-
Soccio RE, Tuteja G, Everett LJ, Li Z, Lazar MA, Kaestner KH. Species-specific strategies underlying conserved functions of metabolic transcription factors. Mol Endocrinol 2011; 25:694-706; PMID:21292830; http://dx.doi.org/10.1210/me.2010-0454.
-
(2011)
Mol Endocrinol
, vol.25
, pp. 694-706
-
-
Soccio, R.E.1
Tuteja, G.2
Everett, L.J.3
Li, Z.4
Lazar, M.A.5
Kaestner, K.H.6
-
89
-
-
77953062527
-
Five-vertebrate ChIP-seq reveals the evolutionary dynamics of transcription factor binding
-
PMID:20378774
-
Schmidt D, Wilson MD, Ballester B, Schwalie PC, Brown GD, Marshall A, et al. Five-vertebrate ChIP-seq reveals the evolutionary dynamics of transcription factor binding. Science 2010; 328:1036-40; PMID:20378774; http://dx.doi.org/10. 1126/science.1186176.
-
(2010)
Science
, vol.328
, pp. 1036-1040
-
-
Schmidt, D.1
Wilson, M.D.2
Ballester, B.3
Schwalie, P.C.4
Brown, G.D.5
Marshall, A.6
-
90
-
-
42349088542
-
Cell cycle genes are the evolutionarily conserved targets of the E2F4 transcription factor
-
PMID:17957245
-
Conboy CM, Spyrou C, Thorne NP, Wade EJ, Barbosa-Morais NL, Wilson MD, et al. Cell cycle genes are the evolutionarily conserved targets of the E2F4 transcription factor. PLoS One 2007; 2:e1061; PMID:17957245; http://dx.doi.org/10.1371/journal.pone.0001061.
-
(2007)
PLoS One
, vol.2
-
-
Conboy, C.M.1
Spyrou, C.2
Thorne, N.P.3
Wade, E.J.4
Barbosa-Morais, N.L.5
Wilson, M.D.6
-
91
-
-
54249099196
-
Species-specific transcription in mice carrying human chromosome 21
-
PMID:18787134
-
Wilson MD, Barbosa-Morais NL, Schmidt D, Conboy CM, Vanes L, Tybulewicz VL, et al. Species-specific transcription in mice carrying human chromosome 21. Science 2008; 322:434-8; PMID:18787134; http://dx.doi.org/10.1126/science. 1160930.
-
(2008)
Science
, vol.322
, pp. 434-438
-
-
Wilson, M.D.1
Barbosa-Morais, N.L.2
Schmidt, D.3
Conboy, C.M.4
Vanes, L.5
Tybulewicz, V.L.6
-
92
-
-
65349162170
-
Conservation of core gene expression in vertebrate tissues
-
PMID:19371447
-
Chan ET, Quon GT, Chua G, Babak T, Trochesset M, Zirngibl RA, et al. Conservation of core gene expression in vertebrate tissues. J Biol 2009; 8:33; PMID:19371447; http://dx.doi.org/10.1186/jbiol130.
-
(2009)
J Biol
, vol.8
, pp. 33
-
-
Chan, E.T.1
Quon, G.T.2
Chua, G.3
Babak, T.4
Trochesset, M.5
Zirngibl, R.A.6
-
93
-
-
33144462258
-
Structural and functional properties of genes involved in human cancer
-
PMID:16405732
-
Furney SJ, Higgins DG, Ouzounis CA, López-Bigas N. Structural and functional properties of genes involved in human cancer. BMC Genomics 2006; 7:3; PMID:16405732; http://dx.doi.org/10.1186/1471-2164-7-3.
-
(2006)
BMC Genomics
, vol.7
, pp. 3
-
-
Furney, S.J.1
Higgins, D.G.2
Ouzounis, C.A.3
López-Bigas, N.4
-
94
-
-
0034056133
-
Online Mendelian Inheritance in Man (OMIM) as a knowledgebase for human developmental disorders
-
PMID:10845565
-
Boyadjiev SA, Jabs EW. Online Mendelian Inheritance in Man (OMIM) as a knowledgebase for human developmental disorders. Clin Genet 2000; 57:253-66; PMID:10845565; http://dx.doi.org/10.1034/j.1399-0004.2000.570403.x.
