-
2
-
-
0035983533
-
Aternative splicing isoform of tau protein kinase I/glycogen synthase kinase 3β
-
DOI 10.1046/j.1471-4159.2002.00918.x
-
Mukai F, Ishiguro K, Sano Y, Fujita SC (2002) Alternative splicing isoform of tau protein kinase I/glycogen synthase kinase 3 beta. J Neurochem 81:1073-1083 (Pubitemid 34809290)
-
(2002)
Journal of Neurochemistry
, vol.81
, Issue.5
, pp. 1073-1083
-
-
Mukai, F.1
Ishiguro, K.2
Sano, Y.3
Fujita, S.C.4
-
3
-
-
84861230568
-
Glycogen synthase kinase 3 is a potential drug target for african trypanosomiasis therapy
-
Plyte SE, Hughes K, Nikolakaki E, Pulve BJ, Woodgett JR (1999) Glycogen synthase kinase 3 is a potential drug target for african trypanosomiasis therapy. Biochem Biophys Acta 1114:147-162
-
(1999)
Biochem Biophys Acta
, vol.1114
, pp. 147-162
-
-
Plyte, S.E.1
Hughes, K.2
Nikolakaki, E.3
Pulve, B.J.4
Woodgett, J.R.5
-
4
-
-
0035413614
-
Glycogen synthase kinase-3: Properties, functions, and regulation
-
DOI 10.1021/cr000110o
-
Ali A, Hoeflich KA, Woodgett JR (2001) Glycogen synthase kinase-3: Properties, functions, and regulation. Chem Rev 101:2527-2540 (Pubitemid 35373033)
-
(2001)
Chemical Reviews
, vol.101
, Issue.8
, pp. 2527-2540
-
-
Ali, A.1
Hoeflich, K.P.2
Woodgett, J.R.3
-
5
-
-
4344584730
-
WNT and β-catenin signalling: Diseases and therapies
-
DOI 10.1038/nrg1427
-
Moon RT, Kohn RD, De Ferrari GV, Kaykas A (2004) WNT and beta-catenin signalling: diseases and therapies. Nat Rev Genet 5:691-701 (Pubitemid 39150127)
-
(2004)
Nature Reviews Genetics
, vol.5
, Issue.9
, pp. 691-701
-
-
Moon, R.T.1
Kohn, A.D.2
De Ferrari, G.V.3
Kaykas, A.4
-
6
-
-
8744271562
-
Glycogen synthase kinase-3 in insulin and Wnt signalling: A double-edged sword?
-
DOI 10.1042/BST0320803
-
Patel S, Doble B, Woodgett JR (2004) Glycogen synthase kinase- 3 in insulin and Wnt signalling: a double-edged sword? Biochem Soc Trans 32:803-808 (Pubitemid 39524384)
-
(2004)
Biochemical Society Transactions
, vol.32
, Issue.5
, pp. 803-808
-
-
Patel, S.1
Doble, B.2
Woodgett, J.R.3
-
7
-
-
10644281006
-
Regulatory role of glycogen synthase kinase 3 for transcriptional activity of ADD1/SREBP1c
-
Kim KH, Song MJ, Yoo EJ, Choe SS, Park SD, Kim KB (2004) Regulatory role of glycogen synthase kinase 3 for transcriptional activity of ADD1/SREBP1c. J Biol Chem 279:5199-52006
-
(2004)
J Biol Chem
, vol.279
, pp. 5199-52006
-
-
Kim, K.H.1
Song, M.J.2
Yoo, E.J.3
Choe, S.S.4
Park, S.D.5
Kim, K.B.6
-
8
-
-
0033499747
-
Glycogen synthase kinase 3 is an insulin-regulated C/EBPα kinase
-
Ross SE, Erickson RL, Hemati N, Macdougald OA (1999) Glycogen synthase kinase 3 is an insulin regulated C/EBPα kinase. Mol Cell Biol 19:8433-8441 (Pubitemid 30414037)
-
(1999)
Molecular and Cellular Biology
, vol.19
, Issue.12
, pp. 8433-8441
-
-
Ross, S.E.1
Erickson, R.L.2
Hemati, N.3
MacDougald, O.A.4
-
9
-
-
0038044650
-
Glycogen synthase kinase 3β-mediated apoptosis of primary cortical astrocytes involves inhibition of nuclear factor κB signaling
-
DOI 10.1128/MCB.23.13.4649-4662.2003
-
Panchez JF, Sniderhan LF, Williamson AL, Fan S, Chakraborty- Sett S, Maggirwar SB (2003) Glycogen synthase kinase 3β- mediated apoptosis of primary cortical astrocytes involves inhibition of nuclear factor κB signaling. Mol Cell Biol 23:4649-4662 (Pubitemid 36734753)
-
(2003)
Molecular and Cellular Biology
, vol.23
, Issue.13
, pp. 4649-4662
-
-
Sanchez, J.F.1
Sniderhan, L.F.2
Williamson, A.L.3
Fan, S.4
Chakraborty-Sett, S.5
Maggirwar, S.B.6
-
10
-
-
0035863188
-
Decreased nuclear β-catenin, tau hyperphosphorylation and neurodegeneration in GSK-3β conditional transgenic mice
-
DOI 10.1093/emboj/20.1.27
-
Lucas JJ, Hernandez F, Gomez-Ramos P, Moran MA, Hen R, Avila J (2001) Decreased nuclear δ-catenin, tau hyperphosphorylation and neurodegeneration in GSK-3β conditional transgenic mice. EMBO J 20:27-39 (Pubitemid 32099099)
-
(2001)
EMBO Journal
, vol.20
, Issue.1-2
, pp. 27-39
-
-
Lucas, J.J.1
Hernandez, F.2
Gomez-Ramos, P.3
Moran, M.A.4
Hen, R.5
Avila, J.6
-
11
-
-
33847123499
-
Glycogen synthase kinase-3 in neurodegeneration and neuroprotection: Lessons from Lithium
-
DOI 10.2174/156720507779939832
-
Aghdam SY, Barger SW (2007) Glycogen synthase kinase-3 in neurodegeneration and neuroprotection: lessons from lithium. Curr Alzheimer Res 4:21-31 (Pubitemid 46293881)
-
(2007)
Current Alzheimer Research
, vol.4
, Issue.1
, pp. 21-31
-
-
Aghdam, S.Y.1
Barger, S.W.2
-
12
-
-
0036090823
-
Glycogen synthase kinase 3: An emerging therapeutic target
-
Eldar-Finkolman H (2002) Glycogen synthase kinase 3: an emerging therapeutic target. Trends Mol Med 8:126-132
-
(2002)
Trends Mol Med
, vol.8
, pp. 126-132
-
-
Eldar-Finkolman, H.1
-
13
-
-
55749106048
-
The role of glycogen synthase kinase 3 in the early stages of Alzheimer's' disease
-
Hernandez F, Avila J (2008) The role of glycogen synthase kinase 3 in the early stages of Alzheimer's' disease. FEBS Lett 582:3848-3854
-
(2008)
FEBS Lett
, vol.582
, pp. 3848-3854
-
-
Hernandez, F.1
Avila, J.2
-
14
-
-
0036799220
-
Inhibitors of glycogen synthase kinase-3: Future therapy for unmet medical needs?
