Integrating ecology and systematics in climate change research

Climate Change, Ecology and Systematics

Volumn , Issue , 2011, Pages 3-43

  Hodkinson, T R ^a  

^a TRINITY COLLEGE DUBLIN   (Ireland)

Author keywords

[No Author keywords available]

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EID: 84864766980     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1017/CBO9780511974540.002     Document Type: Chapter

References (232)

1. Alroy, J. (2008). Dynamics of origination and extinction in the marine fossil record. Proceedings of the National Academy of Sciences of the USA, 105, 11536-11542.
2. Alroy, J., Aberhan, M., Bottjer, D. J. et al. (2008). Phanerozoic trends in the global diversity of marine invertebrates. Science, 321, 97-100.
3. Araújo, M. B. and Guisan, A. (2006). Five (or so) challenges for species distribution modelling. Journal of Biogeography, 33, 1677-1688.
4. Araújo, M. B., Cabeza, M., Thuiller, W., Hannah, L. and Williams, P. H. (2004). Would climate change drive species out of reserves? An assessment of existing reserveselection methods. Global Change Biology, 10, 1618-1626.
5. Archer, D. (2007). Methane hydrate stability and anthropogenic climate change. Biogeosciences, 4, 521-544.
6. Arrhenius, S. (1908). Worlds in the Making: the Evolution of the Universe. New York, NY: Harper.
7. Barnard, P. and Thuiller, W. (2008). Global change and biodiversity: future challenges. Biology Letters, 4, 553-555.
8. Barnosky, A. D. (2001). Distinguishing the effects of the red queen and court jester on Miocene mammal evolution in the northern rocky mountains. Journal of Vertebrate Paleontology, 21, 172-185.
9. Beaumont, L. J., Hughes, L. and Poulsen, M. (2005). Predicting species’ distributions: use of climatic parameters in BIOCLIM and its impact on predictions of species’ current and future distributions. Ecological Modelling, 186, 250-269.
10. Beerling, D. J. (2005). Leaf evolution: gases, genes and geochemistry. Annals of Botany, 96, 345-352.
11. Beerling, D. J. (2009). The Emerald Planet: How Plants Changed Earth's History. Oxford: Oxford University Press.
12. Beerling, D. J. and Berner, R. A. (2005). Feedbacks and the coevolution of plants and atmospheric CO2. Proceedings of the National Academy of Sciences of the USA, 102, 1302-1305.
13. Beerling, D. J. and Woodward, F. I. (2001). Vegetation and the Terrestrial Carbon Cycle: Modelling the First 400 Million Years. Cambridge: Cambridge University Press.
14. Beerling, D. J., Osborne, C. P. and Chaloner, W. G. (2001). Evolution of leaf-form in land plants linked to atmospheric CO2 decline in the Late Palaeozoicera. Nature, 410, 352-354.
15. Benton, M. J. (2003). When Life Nearly Died: the Greatest Mass Extinction of All Time. London: Thames and Hudson.
16. Benton, M. J. (2009). The Red Queen and the Court Jester: species diversity and the role of biotic and abiotic factors through time. Science, 323, 728-732.
17. Benton, M. J. and Twitchett, R. J. (2003). How to kill (almost) all life: the end- Permian extinction event. Trends in Ecology and Evolution, 18, 358-365.
18. Berner, R. A. (1997). The rise of plants and their effect on weathering and atmospheric CO2. Science, 276, 544-546.
19. Berner, R. A. (2004). The Phanerozoic Carbon Cycle: CO2 and O2. Oxford: Oxford University Press.
20. Berteaux, D., Reale, D., McAdam, A. G. and Boutin, S. (2004). Keeping pace with fast climate change: can Arctic life count on evolution? Integrative and Comparative Biology, 44, 140-151.
21. Besnard, G., Muasya, A. M., Russier, F. et al. (2009). Phylogenomics of C 4 photosynthesis in sedges (Cyperaceae): multiple appearances and genetic convergence. Molecular Biology and Evolution, 26, 1909-1919.
22. Both, C., Bouwhuis, S., Lessells, C. M. and Visser, M. E. (2006). Climate change and population declines in a longdistance migratory bird. Nature, 441, 81-83.
23. Bouchenak-Khelladi, Y., Salamin, N., Savolainen, V. et al. (2008). Large multi-gene phylogenetic trees of the grasses (Poaceae): progress towards complete tribal and generic level sampling. Molecular Phylogenetics and Evolution, 47, 488-505.
24. Bouchenak-Khelladi, Y., Verboom, G. A., Hodkinson, T. R. et al. (2009). The origins and diversification of C4 grasses and savanna-adapted ungulates. Global Change Biology, 15, 2397-2417.
25. Bouchenak-Khelladi, Verboom, G. A., Savolainen, V. and Hodkinson, T. R. (2010). Biogeography of the grasses (Poaceae): a phylogenetic approach to reveal evolutionary history in geographical space and geological time. Botanical Journal of the Linnean Society, 162, 543-557.
26. Bradshaw, A. D. (1965). Evolutionary significance of phenotypic plasticity in plants. Advances in Genetics, 13, 115-155.
27. Bradshaw, W. E. and Holzapfel, C. M. (2006). Evolutionary response to rapid climate change. Science, 312, 1477-1478.
28. Breckle, S. W. (2002). Walter's Vegetation of the Earth: the Ecological Systems of the GeoBiosphere, 4Thedn. Berlin: Springer-Verlag.