-
(2000)
Clin Genet
, vol.57
, pp. 253-266
-
-
Boyadjiev, S.A.1
Jabs, E.W.2
-
95
-
-
78649725166
-
Mammalian circadian clock and metabolism - The epigenetic link
-
PMID:21048160
-
Bellet MM, Sassone-Corsi P. Mammalian circadian clock and metabolism - the epigenetic link. J Cell Sci 2010; 123:3837-48; PMID:21048160; http://dx.doi.org/10.1242/jcs.051649.
-
(2010)
J Cell Sci
, vol.123
, pp. 3837-3848
-
-
Bellet, M.M.1
Sassone-Corsi, P.2
-
96
-
-
79551534130
-
Crosstalk between components of circadian and metabolic cycles in mammals
-
PMID:21284980
-
Asher G, Schibler U. Crosstalk between components of circadian and metabolic cycles in mammals. Cell Metab 2011; 13:125-37; PMID:21284980; http://dx.doi.org/10.1016/j.cmet.2011.01.006.
-
(2011)
Cell Metab
, vol.13
, pp. 125-137
-
-
Asher, G.1
Schibler, U.2
-
97
-
-
77955438266
-
Mutations in the circadian gene CLOCK in colorectal cancer
-
PMID:20551151
-
Alhopuro P, Björklund M, Sammalkorpi H, Turunen M, Tuupanen S, Biström M, et al. Mutations in the circadian gene CLOCK in colorectal cancer. Mol Cancer Res 2010; 8:952-60; PMID:20551151; http://dx.doi.org/10.1158/ 1541-7786.MCR-10-0086.
-
(2010)
Mol Cancer Res
, vol.8
, pp. 952-960
-
-
Alhopuro, P.1
Björklund, M.2
Sammalkorpi, H.3
Turunen, M.4
Tuupanen, S.5
Biström, M.6
-
98
-
-
65349141868
-
Cell "circadian" cycle: New role for mammalian core clock genes
-
PMID:19221497
-
Borgs L, Beukelaers P, Vandenbosch R, Belachew S, Nguyen L, Malgrange B. Cell "circadian" cycle: new role for mammalian core clock genes. Cell Cycle 2009; 8:832-7; PMID:19221497; http://dx.doi.org/10.4161/cc.8.6.7869.
-
(2009)
Cell Cycle
, vol.8
, pp. 832-837
-
-
Borgs, L.1
Beukelaers, P.2
Vandenbosch, R.3
Belachew, S.4
Nguyen, L.5
Malgrange, B.6
-
99
-
-
34548089696
-
Unexpected paracrine action of prostate cancer cells harboring a new class of androgen receptor mutation - A new paradigm for cooperation among prostate tumor cells
-
PMID:17534890
-
Lapouge G, Erdmann E, Marcias G, Jagla M, Monge A, Kessler P, et al. Unexpected paracrine action of prostate cancer cells harboring a new class of androgen receptor mutation - a new paradigm for cooperation among prostate tumor cells. Int J Cancer 2007; 121:1238-44; PMID:17534890; http://dx.doi.org/10. 1002/ijc.22830.
-
(2007)
Int J Cancer
, vol.121
, pp. 1238-1244
-
-
Lapouge, G.1
Erdmann, E.2
Marcias, G.3
Jagla, M.4
Monge, A.5
Kessler, P.6
-
100
-
-
84861615355
-
AR-Q640X, a model to study the effects of constitutively active C-terminally truncated AR variants in prostate cancer cells
-
PMID:22362413
-
Streicher W, Zengerling F, Laschak M, Weidemann W, Höpfner M, Schrader AJ, et al. AR-Q640X, a model to study the effects of constitutively active C-terminally truncated AR variants in prostate cancer cells. World J Urol 2012; 30:333-9; PMID:22362413; http://dx.doi.org/10.1007/s00345-012-0842-0.