-
DOI 10.1517/13543776.12.10.1527
-
Dorronsoro I, Castro A, Martinez A (2002) Inhibitors of glycogen synthase kinase-3: future therapy for unmate medical needs? Expert Opin Ther Pat 12:1527-1536 (Pubitemid 35175213)
-
(2002)
Expert Opinion on Therapeutic Patents
, vol.12
, Issue.10
, pp. 1527-1536
-
-
Dorronsoro, I.1
Castro, A.2
Martinez, A.3
-
15
-
-
4344619713
-
Pharmacological inhibitors of glycogen synthase kinase 3
-
DOI 10.1016/j.tips.2004.07.006, PII S0165614704002068
-
Meijer L, Flajolet M, Greengard P (2004) Pharmacological inhibitors of glycogen synthase kinase 3. Trends Pharmacol Sci 25:471-480 (Pubitemid 39149703)
-
(2004)
Trends in Pharmacological Sciences
, vol.25
, Issue.9
, pp. 471-480
-
-
Meijer, L.1
Flajolet, M.2
Greengard, P.3
-
16
-
-
33750054677
-
Differential roles of glycogen synthase kinase-3 isoforms in the regulation of transcriptional activation
-
Liang MH, Chuang DM (2006) Differential roles of glycogen synthase kinase-3 isoforms in the regulation of transcriptional activation. J Biol Chem 281:30479-30484
-
(2006)
J Biol Chem
, vol.281
, pp. 30479-30484
-
-
Liang, M.H.1
Chuang, D.M.2
-
17
-
-
0034306450
-
Specificity and mechanism of action of some commonly used protein kinase inhibitors
-
Davies SP, Reddy H, Caivano M, Cohen P (2000) Specificity and mechanism of action of some commonly used protein kinase inhibitors. Biochem J 351:95-105
-
(2000)
Biochem J
, vol.351
, pp. 95-105
-
-
Davies, S.P.1
Reddy, H.2
Caivano, M.3
Cohen, P.4
-
18
-
-
0141645621
-
Structural characterization of the GSK-3β active site using selective and non-selective ATP-mimetic inhibitors
-
DOI 10.1016/j.jmb.2003.08.031
-
Bertrand JA, Thieffine S, Vulpetti A, Cristiani C, Valsasina B, Knapp S, Kalisz HM, Flocco M (2003) Structural characterization of the GSK-3beta active site using selective and non-selective ATP-mimetic inhibitors. J Mol Biol 333:393-407 (Pubitemid 37188580)
-
(2003)
Journal of Molecular Biology
, vol.333
, Issue.2
, pp. 393-407
-
-
Bertrand, J.A.1
Thieffine, S.2
Vulpetti, A.3
Cristiani, C.4
Valsasina, B.5
Knapp, S.6
Kalisz, H.M.7
Flocco, M.8
-
19
-
-
33846899405
-
Molecular recognition of protein kinase binding pockets for design of potent and selective kinase inhibitors
-
Lio JLJ (2007) Molecular recognition of protein kinase binding pockets for design of potent and selective kinase inhibitors. J Med Chem 50:409-424
-
(2007)
J Med Chem
, vol.50
, pp. 409-424
-
-
Lio, J.L.J.1
-
20
-
-
51849144627
-
Knowledge based prediction of ligand binding modes and rational inhibitor design for kinase drug discovery
-
Ghose AK, Herbertz T, Pippin DA, Salvino JM, Mallamo JP (2008) Knowledge based prediction of ligand binding modes and rational inhibitor design for kinase drug discovery. J Med Chem 51:5149-5171
-
(2008)
J Med Chem
, vol.51
, pp. 5149-5171
-
-
Ghose, A.K.1
Herbertz, T.2
Pippin, D.A.3
Salvino, J.M.4
Mallamo, J.P.5
-
21
-
-
0029860018
-
Crystal structures of catalytic subunit of cAMP-dependent protein kinase in complex with isoquinolinesulfonyl protein kinase inhibitors H7, H8, and H89
-
DOI 10.1074/jbc.271.42.26157
-
Engh RA, Girod A, Kinzel V, Huber R, Bossemeyer D (1996) Crystal structures of catalytic subunit of cAMP-dependent protein kinase in complex with isoquinolinesulfonyl protein kinase inhibitors H7, H8, and H89 structural implications for selectivity. J Biol Chem 271:26157-26164 (Pubitemid 26347460)
-
(1996)
Journal of Biological Chemistry
, vol.271
, Issue.42
, pp. 26157-26164
-
-
Engh, R.A.1
Girod, A.2
Kinzel, V.3
Huber, R.4
Bossemeyer, D.5
-
22
-
-
33847791170
-
The many faces of H89: A review
-
DOI 10.1111/j.1527-3466.2006.00261.x
-
Lochner A, Moolman JA (2006) The many faces of H89: a review. Cardiovasc Drug Rev 24:261-274 (Pubitemid 46435008)
-
(2006)
Cardiovascular Drug Reviews
, vol.24
, Issue.3-4
, pp. 261-274
-
-
Lochner, A.1
Moolman, J.A.2
-
23
-
-
0032530336
-
Structural basis of inhibitor selectivity in MAP kinases
-
Wang Z, Canagarajah BJ, Boehm JC, Kassisa S, Cobb MH, Young PR, Abdel-Meguid S, Adams JL, Goldsmith EJ (1998) Structural basis of inhibitor selectivity in MAP kinases. Structure 6:1117-1128 (Pubitemid 28434115)
-
(1998)
Structure
, vol.6