29. Broecker, W. S. (1994). Massive iceberg discharges as triggers for global climate change. Nature, 372, 421-424.
30. Broennimann, O. and Guisan, A. (2008). Predicting current and future biological invasions: both native and invaded ranges matter. Biological Letters, 4, 585-589.
31. Broennimann, O., Treier, U. A., Müller- Schärer, H. et al. (2007). Evidence of climatic niche shift during biological invasion. Ecology Letters, 10, 701-709.
32. Caldeira, K. and Kasting, J. F. (1992). Susceptibility of the early Earth to irreversible glaciation caused by carbon dioxide clouds. Nature, 359, 226-228.
33. Campbell, N. A., Reece, J. B., Urry, L. A. et al. (2008). Biology, 8Thedn. London: Pearson Benjamin Cummings.
34. Carnaval, A. C. and Moritz, C. (2008). Historical climate modelling predicts patterns of current biodiversity in the Brazilian Atlantic forest. Journal of Biogeography, 25, 1187-1201.
35. Christin, P. A., Besnard, G., Samaritani, E. et al. (2008). Oligocene CO2 decline promoted C4 photosynthesis in grasses. Current Biology, 18, 37-43.
36. Cleland, E. E., Chuine, I., Menzel, A., Mooney, H. A. and Schwartz, M. D. (2007). Shifting plant phenology in response to global change. Trends in Ecology and Evolution, 22, 357-365.
37. Copley, J. (2001). The story of O. Nature, 410, 862-864.
38. Cornette, J. L., Lieberman, B. S. and Goldstein, R. H. (2002). Documenting a significant relationship between macroevolutionary origination rates and Phanerozoic pCO2 levels. Proceedings of the National Academy of Sciences of the USA, 99, 7832-7835.
39. Cotton, P. A. (2003). Avian migration phenology and global climate change. Proceedings of the National Academy of Sciences of the USA, 100, 12219-12222.
40. Cox, M., Cox, C. B. and Moore, P. D. (2010). Biogeography: an Ecological and Evolutionary Approach, 8Thedn. Oxford: Wiley.
41. Cox, P. M., Betts, R. A., Jones, C. D., Spall, S. A. and Totterdell, I. J. (2000). Acceleration of global warming due to carbon-cycle feedbacks in a coupled climate model. Nature, 408, 184-187.
42. Cramer, B. S., Toggweiler, J. R., Wright, J. D., Katz, M. E. and Miller, K. G. (2009). Ocean overturning since the Late Cretaceous: inferences from a new benthic foraminiferal isotope compilation. Paleoceanography, 24, PA 4216, 1-14.
43. Cramer, W., Bondeau, A., Woodward, F. I. et al. (2001). Global response of terrestrial ecosystem structure and function to CO2 and climate change: results from six dynamic global vegetation models. Global Change Biology, 7, 357-373.
44. Crawford, R. M. M. (2008). Plants at the Margin: Ecological Limits and Climate Change. Cambridge: Cambridge University Press.
45. Darwin, C. (1859). On the Origin of Species by Means of Natural Selection, or the Preservation of Favoured Races in the Struggle for Life. London: John Murray.
46. Darwin, C. R. and Wallace, A. R. (1858). On the tendency of species to form varieties; and on the perpetuation of varieties and species by natural means of selection. Journal of the Proceedings of the Linnean Society of London, Zoology, 3, 46-50.
47. Davis, M. B. (2005). Comparison of climate space and phylogeny of Marmota (Mammalia: Rodentia) indicates a connection between evolutionary history and climate preference. Proceedings of the Royal Society of London B, 272, 519-526.
48. Davis, M. B. and Shaw, R. G. (2001). Range shifts and adaptive responses to quaternary climate change. Science, 292, 673-679.
49. DeConto, R. M., Pollard, D., Wilson, P. et al. (2008). Thresholds for Cenozoic bipolar glaciation. Nature, 455, 652-656.
50. Derory, J., Scotti-Saintagne, C., Bertocchi, E. et al. (2010). Contrasting relations between diversity of candidate genes and variation of bud burst in natural and segregating populations of European oaks. Heredity, 104, 438-448.
51. Dixon, H. and Joly, J. (1895). On the ascent of sap. Philosophical Transactions of the Royal Society of London B, 186, 563-576.
52. Donnadieu, Y., Goddéris, Y., Ramstein, G., Nédélec, A. and Meert, J. (2004). A snowball Earth climate triggered by continental break-up through changes in runoff. Nature, 428, 303-306.
53. Donoghue, M. J. (2005). Key innovations, convergence, and success: macroevolutionary lessons from plant phylogeny. Paleobiology, 31, 77-93
54. Donoghue, M. J. (2008). A phylogenetic perspective on the distribution of plant diversity. Proceedings of the National Academy of Sciences of the USA, 105, 11549-11555.
55. Edwards, E. J. and Still, C. J. (2008). Climate, phylogeny and the ecological distribution of C4 grasses. Ecology Letters, 11, 266-276.
56. Edwards, E. J., Still, C. J. and Donoghue, M. J. (2007). The relevance of phylogeny to studies of global climate change. Trends in Ecology and Evolution, 22, 243-249.
57. Edwards, M. and Richardson, A. J. (2004). Impact of climate change on marine pelagic phenology and trophic mismatch. Nature, 430, 881-884.