-
(2012)
World J Urol
, vol.30
, pp. 333-339
-
-
Streicher, W.1
Zengerling, F.2
Laschak, M.3
Weidemann, W.4
Höpfner, M.5
Schrader, A.J.6
-
101
-
-
65549168746
-
A novel androgen receptor splice variant is upregulated during prostate cancer progression and promotes androgen depletion-resistant growth
-
PMID:19244107
-
Guo Z, Yang X, Sun F, Jiang R, Linn DE, Chen H, et al. A novel androgen receptor splice variant is upregulated during prostate cancer progression and promotes androgen depletion-resistant growth. Cancer Res 2009; 69:2305-13; PMID:19244107; http://dx.doi.org/10.1158/0008-5472.CAN-08-3795.
-
(2009)
Cancer Res
, vol.69
, pp. 2305-2313
-
-
Guo, Z.1
Yang, X.2
Sun, F.3
Jiang, R.4
Linn, D.E.5
Chen, H.6
-
102
-
-
35148833549
-
Evidence for calpain-mediated androgen receptor cleavage as a mechanism for androgen independence
-
PMID:17909000
-
Libertini SJ, Tepper CG, Rodriguez V, Asmuth DM, Kung HJ, Mudryj M. Evidence for calpain-mediated androgen receptor cleavage as a mechanism for androgen independence. Cancer Res 2007; 67:9001-5; PMID:17909000; http://dx.doi.org/10.1158/0008-5472.CAN-07-1072.
-
(2007)
Cancer Res
, vol.67
, pp. 9001-9005
-
-
Libertini, S.J.1
Tepper, C.G.2
Rodriguez, V.3
Asmuth, D.M.4
Kung, H.J.5
Mudryj, M.6
-
103
-
-
76249101323
-
PML-RARalpha/RXR Alters the Epigenetic Landscape in Acute Promyelocytic Leukemia
-
PMID:20159609
-
Martens JH, Brinkman AB, Simmer F, Francoijs KJ, Nebbioso A, Ferrara F, et al. PML-RARalpha/RXR Alters the Epigenetic Landscape in Acute Promyelocytic Leukemia. Cancer Cell 2010; 17:173-85; PMID:20159609; http://dx.doi.org/10.1016/ j.ccr.2009.12.042.
-
(2010)
Cancer Cell
, vol.17
, pp. 173-185
-
-
Martens, J.H.1
Brinkman, A.B.2
Simmer, F.3
Francoijs, K.J.4
Nebbioso, A.5
Ferrara, F.6
-
104
-
-
76249120854
-
PML/RARalpha targets promoter regions containing PU.1 consensus and RARE half sites in acute promyelocytic leukemia
-
PMID:20159610
-
Wang K, Wang P, Shi J, Zhu X, He M, Jia X, et al. PML/RARalpha targets promoter regions containing PU.1 consensus and RARE half sites in acute promyelocytic leukemia. Cancer Cell 2010; 17:186-97; PMID:20159610; http://dx.doi.org/10.1016/j.ccr.2009.12.045.
-
(2010)
Cancer Cell
, vol.17
, pp. 186-197
-
-
Wang, K.1
Wang, P.2
Shi, J.3
Zhu, X.4
He, M.5
Jia, X.6
-
105
-
-
79951681879
-
Genome-wide functions of PML-RARα in acute promyelocytic leukaemia
-
PMID:21245861
-
Saeed S, Logie C, Stunnenberg HG, Martens JH. Genome-wide functions of PML-RARα in acute promyelocytic leukaemia. Br J Cancer 2011; 104:554-8; PMID:21245861; http://dx.doi.org/10.1038/sj.bjc.6606095.
