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Volumn 9, Issue 1, 2010, Pages 65-78

Lineage-specific transcription factors and the evolution of gene regulatory networks

Author keywords

Evolution; Gene regulatory network; Lineage specific genes; Transcription factors

Indexed keywords

TRANSCRIPTION FACTOR;

EID: 77950359470     PISSN: 14739550     EISSN: 14774062     Source Type: Journal    
DOI: 10.1093/bfgp/elp056     Document Type: Article
Times cited : (50)

References (81)
  • 1
    • 29244468298 scopus 로고    scopus 로고
    • Uncovering evolutionary patterns of gene expression using microarrays
    • Ranz JM, Machado CA. Uncovering evolutionary patterns of gene expression using microarrays. Trends Ecol Evol 2006;21:29-37.
    • (2006) Trends Ecol Evol , vol.21 , pp. 29-37
    • Ranz, J.M.1    Machado, C.A.2
  • 2
    • 46149104377 scopus 로고    scopus 로고
    • Evo-devo and an expanding evolutionary synthesis: a genetic theory of morphological evolution
    • Carroll SB. Evo-devo and an expanding evolutionary synthesis: a genetic theory of morphological evolution. Cell 2008;134:25-36.
    • (2008) Cell , vol.134 , pp. 25-36
    • Carroll, S.B.1
  • 3
    • 34247855863 scopus 로고    scopus 로고
    • The locus of evolution: evo devo and the genetics of adaptation
    • Hoekstra HE, Coyne JA. The locus of evolution: evo devo and the genetics of adaptation. Evolution 2007;61:995-1016.
    • (2007) Evolution , vol.61 , pp. 995-1016
    • Hoekstra, H.E.1    Coyne, J.A.2
  • 4
    • 2942606066 scopus 로고    scopus 로고
    • Structure and evolution of transcriptional regulatory networks
    • Babu MM, Luscombe NM, Aravind L, et al. Structure and evolution of transcriptional regulatory networks. Curr Opin Struct Biol 2004;14:283-91.
    • (2004) Curr Opin Struct Biol , vol.14 , pp. 283-291
    • Babu, M.M.1    Luscombe, N.M.2    Aravind, L.3
  • 5
    • 62549128139 scopus 로고    scopus 로고
    • A census of human transcription factors: function, expression and evolution
    • Vaquerizas JM, Kummerfeld SK, Teichmann SA, et al. A census of human transcription factors: function, expression and evolution. Nat Rev Genet 2009;10:252-63.
    • (2009) Nat Rev Genet , vol.10 , pp. 252-263
    • Vaquerizas, J.M.1    Kummerfeld, S.K.2    Teichmann, S.A.3
  • 6
    • 0029087714 scopus 로고
    • Repression of transcriptional activity by heterologous KRAB domains present in zinc finger proteins
    • Vissing H, Meyer WK, Aagaard L, et al. Repression of transcriptional activity by heterologous KRAB domains present in zinc finger proteins. FEBS Lett 1995;369:153-7.
    • (1995) FEBS Lett , vol.369 , pp. 153-157
    • Vissing, H.1    Meyer, W.K.2    Aagaard, L.3
  • 7
    • 2442631981 scopus 로고    scopus 로고
    • Convergent evolution of gene networks by single-gene duplications in higher eukaryotes
    • Amoutzias GD, Robertson DL, Oliver SG, et al. Convergent evolution of gene networks by single-gene duplications in higher eukaryotes. EMBO Rep 2004;5:274-9.
    • (2004) EMBO Rep , vol.5 , pp. 274-279
    • Amoutzias, G.D.1    Robertson, D.L.2    Oliver, S.G.3
  • 8
    • 43849088207 scopus 로고    scopus 로고
    • Choose your partners: dimerization in eukaryotic transcription factors
    • Amoutzias GD, Robertson DL, Van de Peer Y, et al. Choose your partners: dimerization in eukaryotic transcription factors. Trends Biochem Sci 2008;33:220-9.
    • (2008) Trends Biochem Sci , vol.33 , pp. 220-229
    • Amoutzias, G.D.1    Robertson, D.L.2    Van de Peer, Y.3
  • 9
    • 34548460204 scopus 로고    scopus 로고
    • Lineage-specific expansion of the zinc finger associated domain ZAD
    • Chung HR, Lohr U, Jackle H. Lineage-specific expansion of the zinc finger associated domain ZAD. Mol Biol Evol 2007;24:1934-43.