58. Eldrett, J. S., Harding, I. C., Wilson, P. A., Butler, E. and Roberts, A. P. (2007). Continental ice in Greenland during the Eocene and Oligocene. Nature, 446, 176-179.
59. Elith, J. and Leathwick, J. R. (2009). Species distribution models: ecological explanation and prediction across space and time. Annual Review of Ecology, Evolution, and Systematics, 40, 677-697.
60. Elith, J., Graham, C. H., Anderson, R. P. et al. (2006). Novel methods improve prediction of species’ distributions from occurrence data. Ecography, 29, 129-151.
61. Engelbrecht, B. M. J., Comita, L. S., Condit, R. et al. (2007). Drought sensitivity shapes species distribution patterns in tropical forests. Nature, 447, 80.
62. EPICA (2004). Eight glacial cycles from an Antarctic ice core. Nature, 429, 623-628.
63. Eriksson, G., Andersson, S., Eiche, V., Ifver, J. and Persson, A. (1980). Severity index and transfer effects on survival and volume production of Pinus sylvestris in Northern Sweden. Studia Forestalia Suecica, 156, 1-31.
64. Eveno, E., Collada, C., Guevara, M. A. et al. (2008). Contrasting patterns of selection at Pinus pinaster Ait. Drought stress candidate genes as revealed by genetic differentiation analysis. Molecular Biology and Evolution, 25, 417-437.
65. Excoffier, L., Foll, M. and Petit, R. J. (2009). Genetic consequences of range expansions. Annual Review in Ecology, Evolution, and Systematics, 40, 481-501.
66. Fitter, A. H. and Fitter, R. S. R. (2002). Rapid changes in flowering time in British plants. Science, 296, 1689-1691.
67. Graham, C. H., Ferrier, S., Huettman, F., Moritz, C. and Peterson, A. T. (2004a). New developments in museum-based informatics and applications in biodiversity analysis. Trends in Ecology and Evolution, 19, 497-503.
68. Graham, C. H., Ron, S. R., Santos, J. C., Schneider, C. J. and Moritz, C. (2004b). Integrating phylogenetics and environmental niche models to explore speciation mechanisms in dendrobatid frogs. Evolution, 58, 1781-1793.
69. Green, R. E., Collingham, Y. C., Wills, S. G. et al. (2008). Performance of climate envelope models in retrodicting recent changes in bird population size from observed climatic change. Biological Letters, 4, 599-602.
70. Grinnell, J. (1917). The niche-relationships of the California Thrasher. Auk, 34, 427-433.
71. Guisan, A. and Thuiller, W. (2005). Predicting species’ distributions: offering more than simple habitat models. Ecology Letters, 8, 993-1009.
72. Hadly, E. A., Ramakrishnan, U., Chan, Y. L. et al. (2004). Genetic response to climate change: insights from ancient DNA and phylochronology. PLOS Biology, 2, 1-10.
73. Haeger, J. F. (1999). Danaus chrysippus (Linnaeus 1758) en la Península Ibérica: migraciones o Dinámica de metapoblaciones? Shilap, 27, 423-430.
74. Hall, D., Luquez, V., Garcia, V. M. et al. (2007). Adaptive population differentiation in phenology across a latitudinal gradient in European aspen (Populus tremula, L.): a comparison of neutral markers, candidate genes and phenotypic traits. Evolution, 61, 2849-2860.
75. Hannah, L. (2008). Protected areas and climate change. In Year in Ecology and Conservation Biology 2008, ed. R. S. Ostfeld and W. H. Schlesinger. Oxford: Blackwell, pp. 201-212.
76. Hannah, L., Midgley, G., Andelman, S. et al. (2007). Protected area needs in a changing climate. Frontiers in Ecology and the Environment, 5, 131-138.
77. Hannah, L., Dave, R., Lowry, P. P. et al. (2008). Climate change adaptation for conservation in Madagascar. Biology Letters, 4, 590-594.
78. Hardy, C. R. (2006). Reconstructing ancestral ecologies: challenges and possible solutions. Diversity and Distributions, 12, 7-19.
79. Hedges, S. B. and Kumar, S. (2009). Discovering the timetree of life. In The Timetree of Life, ed. S. B. Hedges and S. Kumar. Oxford: Oxford University Press, pp. 3-18.
80. Heikkinen, R. K., Luoto, M., Araújo, M. B. et al. (2006). Methods and uncertainties in bioclimatic envelope modeling under climate change. Progress in Physical Geography, 30, 751-777.
81. Heinrich, H. (1988). Origin and consequences of cyclic ice rafting in the Northeast Atlantic Ocean during the past 130, 000 years. Quaternary Research, 29, 142-152.
82. Hersteinsson, P. and MacDonald, D. W. (1992). Interspecific competition and the geographical distribution of red and arctic foxes Vulpes vulpes and Alopex lagopus. Oikos, 64, 505-515.
83. Hewitt, G. (2000). The genetic legacy of the Quaternary ice ages. Nature, 405, 907-913.
84. Hijmans, R. J. and Graham, C. H. (2006). The ability of climate envelope models to predict the effect of climate change on species ’ distributions. Global Change Biology, 12, 2272-2281.
85. Hodkinson, T. R. and Parnell, J. A. N. (2007). Introduction to the systematics of species rich groups. In Towards the Tree of Life: Systematics of Species Rich Groups, ed. T. R. Hodkinson and J. A. N. Parnell. Boca Raton, FL: CRC Press, pp. 3-20.