-
(2011)
Br J Cancer
, vol.104
, pp. 554-558
-
-
Saeed, S.1
Logie, C.2
Stunnenberg, H.G.3
Martens, J.H.4
-
106
-
-
84863011366
-
Tumor-specific retargeting of an oncogenic transcription factor chimera results in dysregulation of chromatin and transcription
-
PMID:22086061
-
Patel M, Simon JM, Iglesia MD, Wu SB, McFadden AW, Lieb JD, et al. Tumor-specific retargeting of an oncogenic transcription factor chimera results in dysregulation of chromatin and transcription. Genome Res 2012; 22:259-70; PMID:22086061; http://dx.doi.org/10.1101/gr.125666.111.
-
(2012)
Genome Res
, vol.22
, pp. 259-270
-
-
Patel, M.1
Simon, J.M.2
Iglesia, M.D.3
Wu, S.B.4
McFadden, A.W.5
Lieb, J.D.6
-
107
-
-
77958562799
-
A PPARα promoter variant impairs ERR-dependent transactivation and decreases mortality after acute coronary ischemia in patients with diabetes
-
PMID:20838448
-
Cresci S, Huss JM, Beitelshees AL, Jones PG, Minton MR, Dorn GW, et al. A PPARα promoter variant impairs ERR-dependent transactivation and decreases mortality after acute coronary ischemia in patients with diabetes. PLoS One 2010; 5:e12584; PMID:20838448; http://dx.doi.org/10.1371/journal.pone. 0012584.
-
(2010)
PLoS One
, vol.5
-
-
Cresci, S.1
Huss, J.M.2
Beitelshees, A.L.3
Jones, P.G.4
Minton, M.R.5
Dorn, G.W.6
-
108
-
-
84857111200
-
DNase?I sensitivity QTLs are a major determinant of human expression variation
-
PMID:22307276
-
Degner JF, Pai AA, Pique-Regi R, Veyrieras JB, Gaffney DJ, Pickrell JK, et al. DNase?I sensitivity QTLs are a major determinant of human expression variation. Nature 2012; 482:390-4; PMID:22307276; http://dx.doi.org/10.1038/ nature10808.
-
(2012)
Nature
, vol.482
, pp. 390-394
-
-
Degner, J.F.1
Pai, A.A.2
Pique-Regi, R.3
Veyrieras, J.B.4
Gaffney, D.J.5
Pickrell, J.K.6
-
109
-
-
34548809118
-
Expression of SMARCB1 modulates steroid sensitivity in human lymphoblastoid cells: Identification of a promoter SNP that alters PARP1 binding and SMARCB1 expression
-
PMID:17616514
-
Pottier N, Cheok MH, Yang W, Assem M, Tracey L, Obenauer JC, et al. Expression of SMARCB1 modulates steroid sensitivity in human lymphoblastoid cells: identification of a promoter SNP that alters PARP1 binding and SMARCB1 expression. Hum Mol Genet 2007; 16:2261-71; PMID:17616514; http://dx.doi.org/10. 1093/hmg/ddm178.
-
(2007)
Hum Mol Genet
, vol.16
, pp. 2261-2271
-
-
Pottier, N.1
Cheok, M.H.2
Yang, W.3
Assem, M.4
Tracey, L.5
Obenauer, J.C.6
-
110
-
-
80053589769
-
Identification of cis-regulatory sequence variations in individual genome sequences
-
PMID:21989199
-
Worsley-Hunt R, Bernard V, Wasserman WW. Identification of cis-regulatory sequence variations in individual genome sequences. Genome Med 2011; 3:65; PMID:21989199; http://dx.doi.org/10.1186/gm281.
-
(2011)
Genome Med
, vol.3
, pp. 65
-
-
Worsley-Hunt, R.1
Bernard, V.2
Wasserman, W.W.3
-
111
-
-
77950833803
-
Variation in transcription factor binding among humans
-
PMID:20299548
-
Kasowski M, Grubert F, Heffelfinger C, Hariharan M, Asabere A, Waszak SM, et al. Variation in transcription factor binding among humans. Science 2010; 328:232-5; PMID:20299548; http://dx.doi.org/10.1126/science.1183621.