, Issue.9
, pp. 1117-1128
-
-
Wang, Z.1
Canagarajah, B.J.2
Boehm, J.C.3
Kassisa, S.4
Cobb, M.H.5
Young, P.R.6
Abdel-Meguid, S.7
Adams, J.L.8
Goldsmith, E.J.9
-
24
-
-
0028605318
-
A protein kinase involved in the regulation of inflammatory cytokine biosynthesis
-
Lee JC, Laydon JT, McDonnell PC, Gallagher TF, Kumar S, Green D, McNulty MJ, Blumenthal JR, Keys SW, JE Land vatter, Strickler MM, McLaughlin IR, Siemens SM, Fisher GP, Livi JR, White JL, Younget A, Younget PR (1994) A protein kinase involved in the regulation of inflammatory cytokine biosynthesis. Nature 372:739-746
-
(1994)
Nature
, vol.372
, pp. 739-746
-
-
Lee, J.C.1
Laydon, J.T.2
McDonnell, P.C.3
Gallagher, T.F.4
Kumar, S.5
Green, D.6
McNulty, M.J.7
Blumenthal, J.R.8
Keys, S.W.9
Land Vatter, J.E.10
Strickler, M.M.11
McLaughlin, I.R.12
Siemens, S.M.13
Fisher, G.P.14
Livi, J.R.15
White, J.L.16
Younget, A.17
Younget, P.R.18
-
25
-
-
0028988138
-
SB 203580 is a specific inhibitor of a MAP kinase homologue which is stimulated by cellular stresses and interleukin-1
-
Cuenda A, Rouse J, Doza YN, Meier R, Cohen P, Gallaghaer TF, Young PR, Lee JC (1994) SB 203580 is a specific inhibitor of a MAP kinase homologue which is stimulated by cellular stresses and interleukin-1. FEBS Lett 364:229-233
-
(1994)
FEBS Lett
, vol.364
, pp. 229-233
-
-
Cuenda, A.1
Rouse, J.2
Doza, Y.N.3
Meier, R.4
Cohen, P.5
Gallaghaer, T.F.6
Young, P.R.7
Lee, J.C.8
-
26
-
-
0035171919
-
Kinetics of small molecule inhibitor binding to p38 kinase
-
DOI 10.1046/j.0014-2956.2001.02512.x
-
Thurmond RL, Wadsworth SA, Schafer PH, Zivin RA, Siekierka JJ (2001) Kinetics of small molecule inhibitor binding to p38 kinase. Eur J Biochem 268:5747-5754 (Pubitemid 33079307)
-
(2001)
European Journal of Biochemistry
, vol.268
, Issue.22
, pp. 5747-5754
-
-
Thurmond, R.L.1
Wadsworth, S.A.2
Schafer, P.H.3
Zivin, R.A.4
Siekierka, J.J.5
-
27
-
-
33644857442
-
The structure of dimeric ROCK I reveals the mechanism for ligand selectivity
-
DOI 10.1074/jbc.M508847200
-
Jacobs M, Hayakawa K, Swenson L, Bellon S, Fleming M, Taslimi P, Dora J (2006) The structure of dimeric ROCK I reveals the mechanism for ligand selectivity. J Biol Chem 281:260-268 (Pubitemid 43671185)
-
(2006)
Journal of Biological Chemistry
, vol.281
, Issue.1
, pp. 260-268
-
-
Jacobs, M.1
Hayakawa, K.2
Swenson, L.3
Bellon, S.4
Fleming, M.5
Taslimi, P.6
Doran, J.7
-
28
-
-
0034017744
-
Pharmacological properties of Y-27632, a specific inhibitor of Rho- associated kinases
-
Ishizaki T, Uehata M, Tamechika I, Keel J, Nonomura K, Maekawa M, Narumiya S (2000) Pharmacological properties of Y-27632, a specific inhibitor of Rho-associated kinases. Mol Pharmacol 57:976-983 (Pubitemid 30253382)
-
(2000)
Molecular Pharmacology
, vol.57
, Issue.5
, pp. 976-983
-
-
Ishizaki, T.1
Uehata, M.2
Tamechika, I.3
Keel, J.4
Nonomura, K.5
Maekawa, M.6
Narumiya, S.7
-
29
-
-
0344234281
-
Protein Kinase a in Complex with Rho-Kinase Inhibitors Y-27632, Fasudil, and H-1152P: Structural Basis of Selectivity
-
DOI 10.1016/j.str.2003.11.002
-
Breitenlechner C, Gaßel M, Hidaka H, Kinzel V, Huber R, Engh RA, Bossemeyer D (2003) Protein kinase A in complex with Rhokinase inhibitors Y-27632, Fasudil, and H-1152P: structural basis of selectivity. Structure 11:1595-1607 (Pubitemid 37510358)
-
(2003)
Structure
, vol.11
, Issue.12
, pp. 1595-1607
-
-
Breitenlechner, C.1
Gassel, M.2
Hidaka, H.3
Kinzel, V.4
Huber, R.5
Engh, R.A.6
Bossemeyer, D.7
-
30
-
-
10744233962
-
Interactions of LY333531 and Other Bisindolyl Maleimide Inhibitors with PDK1
-
DOI 10.1016/S0969-2126(04)00007-3
-
Komander D, Kular GS, Schuttelkopf AW, Deak M, Prakash KRC, Bain J, Elliott M, Garrido-Franco M, Kozikowski AP, Alessi DR, van Aalten DMF (2004) Interactions of LY333531 and other bisindolyl maleimide inhibitors with PDK1. Structure 12:215-226 (Pubitemid 38224545)
-
(2004)
Structure
, vol.12
, Issue.2
, pp. 215-226
-
-
Komander, D.1
Kular, G.S.2
Schuttelkopf, A.W.3
Deak, M.4
Prakash, K.R.C.5
Bain, J.6
Elliott, M.7
Garrido-Franco, M.8
Kozikowski, A.P.9
Alessi, D.R.10
Van Aalten, D.M.F.11
-
31
-
-
33751237378
-
Can MM-PBSA calculations predict the specificities of protein kinase inhibitors?