86. Hodkinson, T. R., Savolainen, V., Jacobs, S. W. et al. (2007). Supersizing: progress in documenting and understanding grass richness. In Towards the Tree of Life: Systematics of Species Rich Groups, ed. T. R. Hodkinson and J. A. N. Parnell. Boca Raton, FL: CRC Press, pp. 279-298.
87. Hoffman, P. F., Kaufman, A. J., Halverson, G. P. and Schrag, D. P. (1998). A Neoproterozoic snowball earth. Science, 281, 1342-1346.
88. Hole, D. G., Willis, S. G., Pain, D. J. et al. (2009). Projected impacts of climate change on a continent-wide protected area network. Ecology Letters, 12, 420-431.
89. Hole, D. G., Huntley, B., Arinaitwe, J. et al. (in press). Towards a management framework for key biodiversity networks in the face of climatic change. Conservation Biology.
90. Huber, B. T., MacLeod, K. G. and Wing, S. L., eds. (2000). Warm Climates in Earth History. Cambridge: Cambridge University Press.
91. Huber, M. and Caballero, R. (2003). Eocene El Niño: evidence for robust tropical dynamics in the ‘ hothouse ’. Science, 299, 877-881.
92. Huber, M. and Sloan, L. C. (2001). Heat transport, deep waters and thermal gradients: coupled climate simulation of an Eocene greenhouse climate. Geophysical Research Letters, 28, 3841-3884.
93. Huntley, B. (2007a). Climatic Change and the Conservation of European Biodiversity: Towards the Development of Adaptation Strategies. Strasbourg: Council of Europe, Convention of the Conservation of European Wildlife and Natural Habitats.
94. Huntley, B. (2007b). Evolutionary response to climate change? Heredity, 98, 247-248.
95. Huntley, B., Barnard, P., Altwegg, R. et al. (2010). Beyond bioclimatic envelopes: dynamic species’ range and abundance modelling in the context of climatic change. Ecography, 33, 11-16.
96. Hutchinson, G. E. (1957). Concluding remarks. Cold Spring Harbor Symposia on Quantitative Biology, 22, 415-427.
97. Hutchinson, G. E. (1978). An Introduction to Population Ecology. New Haven, CT: Yale University Press.
98. Ingvarsson, P. K., Garcia, M. V., Hall, D., Luquez, V. and Jansson, S. (2006). Clinal variation in phyB2, a candidate gene for day-length-induced growth cessation and bud set, across a latitudinal gradient in European aspen (Populus tremula). Genetics, 172, 1845-1853.
99. Intergovernmental Panel on Climate Change (IPCC) (2007a). Climate Change 2007: Synthesis Report. Contribution of Working Groups I, II and III to the FourThassessment Report of the Intergovernmental Panel on Climate Change, ed. R. K. Pachauri and A. Reisinger, Geneva: IPCC.
100. Intergovernmental Panel on Climate Change (IPCC) (2007b). Climate Change 2007: the Physical Science Basis. Contribution of Working Group I to the FourThassessment Report of the Intergovernmental Panel on Climate Change, ed. S. Solomon, D. Qin, M. Manning et al. Cambridge: Cambridge University Press.
101. International Union for Conservation of Nature and Natural Resources (IUCN) (2001). IUCN Red List Categories and Criteria: Version 3.1. Gland and Cambridge: IUCN.
102. Jablonski, D., Roy, K. and Valentine, J. W. (2006). Out of the tropics: evolutionary dynamics of the latitudinal diversity gradient. Science, 314, 102-106.
103. Jakob, S. S., Martinez-Meyer, E. and Blattner, F. R. (2009). Phylogeographic analyses and paleodistribution modeling indicate pleistocene in situ survival of Hordeum species (Poaceae) in southern Patagonia without genetic or spatial restriction. Molecular Biology and Evolution, 26, 907-923.
104. Juckes, M. N., Allen, M. R., Briffa, K. R. et al. (2007). Millennial temperature reconstruction intercomparison and evaluation. Climate of the Past, 3, 591-609.
105. Jump, A. S. and Peñuelas, J. (2005). Running to stand still: adaptation and the response of plants to rapid climate change. Ecology Letters, 8, 1010-1020.
106. Jump, A. S., Hunt, J. M., Martinez- Izquierdo, J. A. and Peñ uelas, J. (2006). Natural selection and climate change: temperature-linked spatial and temporal trends in gene frequency in Fagus sylvatica. Molecular Ecology, 15, 3469-3480.
107. Jump, A. S., Peñuelas, J., Rico, L. et al. (2008). Simulated climate change provokes rapid genetic change in the Mediterranean shrub Fumana thymifolia. Global Change Biology, 14, 637-643.
108. Jump, A. S., Matyas, C. and Peñuelas, J. (2009). The altitude-for-latitude disparity in the range retractions of woody species. Trends in Ecology and Evolution, 24, 694-701.
109. Keith, D. A., Akçakaya, H. R., Thuiller W. et al. (2008). Predicting extinction risks under climate change: coupling stochastic population models with dynamic bioclimatic habitat models. Biology Letters, 4, 560-563.
110. Kelleher, C. T, Hodkinson, T. R., Kelly, D. L. and Douglas, G. C. (2004). Characterisation of chloroplast DNA haplotypes to reveal the provenance and genetic structure of oaks in Ireland. Forest Ecology and Management, 189, 123-131.
111. Kenrick, P. and Crane, P. R. (1997). The origin and early evolution of plants on land. Nature, 389, 33-39.
112. Kirchner, J. W. and Weil, A. (1990). Delayed biological recovery from extinctions throughout the fossil record. Nature, 404, 177-180.