-
(2010)
Science
, vol.328
, pp. 232-235
-
-
Kasowski, M.1
Grubert, F.2
Heffelfinger, C.3
Hariharan, M.4
Asabere, A.5
Waszak, S.M.6
-
112
-
-
77950854479
-
Heritable individual-specific and allele-specific chromatin signatures in humans
-
PMID:20299549
-
McDaniell R, Lee BK, Song L, Liu Z, Boyle AP, Erdos MR, et al. Heritable individual-specific and allele-specific chromatin signatures in humans. Science 2010; 328:235-9; PMID:20299549; http://dx.doi.org/10.1126/science.1184655.
-
(2010)
Science
, vol.328
, pp. 235-239
-
-
McDaniell, R.1
Lee, B.K.2
Song, L.3
Liu, Z.4
Boyle, A.P.5
Erdos, M.R.6
-
113
-
-
80052223272
-
An alternative splicing switch regulates embryonic stem cell pluripotency and reprogramming
-
PMID:21924763
-
Gabut M, Samavarchi-Tehrani P, Wang X, Slobodeniuc V, O'Hanlon D, Sung HK, et al. An alternative splicing switch regulates embryonic stem cell pluripotency and reprogramming. Cell 2011; 147:132-46; PMID:21924763; http://dx.doi.org/10.1016/j.cell.2011.08.023.
-
(2011)
Cell
, vol.147
, pp. 132-146
-
-
Gabut, M.1
Samavarchi-Tehrani, P.2
Wang, X.3
Slobodeniuc, V.4
O'Hanlon, D.5
Sung, H.K.6
-
114
-
-
24644519490
-
The transcriptional landscape of the mammalian genome
-
FANTOM Consortium; RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group). PMID:16141072
-
Carninci P, Kasukawa T, Katayama S, Gough J, Frith MC, Maeda N, et al. FANTOM Consortium; RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group). The transcriptional landscape of the mammalian genome. Science 2005; 309:1559-63; PMID:16141072; http://dx.doi.org/ 10.1126/science.1112014.
-
(2005)
Science
, vol.309
, pp. 1559-1563
-
-
Carninci, P.1
Kasukawa, T.2
Katayama, S.3
Gough, J.4
Frith, M.C.5
Maeda, N.6
-
115
-
-
34250305146
-
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
-
ENCODE Project Consortium; NISC Comparative Sequencing Program; Baylor College of Medicine Human Genome Sequencing Center; Washington University Genome Sequencing Center; Broad Institute; Children's Hospital Oakland Research Institute. PMID:17571346
-
Birney E, Stamatoyannopoulos JA, Dutta A, GuigóR, Gingeras TR, Margulies EH, et al. ENCODE Project Consortium; NISC Comparative Sequencing Program; Baylor College of Medicine Human Genome Sequencing Center; Washington University Genome Sequencing Center; Broad Institute; Children's Hospital Oakland Research Institute. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature 2007; 447:799-816; PMID:17571346; http://dx.doi.org/10.1038/nature05874.
-
(2007)
Nature
, vol.447
, pp. 799-816
-
-
Birney, E.1
Stamatoyannopoulos, J.A.2
Dutta, A.3
Guigó, R.4
Gingeras, T.R.5
Margulies, E.H.6
-
116
-
-
19944376457
-
Global identification of human transcribed sequences with genome tiling arrays
-
PMID:15539566
-
Bertone P, Stolc V, Royce TE, Rozowsky JS, Urban AE, Zhu X, et al. Global identification of human transcribed sequences with genome tiling arrays. Science 2004; 306:2242-6; PMID:15539566; http://dx.doi.org/10.1126/science. 1103388.
-
(2004)
Science
, vol.306
, pp. 2242-2246
-
-
Bertone, P.1
Stolc, V.2
Royce, T.E.3
Rozowsky, J.S.4
Urban, A.E.5
Zhu, X.6
-
117
-
-
34249088350
-
Genome-wide transcription and the implications for genomic organization
-
PMID:17486121
-
Kapranov P, Willingham AT, Gingeras TR. Genome-wide transcription and the implications for genomic organization. Nat Rev Genet 2007; 8:413-23; PMID:17486121; http://dx.doi.org/10.1038/nrg2083.