-
DOI 10.1002/jcc.20534
-
Page SC, Bates PA (2006) Can MM-PBSA calculations predict the specificities of protein kinase inhibitors? J Comput Chem 27:1990-2007 (Pubitemid 44787017)
-
(2006)
Journal of Computational Chemistry
, vol.27
, Issue.16
, pp. 1990-2007
-
-
Page, C.S.1
Bates, P.A.2
-
32
-
-
0034521981
-
Calculating structures and free energies of complex molecules: Combining molecular mechanics and continuum models
-
DOI 10.1021/ar000033j
-
Kollman PA, Massova I, Reyes C, Kuhn B, Huo S, Chong L, Lee M, Lee T, Duan Y, Wang W, Donini O, Cieplak P, Srinivasan J, Case DA, Cheatham TE (2000) Calculating structures and free energies of complex molecules: combining molecular mechanics and continuum models. Acc Chem Res 33:889-897 (Pubitemid 32056774)
-
(2000)
Accounts of Chemical Research
, vol.33
, Issue.12
, pp. 889-897
-
-
Kollman, P.A.1
Massova, I.2
Reyes, C.3
Kuhn, B.4
Huo, S.5
Chong, L.6
Lee, M.7
Lee, T.8
Duan, Y.9
Wang, W.10
Donini, O.11
-
36
-
-
44049100186
-
Dynamics in the p38α MAP Kinase-SB203580 complex observed by liquid state NMR
-
Honndorf VS, Coudevylle N, Laufer S, Becker S, Griesinger C (2008) Dynamics in the p38α MAP Kinase-SB203580 complex observed by liquid state NMR. Angew Chem Int Ed 47:3548-3551
-
(2008)
Angew Chem Int Ed
, vol.47
, pp. 3548-3551
-
-
Honndorf, V.S.1
Coudevylle, N.2
Laufer, S.3
Becker, S.4
Griesinger, C.5
-
37
-
-
0344234281
-
Protein Kinase a in Complex with Rho-Kinase Inhibitors Y-27632, Fasudil, and H-1152P: Structural Basis of Selectivity
-
DOI 10.1016/j.str.2003.11.002
-
Breitenlechner C, Gaßel M, Hidaka H, Kinzel V, Huber R, Engh RA, Bossemeyer D (2003) Protein kinase A in complex with Rhokinase inhibitors Y-27632, Fasudil, and H-1152P: structural basis of selectivity. Structure 11:1595-1607 (Pubitemid 37510358)
-
(2003)
Structure
, vol.11
, Issue.12
, pp. 1595-1607
-
-
Breitenlechner, C.1
Gassel, M.2
Hidaka, H.3
Kinzel, V.4
Huber, R.5
Engh, R.A.6
Bossemeyer, D.7
-
38
-
-
33846392840
-
Microscopic modes and free energies of 3-phosphoinositide-dependent kinase-1 (PDK1) binding with celecoxib and other inhibitors
-
DOI 10.1021/jp065207e
-
AbdulHameed MDM, Hamza A, Zhan CG (2006) Microscopic modes and free energies of 3-phosphoinositide-dependent kinase-1 (PDK1) binding with celecoxib and other inhibitors. J Phys Chem B 110:26365-26374 (Pubitemid 46133359)
-
(2006)
Journal of Physical Chemistry B
, vol.110
, Issue.51
, pp. 26365-26374
-
-
AbdulHameed, M.D.M.1
Hamza, A.2
Zhan, C.-G.3
-
39
-
-
42949174603
-
Combining docking, molecular dynamics and the linear interaction energy method to predict binding modes and affinities for non-nucleoside inhibitors to HIV-1 reverse transcriptase
-
DOI 10.1021/jm7012198
-
Carlsson J, Boukharta L, Aqvist J (2008) Combining docking, molecular dynamics, and the linear interaction energy method to predict binding modes and affinities for non-nucleoside inhibitors to HIV-1 reverse transcriptase. J Med Chem 51:2648-2656 (Pubitemid 351620786)
-
(2008)
Journal of Medicinal Chemistry
, vol.51
, Issue.9
, pp. 2648-2656
-
-
Carlsson, J.1
Boukharta, L.2
Aqvist, J.3
-
40
-
-
0034811498
-
Combining docking, molecular dynamics, and the linear interaction energy method to predict binding modes and affinities for non-nucleoside inhibitors to HIV-1 reverse transcriptase
-
Wang J, Morin P, Wang W, Kollman PA (2001) Combining docking, molecular dynamics, and the linear interaction energy method to predict binding modes and affinities for non-nucleoside inhibitors to HIV-1 reverse transcriptase. J Am Chem Soc 123:5221-5230
-
(2001)
J Am Chem Soc
, vol.123
, pp. 5221-5230
-
-
Wang, J.1
Morin, P.2
Wang, W.3
Kollman, P.A.4
-
41
-
-
0041919542
-
Improved protein-ligand docking using GOLD
-
DOI 10.1002/prot.10465
-
Verdonk ML, Cole JC, Hartshorn MJ, Murray CW, Taylor RD (2003) Improved protein-ligand docking using GOLD. Proteins 52:609-623 (Pubitemid 37034158)
-
(2003)
Proteins: Structure, Function and Genetics
, vol.52
, Issue.4
, pp. 609-623
-
-
Verdonk, M.L.1
Cole, J.C.2
Hartshorn, M.J.3
Murray, C.W.4
Taylor, R.D.5
-
43
-
-
34247186195
-
-