113. Knoll, A. H. and Lipps, J. H. (1993). Evolutionary history of prokaryotes and protists. In Fossil Prokaryotes and Protists, ed. J. H. Lipps. Boston, MA: Blackwell Scientific Publications, pp. 19-93.
114. Korner, C. (2006). Plant CO2 responses: an issue of definition, time and resource supply. New Phytologist, 172, 393-411.
115. Kozak, K. H., Graham, C. H. and Wiens, J. J. (2008). Integrating GIS-based environmental data into evolutionary biology. Trends in Ecology and Evolution, 23, 141-148.
116. Krutovsky, K. V. and Neale, D. B. (2005). Nucleotide diversity and linkage disequilibrium in cold-hardinessand wood quality-related candidate genes in Douglas fir. Genetics, 171, 2029-2041.
117. Kump, L. R. and Pollard, D. (2008). Amplification of Cretaceous warmth by biological cloud feedbacks. Science, 320, 195.
118. Lenton, T. M. (2004). The coupled evolution of life and atmospheric oxygen. In Evolution on Planet Earth, ed. L. J. Rothschild and A. Lister. Boston, MA: Academic Press.
119. Lenton, T. M., Held, H., Kriegler, E. et al. (2008). Tipping elements in the earth's climate system. Proceedings of the National Academy of Sciences of the USA, 105, 1786-1793.
120. Lovejoy, T. E. and Hannah, L., eds. (2005). Climate Change and Biodiversity. New Haven, CT: Yale University Press.
121. Lowe, A., Harris, S. and Ashton, P. (2004). Ecological Genetics: Design, Analysis, and Application. Oxford: Blackwell.
122. Lowe, J. J. and Walker, M. J. C. (1997). Reconstructing Quaternary Environments. Harlow: Longman.
123. MacArthur, R. H. and Wilson, E. O. (1967). The Theory of Island Biogeography. Princeton, NJ: Princeton University Press.
124. Masson-Delmotte, V., Jouzel, J., Landais, A. et al. (2005). GRIP deuterium excess reveals rapid and orbital-scale changes in Greenland moisture origin. Science, 309, 118-121.
125. Mayhew, P. J., Jenkins, G. B. and Benton, T. G. (2008). A long-term association between global temperature and biodiversity, origination and extinction in the fossil record. Proceedings of the Royal Society of London B, 275, 47-53.
126. McElwain, J. C. (2002). Is the greenhouse theory a fallacy? A paleontological paradox. Palaios, 17, 417-418.
127. McElwain, J. C. and Chaloner, W. G. (1995). Stomatal density and index of fossil plants track atmospheric carbon dioxide in the Paleozoic. Annals of Botany, 76, 389-395.
128. McElwain, J. C. and Punyasena, S. (2007). Mass extinction events and the plant fossil record. Trends in Ecology and Evolution, 22, 548-557.
129. McElwain, J. C., Beerling, D. J. and Woodward, F. I. (1999). Fossil plants and global warming at the Triassic- Jurassic boundary. Science, 285, 1386-1390.
130. McManus, J. F. (2004). A great grand-daddy of ice cores. Nature, 429, 611-612.
131. McMenamin, S. K., Hadly, E. A. and Wright, C. K. (2008). Climatic change and wetland desiccation cause amphibian decline in Yellowstone National Park. Proceedings of the National Academy of Sciences of the USA, 105, 16988-16993.
132. Meehl, G. A., Stocker, T. F., Collins, W. D. et al. (2007). Global climate projections. In Climate Change 2007: the Physical Science Basis. Contribution of Working Group I to the FourThassessment Report of the Intergovernmental Panel on Climate Change, ed. S. Solomon, D. Qin, M. Manning et al. Cambridge: Cambridge University Press, pp. 747-845.
133. Menzel, A., Sparks, T. H., Estrella, N. et al. (2006). European phenological response to climate change matches the warming pattern. Global Change Biology, 12, 1969-1976.
134. Meyer, K. M. and Kump, L. R. (2008). Oceanic euxinia in Earth history: causes and consequences. Annual Review of EarThand Planetary Sciences, 36, 251-288.
135. Møller, A. P., Rubolini, D. and Lehikoinen, E. (2008). Populations of migratory bird species that did not show a phenological response to climate change are declining. Proceedings of the National Academy of Sciences of the USA, 105, 16195-16200.
136. Moritz, C., Patton, J. L., Conroy, C. J. et al. (2008). Impact of a century of climate change on small-mammal communities in Yosemite National Park, USA. Science, 322, 261-264.
137. Myers, N., Mittermeier, R. A., Mittermeier, C. G., da Fonseca, G. A. B. and Kent, J. (2000). Biodiversity hotspots for conservation priorities. Nature, 403, 853-858.
138. Neale, D. B. and Ingvarsson, P. K. (2008). Population, quantitative and comparative genomics of adaptation in forest trees. Current Opinion in Plant Biology, 11, 149-155.
139. Neale, D. B. and Savolainen, O. (2004). Association genetics of complex traits in conifers. Trends in Plant Science, 9, 325-330.
140. North Greenland Ice Core Project (NGRIP) (2004). High-resolution record of Northern Hemisphere climate extending into the last interglacial period. Nature, 431, 147-151.