-
(2007)
Nat Rev Genet
, vol.8
, pp. 413-423
-
-
Kapranov, P.1
Willingham, A.T.2
Gingeras, T.R.3
-
118
-
-
80053045739
-
Molecular mechanisms of long noncoding RNAs
-
PMID:21925379
-
Wang KC, Chang HY. Molecular mechanisms of long noncoding RNAs. Mol Cell 2011; 43:904-14; PMID:21925379; http://dx.doi.org/10.1016/j.molcel.2011.08.018.
-
(2011)
Mol Cell
, vol.43
, pp. 904-914
-
-
Wang, K.C.1
Chang, H.Y.2
-
119
-
-
34250729138
-
Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs
-
PMID:17604720
-
Rinn JL, Kertesz M, Wang JK, Squazzo SL, Xu X, Brugmann SA, et al. Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs. Cell 2007; 129:1311-23; PMID:17604720; http://dx.doi.org/10. 1016/j.cell.2007.05.022.
-
(2007)
Cell
, vol.129
, pp. 1311-1323
-
-
Rinn, J.L.1
Kertesz, M.2
Wang, J.K.3
Squazzo, S.L.4
Xu, X.5
Brugmann, S.A.6
-
120
-
-
77954572735
-
Long noncoding RNA as modular scaffold of histone modification complexes
-
PMID:20616235
-
Tsai MC, Manor O, Wan Y, Mosammaparast N, Wang JK, Lan F, et al. Long noncoding RNA as modular scaffold of histone modification complexes. Science 2010; 329:689-93; PMID:20616235; http://dx.doi.org/10.1126/science.1192002.
-
(2010)
Science
, vol.329
, pp. 689-693
-
-
Tsai, M.C.1
Manor, O.2
Wan, Y.3
Mosammaparast, N.4
Wang, J.K.5
Lan, F.6
-
121
-
-
84857066786
-
Modular regulatory principles of large non-coding RNAs
-
PMID:22337053
-
Guttman M, Rinn JL. Modular regulatory principles of large non-coding RNAs. Nature 2012; 482:339-46; PMID:22337053; http://dx.doi.org/10.1038/ nature10887.
-
(2012)
Nature
, vol.482
, pp. 339-346
-
-
Guttman, M.1
Rinn, J.L.2
-
122
-
-
33748093767
-
Linking oncogenic pathways with therapeutic opportunities
-
PMID:16915294
-
Bild AH, Potti A, Nevins JR. Linking oncogenic pathways with therapeutic opportunities. Nat Rev Cancer 2006; 6:735-41; PMID:16915294; http://dx.doi.org/10.1038/nrc1976.
-
(2006)
Nat Rev Cancer
, vol.6
, pp. 735-741
-
-
Bild, A.H.1
Potti, A.2
Nevins, J.R.3
-
123
-
-
77950262538
-
Nucleosome dynamics define transcriptional enhancers
-
PMID:20208536
-
He HH, Meyer CA, Shin H, Bailey ST, Wei G, Wang Q, et al. Nucleosome dynamics define transcriptional enhancers. Nat Genet 2010; 42:343-7; PMID:20208536; http://dx.doi.org/10.1038/ng.545.
-
(2010)
Nat Genet
, vol.42
, pp. 343-347
-
-
He, H.H.1
Meyer, C.A.2
Shin, H.3
Bailey, S.T.4
Wei, G.5
Wang, Q.6
-
124
-
-
84861889354
-
Differential DNase i hypersensitivity reveals factor-dependent chromatin dynamics
-
PMID:22508765
-
He HH, Meyer CA, Chen MW, Jordan VC, Brown M, Liu XS. Differential DNase I hypersensitivity reveals factor-dependent chromatin dynamics. Genome Res 2012; 22:1015-25; PMID:22508765; http://dx.doi.org/10.1101/gr.133280.111.