    • (2007) Mol Biol Evol , vol.24 , pp. 1934-1943
    • Chung, H.R.1    Lohr, U.2    Jackle, H.3
  • 10
    • 0027178112 scopus 로고
    • Evidence for a clustered genomic organization of FAX-zinc finger protein encoding transcription units in Xenopus laevis
    • Nietfeld W, Conrad S, van Wijk I, et al. Evidence for a clustered genomic organization of FAX-zinc finger protein encoding transcription units in Xenopus laevis. J Mol Biol 1993;230:400-12.
    • (1993) J Mol Biol , vol.230 , pp. 400-412
    • Nietfeld, W.1    Conrad, S.2    van Wijk, I.3
  • 11
    • 0346274978 scopus 로고    scopus 로고
    • KRAB-containing zinc-finger repressor proteins
    • Urrutia R. KRAB-containing zinc-finger repressor proteins. Genome Biol 2003;4:231.
    • (2003) Genome Biol , vol.4 , pp. 231
    • Urrutia, R.1
  • 12
    • 0041828241 scopus 로고    scopus 로고
    • Scaling laws in the functional content of genomes
    • van Nimwegen E. Scaling laws in the functional content of genomes. Trends Genet 2003;19:479-84.
    • (2003) Trends Genet , vol.19 , pp. 479-484
    • van Nimwegen, E.1
  • 13
    • 57749184792 scopus 로고    scopus 로고
    • Timing of genome duplications relative to the origin of the vertebrates: did cyclostomes diverge before or after?
    • Kuraku S, Meyer A, Kuratani S. Timing of genome duplications relative to the origin of the vertebrates: did cyclostomes diverge before or after? Mol Biol Evol 2009;26:47-59.
    • (2009) Mol Biol Evol , vol.26 , pp. 47-59
    • Kuraku, S.1    Meyer, A.2    Kuratani, S.3
  • 14
    • 0036725608 scopus 로고    scopus 로고
    • Analysis of lamprey and hagfish genes reveals a complex history of gene duplications during early vertebrate evolution
    • Escriva H, Manzon L, Youson J, et al. Analysis of lamprey and hagfish genes reveals a complex history of gene duplications during early vertebrate evolution. Mol Biol Evol 2002;19:1440-50.
    • (2002) Mol Biol Evol , vol.19 , pp. 1440-1450
    • Escriva, H.1    Manzon, L.2    Youson, J.3
  • 15
    • 17044413623 scopus 로고    scopus 로고
    • Aryl hydrocarbon receptor-dependent induction of loss of mitochondrial membrane potential in epididydimal spermatozoa by 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD)
    • Fisher MT, Nagarkatti M, Nagarkatti PS. Aryl hydrocarbon receptor-dependent induction of loss of mitochondrial membrane potential in epididydimal spermatozoa by 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD). Toxicol Lett 2005;157:99-107.
    • (2005) Toxicol Lett , vol.157 , pp. 99-107
    • Fisher, M.T.1    Nagarkatti, M.2    Nagarkatti, P.S.3
  • 16
    • 33745373606 scopus 로고    scopus 로고
    • Primate segmental duplications: crucibles of evolution, diversity and disease
    • Bailey JA, Eichler EE. Primate segmental duplications: crucibles of evolution, diversity and disease. Nat Rev Genet 2006;7:552-64.
    • (2006) Nat Rev Genet , vol.7 , pp. 552-564
    • Bailey, J.A.1    Eichler, E.E.2
  • 17
    • 37249061101 scopus 로고    scopus 로고
    • Accelerated rate of gene gain and loss in primates
    • Hahn MW, Demuth JP, Han SG. Accelerated rate of gene gain and loss in primates. Genetics 2007;177:1941-9.
    • (2007) Genetics , vol.177 , pp. 1941-1949
    • Hahn, M.W.1    Demuth, J.P.2    Han, S.G.3
  • 18
    • 59849091566 scopus 로고    scopus 로고
    • The life and death of gene families
    • Demuth JP, Hahn MW. The life and death of gene families. Bioessays 2009;31:29-39.
    • (2009) Bioessays , vol.31 , pp. 29-39
    • Demuth, J.P.1    Hahn, M.W.2
  • 19
    • 77951998316 scopus 로고    scopus 로고
    • Rapid expansion and divergence suggest a central and distinct role for KRAB-ZNF genes in vertebrate evolution
    • Yoshida K (ed) Research Signpost
    • Nowick K, Huntley S, Stubbs L. Rapid expansion and divergence suggest a central and distinct role for KRAB-ZNF genes in vertebrate evolution. In: Yoshida K (ed). Focus on Zinc Finger Protein Research. Research Signpost 2009; 13-29.