141. Ogg, J. G., Ogg, G. and Gradstein, F. (2008). Geologic Time Scale. Cambridge: Cambridge University Press.
142. Osborne, C. P. and Freckleton, R. P. (2009). Ecological selection pressures for C4 photosynthesis. Proceedings of the Royal Society of London B, 276, 1753-1760.
143. Pagani, M., Arthur, M. A. and Freeman, K. H. (1999). Miocene evolution of atmospheric carbon dioxide. Paleoceanography, 14, 273-292.
144. Pagani, M., Zachos, J. C., Freeman, K. H., Tipple, B. and Bohaty, S. (2005). Marked decline in atmospheric carbon dioxide concentrations during the Paleogene. Science, 309, 600-603.
145. Pakenham, T. (2003). Remarkable Trees of the World. London: Weidenfeld and Nicolson.
146. Palmer, J. D., Soltis, D. E. and Chase, M. W. (2004). The plant tree of life: an overview and some points of view. American Journal of Botany, 91, 1437-1445.
147. Parmesan, C. (2006). Ecological and evolutionary responses to recent climate change. Annual Review of Ecology, Evolution, and Systematics, 37, 637-669.
148. Parmesan, C. and Yohe, G. (2003). A globally coherent fingerprint of climate change impacts across natural systems. Nature, 421, 37-42.
149. Parmesan, C., Ryrholm, N., Stefanescu, C. et al. (1999). Poleward shifts in geographical ranges of butterfly species associated with regional warming. Nature, 399, 579-583.
150. Pauli, H., Gottfried, M., Reiter, K., Klettner, C. and Grabherr, G. (2006). Signals of range expansions and contractions of vascular plants in the high Alps: observations (1994-2004) at the GLORIA master site Schrankogel, Tyrol, Austria. Global Change Biology, 13, 147-156.
151. Pearman, P. B., Guisan, A., Broennimann, O. and Randin, C. F. (2007). Niche dynamics in space and time. Trends in Ecology and Evolution, 23, 149-158.
152. Pearman, P. B., Randin, C. F., Broennimann, O. et al. (2008). Prediction of plant species’ distributions across six millennia. Ecology Letters, 11, 357-369.
153. Pearson, P. N. and Palmer, M. R. (2000). Atmospheric carbon dioxide concentrations over the past 60 million years. Nature, 406, 695-699.
154. Pearson, R. G. (2006). Climate change and the migration capacity of species. Trends in Ecology and Evolution, 21, 111-113.
155. Pearson, R. G. and Dawson, T. P. (2003). Predicting the impacts of climate change on the distribution of species: are bioclimate envelope models useful? Global Ecology and Biogeography, 12, 361-371.
156. Pearson, R. G., Thuiller, W., Araújo, M. B. et al. (2006). Model-based uncertainty in species range prediction. Journal of Biogeography, 33, 1704-1711.
157. Peters, S. E. (2008). Environmental determinants of extinction selectivity in the fossil record. Nature, 454, 626-629.
158. Peters, S. E. and Foote, M. (2002). Determinants of extinction in the fossil record. Nature, 416, 420-424.
159. Peterson, A. T. (2006). Uses and requirements of ecological niche models and related distributional models. Biodiversity Informatics, 3, 59-72.
160. Peterson, A. T., Soberón, J. and Sánchez-Cordero, V. (1999). Conservation of ecological niches in evolutionary time. Science, 285, 1265-1267.
161. Petit, J. R., Basile, I., Leruyuet, A. et al. (1999). Four climate cycles in Vostok ice core. Nature, 387, 359-360.
162. Petit, R. J., Csaikl, U. M., Bordács, S. et al. (2002). Chloroplast DNA variation in European white oaks: phylogeography and patterns of diversity based on data from over 2600 populations. Forest Ecology and Management, 156, 5-26.
163. Phillips, N. (1956). The general circulation of the atmosphere: a numerical experiment. Quarterly Journal of the Royal Meteorological Society, 82, 123-164.
164. Phillips, S. J., Anderson, R. P. and Schapire, R. E. (2006). Maximum entropy modeling of species geographic distributions. Ecological Modelling, 190, 231-259.
165. Pierrehumbert, R. T. (2004). High levels of atmospheric carbon dioxide necessary for the termination of global glaciation. Nature, 429, 646-649.
166. Poorter, H. and Navas, M. L. (2003). Plant growThand competition at elevated CO2: on winners, losers and functional groups. New Phytologist, 157, 175-198.
167. Pounds, J. A., Fogden, M. P. L. and Campbell, J. H. (1999). Biological responses to climate change on a tropical mountain. Nature, 398, 611-615.
168. Pounds, J. A., Bustamente, M. R., Coloma, L. A. et al. (2006). Widespread amphibian extinctions from epidemic disease driven by global warming. Nature, 439, 161-167.
169. Purvis, A. (1996). Using interspecies phylogenies to test macroevolutionary hypotheses. In New Uses for New Phylogenies, ed. P. H. Harvey, A. J. Leigh Brown, J. Maynard SmiThand S. Nee. Oxford: Oxford University Press, pp. 153-168.
170. Ramakrishnan, U. and Hadly, E. A. (2009). Using phylochronology to reveal cryptic population histories: review and synthesis of 29 ancient DNA studies. Molecular Ecology, 18, 1310-1330.