University of California, San Francisco
-
Case DA, Darden TA, Cheatham TE III, Simmerling CL, Wang J, Duke RE, Luo R, Merz KM, Pearlman DA, Crowley M, Walker RC, Zhang W, Wang B, Hayik S, Roitberg A, Seabra G, Wong KF, Paesani F, Wu X, Brozell S, Tsui V, Gohlke H, Yang L, Tan C, Mongan J, Hornak V, Cui G, Beroza P, Mathews DH, Schafmeister C, Ross WS, Kollman PA (2006) AMBER 9. University of California, San Francisco
-
(2006)
AMBER 9.
-
-
Case, D.A.1
Darden, T.A.2
Cheatham, T.E.I.I.I.3
Simmerling, C.L.4
Wang, J.5
Duke, R.E.6
Luo, R.7
Merz, K.M.8
Pearlman, D.A.9
Crowley, M.10
Walker, R.C.11
Zhang, W.12
Wang, B.13
Hayik, S.14
Roitberg, A.15
Seabra, G.16
Wong, K.F.17
Paesani, F.18
Wu, X.19
Brozell, S.20
Tsui, V.21
Gohlke, H.22
Yang, L.23
Tan, C.24
Mongan, J.25
Hornak, V.26
Cui, G.27
Beroza, P.28
Mathews, D.H.29
Schafmeister, C.30
Ross, W.S.31
Kollman, P.A.32
more..
-
45
-
-
0031552362
-
Development and validation of a genetic algorithm for flexible docking
-
DOI 10.1006/jmbi.1996.0897
-
Jones G, Willett P, Glen RC, Leach AR, Taylor R (1997) Development and validation of a genetic algorithm for flexible docking. J Mol Biol 267:727-748 (Pubitemid 27170693)
-
(1997)
Journal of Molecular Biology
, vol.267
, Issue.3
, pp. 727-748
-
-
Jones, G.1
Willett, P.2
Glen, R.C.3
Leach, A.R.4
Taylor, R.5
-
46
-
-
0028854034
-
Molecular recognition of receptor sites using a genetic algorithm with a description of desolvation
-
Jones G, Willett P, Glen RC (1995) Molecular recognition of receptor sites using a genetic algorithm with a description of desolvation. J Mol Biol 245:43-53
-
(1995)
J Mol Biol
, vol.245
, pp. 43-53
-
-
Jones, G.1
Willett, P.2
Glen, R.C.3
-
47
-
-
26444586139
-
Modeling water molecules in protein-ligand docking using GOLD
-
DOI 10.1021/jm050543p
-
Verdonk ML, Chessari G, Cole JC, Hartshorn MJ, Murrary CW, Nissink JWM, Taylor RD, Taylor R (2005) Modeling water molecules in protein - ligand docking using GOLD. J Med Chem 48:6504-6515 (Pubitemid 41429002)
-
(2005)
Journal of Medicinal Chemistry
, vol.48
, Issue.20
, pp. 6504-6515
-
-
Verdonk, M.L.1
Chessari, G.2
Cole, J.C.3
Hartshorn, M.J.4
Murray, C.W.5
Nissink, J.W.M.6
Taylor, R.D.7
Taylor, R.8
-
49
-
-
33645961739
-
A smooth particle mesh Ewald method
-
Essmann U, Perera L, Berkowitz ML, Darden TA, Lee H, Pederson LG (1995) A smooth particle mesh Ewald method. J Chem Phys 103:8577S-8593S
-
(1995)
J Chem Phys
, vol.103
-
-
Essmann, U.1
Perera, L.2
Berkowitz, M.L.3
Darden, T.A.4
Lee, H.5
Pederson, L.G.6
-
50
-
-
33646940952
-
Numerical integration of the Cartesian equations of motion of a system with constraints: Molecular dynamics of n-alkanes
-
Ryckaert JP, Cicotti G, Berendsen HC (1977) Numerical integration of the Cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes. J Comput Phys 23:327-341
-
(1977)
J Comput Phys
, vol.23
, pp. 327-341
-
-
Ryckaert, J.P.1
Cicotti, G.2
Berendsen, H.C.3
-
51
-
-
0036890178
-
Fast, efficient generation of high-quality atomic charges. AM1-BCC model: II. Parameterization and validation
-
DOI 10.1002/jcc.10128
-
Jakalian A, Jack DB, Bayly CI (2002) Fast, efficient generation of high-quality atomic charges. AM1-BCC model: II. Parameterization and validation. J Comput Chem 23:1623-1641 (Pubitemid 35330860)
-
(2002)
Journal of Computational Chemistry
, vol.23
, Issue.16
, pp. 1623-1641
-
-
Jakalian, A.1
Jack, D.B.2
Bayly, C.I.3
-
52
-
-
33748538349
-
Automatic atom type and bond type perception in molecular mechanical calculations
-
DOI 10.1016/j.jmgm.2005.12.005, PII S1093326305001737
-
Wang J, Wang W, Kollman PA, Case DA (2006) Automatic atom type and bond type perception in molecular mechanical calculations. J Mol Graph Model 25:247-260 (Pubitemid 44363172)
-
(2006)
Journal of Molecular Graphics and Modelling
, vol.25
, Issue.2
, pp. 247-260
-
-
Wang, J.1
Wang, W.2
Kollman, P.A.3
Case, D.A.4
-
53
-
-
2942532422
-
Development and testing of a general amber force field
-
Wang J, Wolf RM, Caldwell JW, Kollman PA, Case DA (2004) Development and testing of a general amber force field. J Comput Chem 25:1157-1174
-
(2004)
J Comput Chem
, vol.25