    • (2009) Focus on Zinc Finger Protein Research , pp. 13-29
    • Nowick, K.1    Huntley, S.2    Stubbs, L.3
  • 20
    • 33745179207 scopus 로고    scopus 로고
    • A comprehensive catalog of human KRAB-associated zinc finger genes: insights into the evolutionary history of a large family of transcriptional repressors
    • Huntley S, Baggott DM, Hamilton AT, et al. A comprehensive catalog of human KRAB-associated zinc finger genes: insights into the evolutionary history of a large family of transcriptional repressors. Genome Res 2006;16:669-77.
    • (2006) Genome Res , vol.16 , pp. 669-677
    • Huntley, S.1    Baggott, D.M.2    Hamilton, A.T.3
  • 21
    • 0028342845 scopus 로고
    • The evolution of functionally novel proteins after gene duplication
    • Hughes AL. The evolution of functionally novel proteins after gene duplication. Proc Biol Sci 1994;256:119-24.
    • (1994) Proc Biol Sci , vol.256 , pp. 119-124
    • Hughes, A.L.1
  • 22
    • 0034634395 scopus 로고    scopus 로고
    • The evolutionary fate and consequences of duplicate genes
    • Lynch M, Conery JS. The evolutionary fate and consequences of duplicate genes. Science 2000;290:1151-5.
    • (2000) Science , vol.290 , pp. 1151-1155
    • Lynch, M.1    Conery, J.S.2
  • 23
    • 0033209289 scopus 로고    scopus 로고
    • Gene duplication and the uniqueness of vertebrate genomes circa 1970-1999
    • Ohno S. Gene duplication and the uniqueness of vertebrate genomes circa 1970-1999. Semin Cell Dev Biol 1999;10:517-22.
    • (1999) Semin Cell Dev Biol , vol.10 , pp. 517-522
    • Ohno, S.1
  • 24
    • 66049138497 scopus 로고    scopus 로고
    • Adaptive evolution of young gene duplicates in mammals
    • Han MV, Demuth JP, McGrath CL, et al. Adaptive evolution of young gene duplicates in mammals. Genome Res 2009;19:859-67.
    • (2009) Genome Res , vol.19 , pp. 859-867
    • Han, M.V.1    Demuth, J.P.2    McGrath, C.L.3
  • 25
    • 33745106263 scopus 로고    scopus 로고
    • Identification and evolutionary analysis of novel exons and alternative splicing events using cross-species EST-to-genome comparisons in human, mouse and rat
    • Chen FC, Chen CJ, Ho JY, et al. Identification and evolutionary analysis of novel exons and alternative splicing events using cross-species EST-to-genome comparisons in human, mouse and rat. BMC Bioinformatics 2006;7:136.
    • (2006) BMC Bioinformatics , vol.7 , pp. 136
    • Chen, F.C.1    Chen, C.J.2    Ho, J.Y.3
  • 26
    • 27144539145 scopus 로고    scopus 로고
    • Natural selection on protein-coding genes in the human genome
    • Bustamante CD, Fledel-Alon A, Williamson S, et al. Natural selection on protein-coding genes in the human genome. Nature 2005;437:1153-7.
    • (2005) Nature , vol.437 , pp. 1153-1157
    • Bustamante, C.D.1    Fledel-Alon, A.2    Williamson, S.3
  • 27
    • 20444430245 scopus 로고    scopus 로고
    • A scan for positively selected genes in the genomes of humans and chimpanzees
    • Nielsen R, Bustamante C, Clark AG, et al. A scan for positively selected genes in the genomes of humans and chimpanzees. PLoS Biol 2005;3:e170.
    • (2005) PLoS Biol , vol.3
    • Nielsen, R.1    Bustamante, C.2    Clark, A.G.3
  • 28
    • 33745134398 scopus 로고    scopus 로고
    • Evolutionary expansion and divergence in the ZNF91 subfamily of primate-specific zinc finger genes
    • Hamilton AT, Huntley S, Tran-Gyamfi M, et al. Evolutionary expansion and divergence in the ZNF91 subfamily of primate-specific zinc finger genes. Genome Res 2006;16:584-94.
    • (2006) Genome Res , vol.16 , pp. 584-594
    • Hamilton, A.T.1    Huntley, S.2    Tran-Gyamfi, M.3
  • 29
    • 76049088399 scopus 로고    scopus 로고
    • Differences in human and chimpanzee gene expression patterns define an evolving network of transcription factors in brain
    • Nowick K, Gernat T, Almaas E, et al. Differences in human and chimpanzee gene expression patterns define an evolving network of transcription factors in brain. Proc Natl Acad Sci USA 2009;106:22358-63.