171. Raup, D. M. and Sepkoski, J. J. (1982). Mass extinctions in the marine fossil record. Science, 215, 1501-1503.
172. Rieseberg, L. H. and Carney, S. E. (1998). Plant hybridization. New Phytologist, 140, 599-624.
173. Rieseberg, L. H., Raymond, O., Rosenthal, D. M. et al. (2003). Major ecological transitions in wild sunflowers facilitated by hybridization. Science, 301, 1211-1216.
174. Roalson, E. H. (2008). C4 photosynthesis: differentiating causation and coincidence. Current Biology, 18, 167-168.
175. Rödder, D. and Lötters, S. (2009). Niche shift or niche conservatism? Climatic properties of the native and invasive range of the Mediterranean Housegecko Hemidactylus turcicus. Global Ecology and Biogeography, 18, 674-687.
176. Rohde, R. A. and Muller, R. A. (2005). Cycles in fossil diversity. Nature, 434, 208-210.
177. Root, T. L., Price, J. T., Hall, K. R., Schneider, S. H. and Rosenzweig, C. (2003). Fingerprints of global warming on wild animals and plants. Nature, 421, 57-60.
178. Rosenzweig, C., Casassa, G., Karoly, D. J. et al. (2007). Assessment of observed changes and responses in natural and managed systems. In Climate Change 2007: Impacts, Adaptation and Vulnerability. Contribution of Working Group II to the FourThassessment Report of the Intergovernmental Panel on Climate Change, ed. M. Parry, O. Canziani, J. Palutikof, P. van der Linden and C. Hanson. Cambridge: Cambridge University Press, pp. 79-131.
179. Rosenzweig, M. L. (1995). Species Diversity in Space and Time. Cambridge: Cambridge University Press.
180. Roy, D. B. and Sparks, T. H. (2000). Phenology of British butterflies and climate change. Global Change Biology, 6, 407-416.
181. Royer, D. L. (2001). Stomatal density and stomatal index as indicators of paleoatmospheric CO2 concentration. Review of Palaeobotany and Palynology, 114, 1-28.
182. Royer, D. L., Berner, R. A., Montañez, I. P., Tibor, N. J. and Beerling, D. J. (2004). CO2 as a primary driver of Phanerozoic climat e. Geological Society of America Today, 14, 4-10.
183. Ruddiman, W. F. (2003). The anthropogenic greenhouse era began thousands of years ago. Climatic Change, 61, 261-293.
184. Ruegg, K., Slabbekoorn, H., Clegg, S. and Smith, T. B. (2006). Divergence in mating signals correlates with ecological variation in the migratory songbird, Swainson's thrush (Catharus ustulatus). Molecular Ecology, 15, 3147-3156.
185. Sage, R. F. (2004). The evolution of C-4 photosynthesis. New Phytologist, 161, 341-370.
186. Schmidt, K. P. (1954). Faunal realms, regions, and provinces. Quarterly Review of Biology, 29, 322-331.
187. Sepkoski, J. J. (2002). A compendium of fossil marine animal genera. Bulletin of American Paleontology, 363, 1-560.
188. Sexton, J. P., McIntyre, P. J., Angert, A. L. and Rice, K. J. (2009). Evolution and ecology of species range limits. Annual Review of Ecology, Evolution, and Systematics, 40, 415-436.
189. Shaviv, N. J. and Veizer, J. (2003). Celestial driver of Phanerozoic climate? Geological Society of America Today, 13, 4-10.
190. Sheehan, P. M. (2001). The Late Ordovician mass extinction. Annual Review of EarThand Planetary Sciences, 29, 331-364.
191. Soberón, J. and Peterson, A. T. (2004). Biodiversity informatics: managing and applying primary biodiversity data. Philosophical Transactions of the Royal Society of London B, 359, 689-698.
192. Soltis, P. S. and Soltis, D. E. (2009). The role of hybridization in plant speciation. Annual Review of Plant Biology, 60, 561-588.
193. Steffensen, J. P., Andersen, K. K., Bigler, M. et al. (2008). High-resolution Greenland ice core data show abrupt climate change happens in few years. Science, 321, 680-684.
194. Stokstad, E. (2001). Myriad ways to reconstruct past climate. Science, 292, 658-659.
195. Sutherland, W. J. (2006). Predicting the ecological consequences of environmental change: a review of the methods. Journal of Applied Ecology, 43, 599-616.
196. Svensmark, H. and Calder, N. (2007). The Chilling Stars: a New Theory of Climate Change. Cambridge: Icon Books.
197. Swenson, N. G. (2006). GIS-based niche models reveal unifying climatic mechanisms that maintain the location of avian hybrid zones in a NorThamerican suture zone. Journal of Evolutionary Biology, 19, 717-725.
198. Thomas, C. D. and Lennon, J. J. (1999). Birds extend their ranges northwards. Nature, 399, 213.
199. Thomas, C. D., Cameron, A., Green, R. E. et al. (2004). Extinction risk from climate change. Nature, 427, 145-148.
200. Thomas, C. D., Franco, A. M. A. and Hill, J. K. (2006). Range retractions and extinction in the face of climate warming. Trends in Ecology and Evolution, 21, 415-416.
201. Thuiller, W. (2004). Patterns and uncertainties of species’ range shifts under climate change. Global Change Biology, 10, 2020-2027.
202. Thuiller, W., Albert, C., Araú jo, M. B. et al. (2008). Predicting global change impacts on plant species’ distributions: future challenges. Perspectives in Plant Ecology, Evolution and Systematics, 9, 137-152.