, pp. 1157-1174
-
-
Wang, J.1
Wolf, R.M.2
Caldwell, J.W.3
Kollman, P.A.4
Case, D.A.5
-
54
-
-
0242663237
-
A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations
-
Duan Y, Wu C, Chowdhury S, Lee MC, Xiong G, Zhang W, Yang R, Cieplak P, Luo R, Lee T, Caldwell J, Wang J, Kollman PA (2003) A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations. J Comput Chem 24:1999-2012
-
(2003)
J Comput Chem
, vol.24
, pp. 1999-2012
-
-
Duan, Y.1
Wu, C.2
Chowdhury, S.3
Lee, M.C.4
Xiong, G.5
Zhang, W.6
Yang, R.7
Cieplak, P.8
Luo, R.9
Lee, T.10
Caldwell, J.11
Wang, J.12
Kollman, P.A.13
-
55
-
-
65249187243
-
MM-PBSA captures key roles of intercalating water molecules at a protein-protein interface
-
Wong S, Amaro RE, McCammon JA (2009) MM-PBSA captures key roles of intercalating water molecules at a protein-protein interface. J Chem Theor Comput 5:422-429
-
(2009)
J Chem Theor Comput
, vol.5
, pp. 422-429
-
-
Wong, S.1
Amaro, R.E.2
McCammon, J.A.3
-
56
-
-
34247219622
-
Binding of antifusion peptides with HIVgp41 from molecular dynamics simulations: Quantitative correlation with experiment
-
DOI 10.1002/prot.21301
-
Strockbine B, Rizzo RC (2007) Binding of anti-fusion peptides with HIVgp41 from molecular dynamics simulations: quantitative correlation with experiment. Proteins 67:630-642 (Pubitemid 46625579)
-
(2007)
Proteins: Structure, Function and Genetics
, vol.67
, Issue.3
, pp. 630-642
-
-
Strockbine, B.1
Rizzo, R.C.2
-
57
-
-
0000538815
-
Analytical molecular surface calculation
-
Connolly ML (1983) Analytical molecular surface calculation. J Appl Cryst 16:548-558
-
(1983)
J Appl Cryst
, vol.16
, pp. 548-558
-
-
Connolly, M.L.1
-
59
-
-
64049102289
-
Binding of small-molecule ligands to proteins: "what you see" is not always "what you get
-
Mobley DC, Dill KA (2009) Binding of small-molecule ligands to proteins: "what you see" is not always "what you get. Structure 17:489-498
-
(2009)
Structure
, vol.17
, pp. 489-498
-
-
Mobley, D.C.1
Dill, K.A.2
-
60
-
-
0035668653
-
Energetic analysis of binding of progesterone and 5β-androstane-3, 17-dione to anti-progesterone antibody DB3 using molecular dynamics and free energy calculations
-
Perakyla M, Nordman N (2001) Energetic analysis of binding of progesterone and 5β-androstane-3,17-dione to anti progesterone antibody DB3 using molecular dynamics and free energy calculations. Prot Eng 14:753-758 (Pubitemid 34024656)
-
(2001)
Protein Engineering
, vol.14
, Issue.10
, pp. 753-758
-
-
Perakyla, M.1
Nordman, N.2
-
61
-
-
0034521981
-
Calculating structures and free energies of complex molecules: Combining molecular mechanics and continuum models
-
DOI 10.1021/ar000033j
-
Kollman PA, Massova I, Reyes C, Kuhn B, Huo SH, Chong L, Lee M, Lee T, Duan Y, Wang W, Donini O, Cieplak P, Srinivasan J, Case DA, Cheatham TE (2000) Calculating structures and free energies of complex molecules: combining molecular mechanics and continuum models. Accts Chem Res 33:889-897 (Pubitemid 32056774)
-
(2000)
Accounts of Chemical Research
, vol.33
, Issue.12
, pp. 889-897
-
-
Kollman, P.A.1
Massova, I.2
Reyes, C.3
Kuhn, B.4
Huo, S.5
Chong, L.6
Lee, M.7
Lee, T.8
Duan, Y.9
Wang, W.10
Donini, O.11
-
62
-
-
0034811498
-
Use of MM-PBSA in reproducing the binding free energies to HIV-1 RT of TIBO derivatives and predicting the binding mode to HIV-1 RT of efavirenz by docking and MM-PBSA
-
DOI 10.1021/ja003834q
-
Wang J, Morin P, Wang W, Kollman PA (2001) Use of MMPBSA in reproducing the binding free energies to HIV-1 RT of TIBO derivatives and predicting the binding mode to HIV-1 RT of efavirenz by docking and MM-PBSA. J Am Chem Soc 123:5221-5230 (Pubitemid 32910665)
-
(2001)
Journal of the American Chemical Society
, vol.123
, Issue.22
, pp. 5221-5230
-
-
Wang, J.1
Morin, P.2
Wang, W.3
Kollman, P.A.4
-
63
-
-
35348864558
-
Validation of an automated procedure for the prediction of relative free energies of binding on a set of aldose reductase inhibitors
-
DOI 10.1016/j.bmc.2007.08.019, PII S0968089607006931
-