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 22358-22363
    • Nowick, K.1    Gernat, T.2    Almaas, E.3
  • 30
    • 0742305866 scopus 로고    scopus 로고
    • Network biology: understanding the cell's functional organization
    • Barabasi AL, Oltvai ZN. Network biology: understanding the cell's functional organization. Nat Rev Genet 2004;5:101-13.
    • (2004) Nat Rev Genet , vol.5 , pp. 101-113
    • Barabasi, A.L.1    Oltvai, Z.N.2
  • 31
    • 0037174670 scopus 로고    scopus 로고
    • Network motifs: simple building blocks of complex networks
    • Milo R, Shen-Orr S, Itzkovitz S, et al. Network motifs: simple building blocks of complex networks. Science 2002; 298:824-7.
    • (2002) Science , vol.298 , pp. 824-827
    • Milo, R.1    Shen-Orr, S.2    Itzkovitz, S.3
  • 32
    • 0142027814 scopus 로고    scopus 로고
    • Structure and function of the feedforward loop network motif
    • Mangan S, Alon U. Structure and function of the feedforward loop network motif. Proc Natl Acad Sci USA 2003;100:11980-5.
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 11980-11985
    • Mangan, S.1    Alon, U.2
  • 33
    • 35748958993 scopus 로고    scopus 로고
    • Evolutionary models for formation of network motifs and modularity in the Saccharomyces transcription factor network
    • Ward JJ, Thornton JM. Evolutionary models for formation of network motifs and modularity in the Saccharomyces transcription factor network. PLoS Comput Biol 2007;3: 1993-2002.
    • (2007) PLoS Comput Biol , vol.3 , pp. 1993-2002
    • Ward, J.J.1    Thornton, J.M.2
  • 34
    • 69249127529 scopus 로고    scopus 로고
    • Genomic analysis reveals a tight link between transcription factor dynamics and regulatory network architecture
    • Jothi R, Balaji S, Wuster A, et al. Genomic analysis reveals a tight link between transcription factor dynamics and regulatory network architecture. Mol Syst Biol 2009;5:294.
    • (2009) Mol Syst Biol , vol.5 , pp. 294
    • Jothi, R.1    Balaji, S.2    Wuster, A.3
  • 35
    • 32444446240 scopus 로고    scopus 로고
    • Gene regulatory networks and the evolution of animal body plans
    • Davidson EH, Erwin DH. Gene regulatory networks and the evolution of animal body plans. Science 2006;311:796-800.
    • (2006) Science , vol.311 , pp. 796-800
    • Davidson, E.H.1    Erwin, D.H.2
  • 36
    • 33947396707 scopus 로고    scopus 로고
    • Development. Built to run, not fail
    • Oliveri P, Davidson EH. Development. Built to run, not fail. Science 2007;315:1510-1.
    • (2007) Science , vol.315 , pp. 1510-1511
    • Oliveri, P.1    Davidson, E.H.2
  • 37
    • 58149484991 scopus 로고    scopus 로고
    • Regulatory logic of neuronal diversity: terminal selector genes and selector motifs
    • Hobert O. Regulatory logic of neuronal diversity: terminal selector genes and selector motifs. Proc Natl Acad Sci USA 2008;105:20067-71.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 20067-20071
    • Hobert, O.1
  • 38
    • 0036578654 scopus 로고    scopus 로고
    • Topological and causal structure of the yeast transcriptional regulatory network
    • Guelzim N, Bottani S, Bourgine P, et al. Topological and causal structure of the yeast transcriptional regulatory network. Nat Genet 2002;31:60-3.
    • (2002) Nat Genet , vol.31 , pp. 60-63
    • Guelzim, N.1    Bottani, S.2    Bourgine, P.3
  • 39
    • 4644326931 scopus 로고    scopus 로고
    • Genomic analysis of regulatory network dynamics reveals large topological changes
    • Luscombe NM, Babu MM, Yu H, et al. Genomic analysis of regulatory network dynamics reveals large topological changes. Nature 2004;431:308-12.
    • (2004) Nature , vol.431 , pp. 308-312
    • Luscombe, N.M.1    Babu, M.M.2    Yu, H.3
  • 40
    • 33646113855 scopus 로고    scopus 로고
    • Evolutionary dynamics of prokaryotic transcriptional regulatory networks
    • Madan Babu M, Teichmann SA, Aravind L. Evolutionary dynamics of prokaryotic transcriptional regulatory networks. J Mol Biol 2006;358:614-33.