203. Trenberth, K. E., Jones, P. D., Ambenje, P. et al. (2007). Observations: surface and atmospheric climate change. In Climate Change 2007: the Physical Science Basis. Contribution of Working Group I to the FourThassessment Report of the Intergovernmental Panel on Climate Change, ed. S. Solomon, D. Qin, M. Manning et al. Cambridge: Cambridge University Press, pp. 235-336.
204. Tyndall, J. (1865). Heat Considered as a Mode of Motion, 2nd edn. London: Longman Green.
205. van de Schootbrugge, B., Quan, T. M., Lindström, S. et al. (2009). Floral changes across the Triassic/Jurassic boundary linked to flood basalt volcanism. Nature Geoscience, 2, 589-594.
206. van Herk, C. M., Aptroot, A. and van Dobben, H. F. (2002). Long-term monitoring in the Netherlands suggests that lichens respond to global warming. Lichenologist, 34, 141-154.
207. van Valen, L. (1973). A new evolutionary law. Evolutionary Theory, 1, 1-30.
208. Veizer, J., Godderis, Y. and François, L. M. (2000). Evidence for decoupling of atmospheric CO2 and global climate during the Phanerozoic eon. Nature, 408, 698-701.
209. Vila, M., Weber, E. and Antonio, C. M. D. (2000). Conservation implications of invasion by plant hybridization. Biological Invasions, 2, 207-217.
210. Wake, D. B., Hadley, E. A., and Ackerly, D. D. (2009). Biogeography, changing climates, and niche evolution. Proceedings of the National Academy of Sciences of the USA, 106, 19631-19636.
211. Wallace, A. R. (1869). The Malay Archipelago; The Land of the Orangutan and the Bird of Paradise; A Narrative of Travel With Studies of Man and Nature. London: Macmillan.
212. Wallace, A. R. (1876). The Geographical Distribution of Animals; WiTha Study of the Relations of Living and Extinct Faunas as Elucidating the Past Changes of the Earth's Surface. London: Macmillan.
213. Wallace, A. R. (1880). Island Life: Or, The Phenomena and Causes of Insular Faunas and Floras, Including a Revision and Attempted Solution of the Problem of Geological Climates. London: Macmillan.
214. Walther, G. R., Post, E., Convey, P. et al. (2002). Ecological responses to recent climate change. Nature, 416, 389-395.
215. Wiens, J. J. and Graham, C. H. (2005). Niche conservatism: integrating evolution, ecology, and conservation biology. Annual Review of Ecology and Systematics, 36, 519-539.
216. Wignall, P. B. (2005). The link between large igneous province eruptions and mass extinctions. Elements, 1, 293-297.
217. Williams, J. W. and Jackson, S. T. (2007). Novel climates, no-analog communities, and ecological surprises. Frontiers in Ecology and the Environment, 5, 475-482.
218. Williams, J. W., Jackson, S. T. and Kutzbach, J. E. (2007). Projected distributions of novel and disappearing climates by 2100 AD. Proceedings of the National Academy of Sciences of the USA, 104, 5738-5742.
219. Willig, M. R., Kaufmann, D. M. and Stevens, R. D. (2003). Latitudinal gradients of biodiversity: pattern, process, scale and synthesis. Annual Review of Ecology, Evolution, and Systematics, 34, 273-309.
220. Willis, K. J. and McElwain, J. C. (2002). The Evolution of Plants. Oxford: Oxford University Press.
221. Wilson, E. O. (1992). The Diversity of Life. Cambridge, MA: Harvard University Press.
222. Wilson, J. W, Gutiérrez, D., Martinez, D., Agudo, R. and Monserrat, V. J. (2005). Changes to the elevational limits and extent of species ranges associated with climate change. Ecological Letters, 8, 1138-1146.
223. Wnuk, C. (1996). The development of floristic provinciality during the Middle and Late Paleozoic. Review of Palaeobotany and Palynology, 90, 6-40.
224. Woodward, F. I. (1987). Stomatal numbers are sensitive to increase in CO2 from pre-industrial levels. Nature, 327, 617-618.
225. Woodward, F. I. and Kelly, C. K. (2008). Responses of global plant biodiversity capacity to changes in carbon dioxide concentration and climate. Ecology Letters, 11, 1229-1237.
226. Wunsch, C. (2004). Quantitative estimate of the Milankovitch-forced contribution to observed Quaternary climate change. Quarterly Science Reviews, 23, 1001-1012.
227. Yesson, C. and Culham, A. (2006a). A phyloclimatic study of Cyclamen. BMC Evolutionary Biology, 6, 72.
228. Yesson, C. and Culham, A. (2006b). Phyloclimatic modelling: combining phylogenetics and bioclimatic modelling. Systematic Biology, 55, 785-802.
229. Zachos, J. C., Pagani, M., Sloan, L., Thomas, E. and Billups, K. (2001). Trends, rythms and aberrations in global climate 65 Ma to present. Science, 292, 686-693.
230. Zachos, J. C., Dickens, G. R. and Zeebe, R. E. (2008). An early Cenozoic perspective on greenhouse warming and carboncycle dynamics. Nature, 451, 279-283.
231. Zeebe, R. E., Zachos, J. C. and Dickens, G. R. (2009). Carbon dioxide forcing alone insufficient to explain Palaeocene- Eocene Thermal Maximum warming. Nature Geoscience, 2, 576-580.
232. Ziegler, A.M., Eshel, G., McAllister, R. et al. (2003). Tracing the tropics across land and sea: Permian to presen t. Lethaia, 36, 227-254.