Ferrari AM, Degliesposti G, Sgobba M, Rastelli G (2007) Validation of an automated procedure for the prediction of relative free energies of binding on a set of aldose reductase inhibitors. Bioorg Med Chem 15:7865-7877 (Pubitemid 47575902)
-
(2007)
Bioorganic and Medicinal Chemistry
, vol.15
, Issue.24
, pp. 7865-7877
-
-
Ferrari, A.M.1
Degliesposti, G.2
Sgobba, M.3
Rastelli, G.4
-
64
-
-
0142196094
-
MM-PBSA free energy analysis of endo-1,4-xylanase II (XynII)-substrate complexes: Binding of the reactive sugar in a skew boat and chair conformation
-
Laitinen T, Rouvinen J, Peräkylä M (2003) MM-PBSA free energy analysis of endo-1,4-xylanase II (XynII)-substrate complexes: binding of the reactive sugar in a skew boat and chair conformation. Org Biomol Chem 1:3535-3540
-
(2003)
Org Biomol Chem
, vol.1
, pp. 3535-3540
-
-
Laitinen, T.1
Rouvinen, J.2
Peräkylä, M.3
-
65
-
-
0005318501
-
Effect of SB 203580 on the activity of c-Raf in vitro and in vivo
-
Hall-Jackson CA, Goedert M, Hedge P, Cohen P (1999) Effect of SB 203580 on the activity of c-Raf in vitro and in vivo. Oncogene 18:2047-2054 (Pubitemid 29178573)
-
(1999)
Oncogene
, vol.18
, Issue.12
, pp. 2047-2054
-
-
Hall-Jackson, C.A.1
Goedert, M.2
Hedge, P.3
Cohen, P.4
-
66
-
-
0001158480
-
Structural analysis of a series of antiviral agents complexed with human rhinovirus 14
-
Badger J, Minor I, Kremer MJ, Oliveira MA, Smith TJ, Griffith JP, Guerin DM, Krishnaswamy S, Luo M, Rossmann MG, Mckinlay MA, Diana GD, Dutko FJ, Fancher M, Rueckert RR, Heinz BA (1988) Structural analysis of a series of antiviral agents complexed with human rhinovirus 14. Proc Natl Acad Sci USA 85:3304-3308
-
(1988)
Proc Natl Acad Sci USA
, vol.85
, pp. 3304-3308
-
-
Badger, J.1
Minor, I.2
Kremer, M.J.3
Oliveira, M.A.4
Smith, T.J.5
Griffith, J.P.6
Guerin, D.M.7
Krishnaswamy, S.8
Luo, M.9
Rossmann, M.G.10
McKinlay, M.A.11
Diana, G.D.12
Dutko, F.J.13
Fancher, M.14
Rueckert, R.R.15
Heinz, B.A.16
-
67
-
-
10744233372
-
On the detection of multiple-binding modes of ligands to proteins, from biological, structural, and modeling data
-
DOI 10.1023/A:1025313705564
-
Lewis PJ, Jonge M, Daeyaert F, Koymans L, Vinkers M, Heeres J, Janssen PAJ, Arnold E, Das K, Clark AD, Hughes SH, Boyer PL, de B'thune MP, Pauwels R, Andries K, Kukla M, Ludovici D, Corte BD, Kavash R, Ho C (2003) On the detection of multiplebinding modes of ligands to proteins, from biological, structural, and modeling data. J Comput Aided Mol Des 17:129-134 (Pubitemid 37062776)
-
(2003)
Journal of Computer-Aided Molecular Design
, vol.17
, Issue.2-4
, pp. 129-134
-
-
Lewis, P.J.1
De Jonge, M.2
Daeyaert, F.3
Koymans, L.4
Vinkers, M.5
Heeres, J.6
Janssen, P.A.J.7
Arnold, E.8
Das, K.9
Clark Jr., A.D.10
Hughes, S.H.11
Boyer, P.L.12
De Bethune, M.-P.13
Pauwels, R.14
Andries, K.15
Kukla, M.16
Ludovici, D.17
De Corte, B.18
Kavash, R.19
Ho, C.20
more..
-
68
-
-
3242766018
-
Substituted 3-imidazo[1,2-a]pyridin-3-yl-4-(1,2,3,4-tetrahydro-[1,4] diazepino-[6,7,1-hi]indol-7-yl)pyrrole-2,5-diones as highly selective and potent inhibitors of glycogen synthase kinase-3
-
DOI 10.1021/jm049768a
-
Engler TA, Henry JR, Malhotra S, Cunningham B, Furness K, Brozinick J, Burkholder TP, Clayton J, Diefenbacher C, Hawkins E, Iversen PW, Li Y, Lindstrom TD, Marquart AL, McLean J, Mendel D, Misener E, Briere D, O'Toole JC, Porter WJ, Queener S, Reel JK, Owens RA, Brier RA, Eessalu TA, Wagner JR, Campbell RA, Vaughn RS (2004) Substituted 3- imidazo[1,2-a]pyridin-3-yl- 4-(1,2,3,4- tetrahydro-[1, 4]diazepino- [6,7,1-hi]indol-7-yl)pyrrole-2,5-diones as highly selective and potent inhibitors of glycogen synthase kinase-3. J Med Chem 47:3934-3937 (Pubitemid 38970955)
-
(2004)
Journal of Medicinal Chemistry
, vol.47
, Issue.16
, pp. 3934-3937
-
-
Engler, T.A.1
Henry, J.R.2
Malhotra, S.3
Cunningham, B.4
Furness, K.5
Brozinick, J.6
Burkholder, T.P.7
Clay, M.P.8
Clayton, J.9
Diefenbacher, C.10
Hawkins, E.11
Iversen, P.W.12
Li, Y.13
Lindstrom, T.D.14
Marquart, A.L.15
McLean, J.16
Mendel, D.17
Misener, E.18
Briere, D.19
O'Toole, J.C.20
Porter, W.J.21
Queener, S.22
Reel, J.K.23
Owens, R.A.24
Brier, R.A.25
Eessalu, T.E.26
Wagner, J.R.27
Campbell, R.M.28
Vaughn, R.29
more..