    • (2006) J Mol Biol , vol.358 , pp. 614-633
    • Madan Babu, M.1    Teichmann, S.A.2    Aravind, L.3
  • 41
    • 66749098497 scopus 로고    scopus 로고
    • Degree dependence in rates of transcription factor evolution explains the unusual structure of transcription networks
    • Stewart AJ, Seymour RM, Pomiankowski A. Degree dependence in rates of transcription factor evolution explains the unusual structure of transcription networks. Proc Biol Sci 2009;276:2493-501.
    • (2009) Proc Biol Sci , vol.276 , pp. 2493-2501
    • Stewart, A.J.1    Seymour, R.M.2    Pomiankowski, A.3
  • 42
    • 2442477788 scopus 로고    scopus 로고
    • Genomic analysis of essentiality within protein networks
    • Yu H, Greenbaum D, Xin Lu H, et al. Genomic analysis of essentiality within protein networks. Trends Genet 2004;20: 227-31.
    • (2004) Trends Genet , vol.20 , pp. 227-231
    • Yu, H.1    Greenbaum, D.2    Xin Lu, H.3
  • 43
    • 48249134043 scopus 로고    scopus 로고
    • Evolution of evolvability in gene regulatory networks
    • Crombach A, Hogeweg P. Evolution of evolvability in gene regulatory networks. PLoS Comput Biol 2008;4:e1000112.
    • (2008) PLoS Comput Biol , vol.4
    • Crombach, A.1    Hogeweg, P.2
  • 44
    • 65449187535 scopus 로고    scopus 로고
    • Evolutionary rates and centrality in the yeast gene regulatory network
    • Jovelin R, Phillips PC. Evolutionary rates and centrality in the yeast gene regulatory network. Genome Biol 2009;10:R35.
    • (2009) Genome Biol , vol.10
    • Jovelin, R.1    Phillips, P.C.2
  • 45
    • 4344624948 scopus 로고    scopus 로고
    • Molecular evolution in the yeast transcriptional regulation network
    • Evangelisti AM, Wagner A. Molecular evolution in the yeast transcriptional regulation network. J Exp Zool BMol Dev Evol 2004;302:392-411.
    • (2004) J Exp Zool BMol Dev Evol , vol.302 , pp. 392-411
    • Evangelisti, A.M.1    Wagner, A.2
  • 46
    • 67650337477 scopus 로고    scopus 로고
    • High nucleotide divergence in developmental regulatory genes contrasts with the structural elements of olfactory pathways in Caenorhabditis
    • Jovelin R, Dunham JP, Sung FS, et al. High nucleotide divergence in developmental regulatory genes contrasts with the structural elements of olfactory pathways in Caenorhabditis. Genetics 2009;181:1387-97.
    • (2009) Genetics , vol.181 , pp. 1387-1397
    • Jovelin, R.1    Dunham, J.P.2    Sung, F.S.3
  • 47
    • 33749991402 scopus 로고    scopus 로고
    • Global similarity and local divergence in human and mouse gene co-expression networks
    • Tsaparas P, Marino-Ramirez L, Bodenreider O, et al. Global similarity and local divergence in human and mouse gene co-expression networks. BMC Evol Biol 2006;6:70.
    • (2006) BMC Evol Biol , vol.6 , pp. 70
    • Tsaparas, P.1    Marino-Ramirez, L.2    Bodenreider, O.3
  • 48
    • 33845231723 scopus 로고    scopus 로고
    • Conservation and evolution of gene coexpression networks in human and chimpanzee brains
    • Oldham MC, Horvath S, Geschwind DH. Conservation and evolution of gene coexpression networks in human and chimpanzee brains. Proc Natl Acad Sci USA 2006;103:17973-8.
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 17973-17978
    • Oldham, M.C.1    Horvath, S.2    Geschwind, D.H.3
  • 49
    • 36348960081 scopus 로고    scopus 로고
    • Spontaneous emergence of modularity in cellular networks
    • Sole RV, Valverde S. Spontaneous emergence of modularity in cellular networks. J R Soc Interface 2008;5:129-33.
    • (2008) J R Soc Interface , vol.5 , pp. 129-133
    • Sole, R.V.1    Valverde, S.2
  • 50
    • 67651180919 scopus 로고    scopus 로고
    • The role of genome and gene regulatory network canalization in the evolution of multi-trait polymorphisms and sympatric speciation
    • ten Tusscher KH, Hogeweg P. The role of genome and gene regulatory network canalization in the evolution of multi-trait polymorphisms and sympatric speciation. BMC Evol Biol 2009;9:159.