-
(2012)
Genome Res
, vol.22
, pp. 1015-1025
-
-
He, H.H.1
Meyer, C.A.2
Chen, M.W.3
Jordan, V.C.4
Brown, M.5
Liu, X.S.6
-
125
-
-
79952266465
-
Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data
-
PMID:21106904
-
Pique-Regi R, Degner JF, Pai AA, Gaffney DJ, Gilad Y, Pritchard JK. Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data. Genome Res 2011; 21:447-55; PMID:21106904; http://dx.doi.org/10.1101/gr.112623.110.
-
(2011)
Genome Res
, vol.21
, pp. 447-455
-
-
Pique-Regi, R.1
Degner, J.F.2
Pai, A.A.3
Gaffney, D.J.4
Gilad, Y.5
Pritchard, J.K.6
-
126
-
-
83455164709
-
Non-DNA-binding cofactors enhance DNA-binding specificity of a transcriptional regulatory complex
-
PMID:22146299
-
Siggers T, Duyzend MH, Reddy J, Khan S, Bulyk ML. Non-DNA-binding cofactors enhance DNA-binding specificity of a transcriptional regulatory complex. Mol Syst Biol 2011; 7:555; PMID:22146299; http://dx.doi.org/10.1038/ msb.2011.89.
-
(2011)
Mol Syst Biol
, vol.7
, pp. 555
-
-
Siggers, T.1
Duyzend, M.H.2
Reddy, J.3
Khan, S.4
Bulyk, M.L.5
-
127
-
-
77951935861
-
Genome-wide MyoD binding in skeletal muscle cells: A potential for broad cellular reprogramming
-
PMID:20412780
-
Cao Y, Yao Z, Sarkar D, Lawrence M, Sanchez GJ, Parker MH, et al. Genome-wide MyoD binding in skeletal muscle cells: a potential for broad cellular reprogramming. Dev Cell 2010; 18:662-74; PMID:20412780; http://dx.doi.org/10.1016/j.devcel.2010.02.014.
-
(2010)
Dev Cell
, vol.18
, pp. 662-674
-
-
Cao, Y.1
Yao, Z.2
Sarkar, D.3
Lawrence, M.4
Sanchez, G.J.5
Parker, M.H.6
-
128
-
-
84861181567
-
CistromeMap: A knowledgebase and web server for ChIP-Seq and DNase-Seq studies in mouse and human
-
PMID:22495751
-
Qin B, Zhou M, Ge Y, Taing L, Liu T, Wang Q, et al. CistromeMap: a knowledgebase and web server for ChIP-Seq and DNase-Seq studies in mouse and human. Bioinformatics 2012; 28:1411-2; PMID:22495751; http://dx.doi.org/10.1093/ bioinformatics/bts157.
-
(2012)
Bioinformatics
, vol.28
, pp. 1411-1412
-
-
Qin, B.1
Zhou, M.2
Ge, Y.3
Taing, L.4
Liu, T.5
Wang, Q.6
-
129
-
-
84864452368
-
Cscan: Finding common regulators of a set of genes by using a collection of genome-wide ChIP-seq datasets
-
PMID:22669907
-
Zambelli F, Prazzoli GM, Pesole G, Pavesi G. Cscan: finding common regulators of a set of genes by using a collection of genome-wide ChIP-seq datasets. Nucleic Acids Res 2012; 40(Web Server issue):W510-5; PMID:22669907; http://dx.doi.org/10.1093/nar/gks483.
-
(2012)
Nucleic Acids Res
, vol.40
, Issue.WEB SERVER ISSUE
-
-
Zambelli, F.1
Prazzoli, G.M.2
Pesole, G.3
Pavesi, G.4
-
130
-
-
84862908850
-
Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation
-
PMID:22265404
-
Li G, Ruan X, Auerbach RK, Sandhu KS, Zheng M, Wang P, et al. Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation. Cell 2012; 148:84-98; PMID:22265404; http://dx.doi.org/10.1016/j.cell.2011.12.014.
-
(2012)
Cell
, vol.148
, pp. 84-98
-
-
Li, G.1
Ruan, X.2
Auerbach, R.K.3
Sandhu, K.S.4
Zheng, M.5
Wang, P.6
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