-
69
-
-
34247352907
-
Novel bis(indolyl)maleimide pyridinophanes that are potent, selective inhibitors of glycogen synthase kinase-3
-
DOI 10.1016/j.bmcl.2007.02.059, PII S0960894X07002569
-
Zhang HC, Bonaga LVR, Ye H, Derian CK, Damiano BP, Maryanoff BE (2007) Novel bis(indolyl)maleimide pyridinophanes that are potent, selective inhibitors of glycogen synthase kinase-3. Bioorg Med Chem Letts 17:2863-2868 (Pubitemid 46636245)
-
(2007)
Bioorganic and Medicinal Chemistry Letters
, vol.17
, Issue.10
, pp. 2863-2868
-
-
Zhang, H.-C.1
Bonaga, L.V.R.2
Ye, H.3
Derian, C.K.4
Damiano, B.P.5
Maryanoff, B.E.6
-
70
-
-
0142231577
-
Structural basis for UCN-01 (7-hydroxystaurosporine) specificity and PDK1 (3-phosphoinositide-dependent protein kinase-1) inhibition
-
DOI 10.1042/BJ20031119
-
Komander D, KularGS, Bain J, ElliottM, Alessi DR, van Aalten DMF (2003) Structural basis for UCN-01 (7-hydroxystaurosporine) specificity and PDK1 (3-phosphoinositide-dependent protein kinase-1) inhibition. Biochem J 375:255-262 (Pubitemid 37315433)
-
(2003)
Biochemical Journal
, vol.375
, Issue.2
, pp. 255-262
-
-
Komander, D.1
Kular, G.S.2
Bain, J.3
Elliott, M.4
Alessi, D.R.5
Van Aalten, D.M.F.6
-
71
-
-
0242664588
-
Structural Insights and Biological Effects of Glycogen Synthase Kinase 3-specific Inhibitor AR-A014418
-
DOI 10.1074/jbc.M306268200
-
Bhat R, Xue Y, Berg S, Hellberg S, Ormö M, Nilsson Y, Radesäter AC, Jerning E, Markgren PO, Borgegård T, Nylöf M, Giménez-Cassina A, Hernández F, Díaz-Nido J, Avila J (2003) Structural insights and biological effects of glycogen synthase kinase 3-specific inhibitor AR-A014418. J Biol Chem 278:45937-45945 (Pubitemid 37432740)
-
(2003)
Journal of Biological Chemistry
, vol.278
, Issue.46
, pp. 45937-45945
-
-
Bhat, R.1
Xue, Y.2
Berg, S.3
Hellberg, S.4
Ormo, M.5
Nilsson, Y.6
Radesater, A.-C.7
Jerning, E.8
Markgren, P.-O.9
Borgegard, T.10
Nylof, M.11
Gimenez-Cassina, A.12
Hernandez, F.13
Lucas, J.J.14
Diaz-Nido, J.15
Avila, J.16
-
72
-
-
78650342503
-
Discovery of novel GSK-3β inhibitors with potent in vitro and in vivo activities and excellent brain permeability using combined ligand- and structure-based virtual screening
-
Khanfar MA, Hill RA, AKaddoumi A, El Sayed KA (2010) Discovery of novel GSK-3β inhibitors with potent in vitro and in vivo activities and excellent brain permeability using combined ligand- and structure-based virtual screening. J Med Chem 53:8534-8545
-
(2010)
J Med Chem
, vol.53
, pp. 8534-8545
-
-
Khanfar, M.A.1
Hill, R.A.2
Akaddoumi, A.3
El Sayed, K.A.4
-
73
-
-
79651469242
-
Structural features underlying selective inhibition of GSK3β by Dibromocantharelline: Implications for rational drug design
-
doi:10.1111/ j.1747-0285.2010.01069.x
-
Zhang N, Zhong R, Yan H, Jiang YC (2010) Structural features underlying selective inhibition of GSK3β by Dibromocantharelline: implications for rational drug design. Biol Drug Design. doi:10.1111/ j.1747-0285.2010.01069.x
-
(2010)
Biol Drug Design.
-
-
Zhang, N.1
Zhong, R.2
Yan, H.3
Jiang, Y.C.4
-
74
-
-
77953181546
-
In silico based ligand design and docking studies of GSK-3ß inhibitors
-
Babu PA, Chitti S, Rajesh B, Prasanth VV, RadhaKishen JV, Vali RK (2010) In silico based ligand design and docking studies of GSK-3ß inhibitors. Chem Bioinf J 10:1-12
-
(2010)
Chem Bioinf J
, vol.10
, pp. 1-12
-
-
Babu, P.A.1
Chitti, S.2
Rajesh, B.3
Prasanth, V.V.4
Radhakishen, J.V.5
Vali, R.K.6
|