    • (2009) BMC Evol Biol , vol.9 , pp. 159
    • ten Tusscher, K.H.1    Hogeweg, P.2
  • 51
    • 0034667792 scopus 로고    scopus 로고
    • Orchestrated response: a symphony of transcription factors for gene control
    • Lemon B, Tjian R. Orchestrated response: a symphony of transcription factors for gene control. Genes Dev 2000;14: 2551-69.
    • (2000) Genes Dev , vol.14 , pp. 2551-2569
    • Lemon, B.1    Tjian, R.2
  • 52
    • 4444358439 scopus 로고    scopus 로고
    • Bmp4 and morphological variation of beaks in Darwin's finches
    • Abzhanov A, Protas M, Grant BR, et al. Bmp4 and morphological variation of beaks in Darwin's finches. Science 2004;305:1462-5.
    • (2004) Science , vol.305 , pp. 1462-1465
    • Abzhanov, A.1    Protas, M.2    Grant, B.R.3
  • 53
    • 4444286099 scopus 로고    scopus 로고
    • Molecular shaping of the beak
    • Wu P, Jiang TX, Suksaweang S, et al. Molecular shaping of the beak. Science 2004;305:1465-6.
    • (2004) Science , vol.305 , pp. 1465-1466
    • Wu, P.1    Jiang, T.X.2    Suksaweang, S.3
  • 54
    • 33748797152 scopus 로고    scopus 로고
    • Parallel genetic origins of pelvic reduction in vertebrates
    • Shapiro MD, Bell MA, Kingsley DM. Parallel genetic origins of pelvic reduction in vertebrates. Proc Natl Acad Sci USA 2006;103:13753-8.
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 13753-13758
    • Shapiro, M.D.1    Bell, M.A.2    Kingsley, D.M.3
  • 55
    • 34548570117 scopus 로고    scopus 로고
    • A protein interaction atlas for the nuclear receptors: properties and quality of a hub-based dimerisation network
    • Amoutzias GD, Pichler EE, Mian N, et al. A protein interaction atlas for the nuclear receptors: properties and quality of a hub-based dimerisation network. BMC Syst Biol 2007;1:34.
    • (2007) BMC Syst Biol , vol.1 , pp. 34
    • Amoutzias, G.D.1    Pichler, E.E.2    Mian, N.3
  • 56
    • 2442537233 scopus 로고    scopus 로고
    • Gene regulatory network growth by duplication
    • Teichmann SA, Babu MM. Gene regulatory network growth by duplication. Nat Genet 2004;36:492-6.
    • (2004) Nat Genet , vol.36 , pp. 492-496
    • Teichmann, S.A.1    Babu, M.M.2
  • 57
    • 26444488575 scopus 로고    scopus 로고
    • Expression divergence between duplicate genes
    • Li WH, Yang J, Gu X. Expression divergence between duplicate genes. Trends Genet 2005;21:602-7.
    • (2005) Trends Genet , vol.21 , pp. 602-607
    • Li, W.H.1    Yang, J.2    Gu, X.3
  • 58
    • 0013173298 scopus 로고    scopus 로고
    • Modeling of protein interaction networks
    • Vazquez A, Flammini A, Maritan A, et al. Modeling of protein interaction networks. ComPlexUs 2003;1:38-44.
    • (2003) ComPlexUs , vol.1 , pp. 38-44
    • Vazquez, A.1    Flammini, A.2    Maritan, A.3
  • 59
    • 24644486450 scopus 로고    scopus 로고
    • Do disparate mechanisms of duplication add similar genes to the genome?
    • Davis JC, Petrov DA. Do disparate mechanisms of duplication add similar genes to the genome? Trends Genet 2005;21:548-51.
    • (2005) Trends Genet , vol.21 , pp. 548-551
    • Davis, J.C.1    Petrov, D.A.2
  • 60
    • 34247847827 scopus 로고    scopus 로고
    • Functional analysis of gene duplications in Saccharomyces cerevisiae
    • Guan Y, Dunham MJ, Troyanskaya OG. Functional analysis of gene duplications in Saccharomyces cerevisiae. Genetics 2007;175:933-43.
    • (2007) Genetics , vol.175 , pp. 933-943
    • Guan, Y.1    Dunham, M.J.2    Troyanskaya, O.G.3
  • 61
    • 33646859550 scopus 로고    scopus 로고
    • Nonrandom divergence of gene expression following gene and genome duplications in the flowering plant Arabidopsis thaliana
    • Casneuf T, De Bodt S, Raes J, et al. Nonrandom divergence of gene expression following gene and genome duplications in the flowering plant Arabidopsis thaliana. Genome Biol 2006;7:R13.
    • (2006) Genome Biol , vol.7
    • Casneuf, T.1    De Bodt, S.2    Raes, J.3
  • 62
    • 34548527460 scopus 로고    scopus 로고
    • Comparative analysis indicates regulatory neofunctionalization of yeast duplicates
    • Tirosh I, Barkai N. Comparative analysis indicates regulatory neofunctionalization of yeast duplicates. Genome Biol 2007;8:R50.
    • (2007) Genome Biol , vol.8
    • Tirosh, I.1    Barkai, N.2
  • 63
    • 33646230540 scopus 로고    scopus 로고
    • Functional partitioning of yeast co-expression networks after genome duplication
    • Conant GC, Wolfe KH. Functional partitioning of yeast co-expression networks after genome duplication. PLoS Biol 2006;4:e109.
    • (2006) PLoS Biol , vol.4
    • Conant, G.C.1    Wolfe, K.H.2
  • 64
    • 33645036468 scopus 로고    scopus 로고
    • Rapid and asymmetric divergence of duplicate genes in the human gene coexpression network
    • Chung WY, Albert R, Albert I, et al. Rapid and asymmetric divergence of duplicate genes in the human gene coexpression network. BMC Bioinformatics 2006;7:46.
    • (2006) BMC Bioinformatics , vol.7 , pp. 46
    • Chung, W.Y.1    Albert, R.2    Albert, I.3
  • 65
    • 46749157875 scopus 로고    scopus 로고
    • Evolution of C2H2-zinc finger genes and subfamilies in mammals: speciesspecific duplication and loss of clusters, genes and effector domains
    • Tadepally HD, Burger G, Aubry M. Evolution of C2H2-zinc finger genes and subfamilies in mammals: speciesspecific duplication and loss of clusters, genes and effector domains. BMC Evol Biol 2008;8:176.
    • (2008) BMC Evol Biol , vol.8 , pp. 176
    • Tadepally, H.D.1    Burger, G.2    Aubry, M.3
  • 66
    • 34347353316 scopus 로고    scopus 로고
    • Genome-wide analysis of KAP1 binding suggests autoregulation of KRAB-ZNFs
    • O'Geen H, Squazzo SL, Iyengar S, et al. Genome-wide analysis of KAP1 binding suggests autoregulation of KRAB-ZNFs. PLoS Genet 2007;3:e89.
    • (2007) PLoS Genet , vol.3
    • O'Geen, H.1    Squazzo, S.L.2    Iyengar, S.3
  • 67
    • 33845295138 scopus 로고    scopus 로고
    • Human heterochromatin proteins form large domains containing KRAB-ZNF genes
    • Vogel MJ, Guelen L, de Wit E, et al. Human heterochromatin proteins form large domains containing KRAB-ZNF genes. Genome Res 2006;16:1493-1504.
    • (2006) Genome Res , vol.16 , pp. 1493-1504
    • Vogel, M.J.1    Guelen, L.2    de Wit, E.3
  • 68
    • 58949084539 scopus 로고    scopus 로고
    • Adaptive evolution in zinc finger transcription factors
    • Emerson RO, Thomas JH. Adaptive evolution in zinc finger transcription factors. PLoS Genet 2009;5: e1000325.
    • (2009) PLoS Genet , vol.5
    • Emerson, R.O.1    Thomas, J.H.2
  • 69
    • 33845875196 scopus 로고    scopus 로고
    • Relating three-dimensional structures to protein networks provides evolutionary insights
    • Kim PM, Lu LJ, Xia Y, et al. Relating three-dimensional structures to protein networks provides evolutionary insights. Science 2006;314:1938-41.
    • (2006) Science , vol.314 , pp. 1938-1941
    • Kim, P.M.1    Lu, L.J.2    Xia, Y.3
  • 70
    • 41949142868 scopus 로고    scopus 로고
    • Evolution of a core gene network for skeletogenesis in chordates
    • Hecht J, Stricker S, Wiecha U, et al. Evolution of a core gene network for skeletogenesis in chordates. PLoS Genet 2008;4:e1000025.
    • (2008) PLoS Genet , vol.4
    • Hecht, J.1    Stricker, S.2    Wiecha, U.3
  • 71
    • 34548018528 scopus 로고    scopus 로고
    • Mechanistic approaches to the study of evolution: the functional synthesis
    • Dean AM, Thornton JW. Mechanistic approaches to the study of evolution: the functional synthesis. Nat Rev Genet 2007;8:675-88.
    • (2007) Nat Rev Genet , vol.8 , pp. 675-688
    • Dean, A.M.1    Thornton, J.W.2
  • 72
    • 56049120302 scopus 로고    scopus 로고
    • Evolutionary origins of human apoptosis and genome-stability gene networks
    • Castro MA, Dalmolin RJ, Moreira JC, et al. Evolutionary origins of human apoptosis and genome-stability gene networks. Nucleic Acids Res 2008;36:6269-83.
    • (2008) Nucleic Acids Res , vol.36 , pp. 6269-6283
    • Castro, M.A.1    Dalmolin, R.J.2    Moreira, J.C.3
  • 73
    • 64249101543 scopus 로고    scopus 로고
    • Evolution of gene regulatory network architectures: examples of subcircuit conservation and plasticity between classes of echinoderms
    • Hinman VF, Yankura KA, McCauley BS. Evolution of gene regulatory network architectures: examples of subcircuit conservation and plasticity between classes of echinoderms. Biochim Biophys Acta 2009;1789:326-32.
    • (2009) Biochim Biophys Acta , vol.1789 , pp. 326-332
    • Hinman, V.F.1    Yankura, K.A.2    McCauley, B.S.3
  • 74
    • 54849416139 scopus 로고    scopus 로고
    • Evolutionarily conserved transcriptional co-expression guiding embryonic stem cell differentiation
    • Sun Y, Li H, Liu Y, et al. Evolutionarily conserved transcriptional co-expression guiding embryonic stem cell differentiation. PLoS One 2008;3:e3406.
    • (2008) PLoS One , vol.3
    • Sun, Y.1    Li, H.2    Liu, Y.3
  • 75
    • 72849157693 scopus 로고
    • Quantitative measurements of cerebral blood flow in man
    • Sokoloff L. Quantitative measurements of cerebral blood flow in man. Methods Med Res 1960;8:253-61.
    • (1960) Methods Med Res , vol.8 , pp. 253-261
    • Sokoloff, L.1
  • 76
    • 28844466854 scopus 로고    scopus 로고
    • Comparing the human and chimpanzee genomes: searching for needles in a haystack
    • Varki A, Altheide TK. Comparing the human and chimpanzee genomes: searching for needles in a haystack. Genome Res 2005;15:1746-58.
    • (2005) Genome Res , vol.15 , pp. 1746-1758
    • Varki, A.1    Altheide, T.K.2
  • 77
    • 68749092138 scopus 로고    scopus 로고
    • The organization of the transcriptional network in specific neuronal classes
    • Winden KD, Oldham MC, Mirnics K, et al. The organization of the transcriptional network in specific neuronal classes. Mol Syst Biol 2009;5:291.
    • (2009) Mol Syst Biol , vol.5 , pp. 291
    • Winden, K.D.1    Oldham, M.C.2    Mirnics, K.3
  • 78
    • 12244297808 scopus 로고    scopus 로고
    • Genomic expansion and clustering of ZAD-containing C2H2 zinc-finger genes in Drosophila
    • Chung HR, Schafer U, Jackle H, et al. Genomic expansion and clustering of ZAD-containing C2H2 zinc-finger genes in Drosophila. EMBO Rep 2002;3:1158-62.
    • (2002) EMBO Rep , vol.3 , pp. 1158-1162
    • Chung, H.R.1    Schafer, U.2    Jackle, H.3
  • 79
    • 0017368336 scopus 로고
    • Preponderance of synonymous changes as evidence for the neutral theory of molecular evolution
    • Kimura M. Preponderance of synonymous changes as evidence for the neutral theory of molecular evolution. Nature 1977;267:275-6.
    • (1977) Nature , vol.267 , pp. 275-276
    • Kimura, M.1
  • 80
    • 19344372220 scopus 로고    scopus 로고
    • A neutral model of transcriptome evolution
    • Khaitovich P, Weiss G, Lachmann M, et al. A neutral model of transcriptome evolution. PLoS Biol 2004;2:E132.
    • (2004) PLoS Biol , vol.2
    • Khaitovich, P.1    Weiss, G.2    Lachmann, M.3
  • 81
    • 24344459066 scopus 로고    scopus 로고
    • A genome-wide comparison of recent chimpanzee and human segmental duplications
    • Cheng Z, Ventura M, She X, et al. A genome-wide comparison of recent chimpanzee and human segmental duplications. Nature 2005;437:88-93.
    • (2005) Nature , vol.437 , pp. 88-93
    • Cheng, Z.1    Ventura, M.2    She, X.3


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