-
1
-
-
15044340366
-
Both RNase E and RNase III control the stability of sodB mRNA upon translational inhibition by the small regulatory RNA RyhB
-
doi: 10.1093/nar/gki313
-
Afonyushkin, T., Večerek, B., Moll, I., Bläsi, U., and Kaberdin, V.R. 2005. Both RNase E and RNase III control the stability of sodB mRNA upon translational inhibition by the small regulatory RNA RyhB. Nucleic Acids Res. 33: 1678-1689. doi: 10.1093/nar/gki313.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 1678-1689
-
-
Afonyushkin, T.1
Večerek, B.2
Moll, I.3
Bläsi, U.4
Kaberdin, V.R.5
-
2
-
-
0032716841
-
Growth phase-dependent variation in protein composition of the Escherichia coli nucleoid
-
Ali Azam, T., Iwata, A., Nishimura, A., Ueda, S., and Ishihama, A. 1999. Growth phase-dependent variation in protein composition of the Escherichia coli nucleoid. J. Bacteriol. 181: 6361-6370.
-
(1999)
J. Bacteriol
, vol.181
, pp. 6361-6370
-
-
Ali Azam, T.1
Iwata, A.2
Nishimura, A.3
Ueda, S.4
Ishihama, A.5
-
3
-
-
33745951483
-
Characterization of the functional domains of Escherichia coli RNase II
-
Amblar, M., Barbas, A., Fialho, A.M., and Arraiano, C.M. 2006. Characterization of the functional domains of Escherichia coli RNase II. J. Mol. Biol. 360: 921-933.
-
(2006)
J. Mol. Biol
, vol.360
, pp. 921-933
-
-
Amblar, M.1
Barbas, A.2
Fialho, A.M.3
Arraiano, C.M.4
-
4
-
-
33847247982
-
The role of the S1 domain in exoribonucleolytic activity: Substrate specificity and multimerization
-
Amblar, M., Barbas, A., Gomez-Puertas, P., and Arraiano, C.M. 2007. The role of the S1 domain in exoribonucleolytic activity: Substrate specificity and multimerization. RNA 13: 317-327.
-
(2007)
RNA
, vol.13
, pp. 317-327
-
-
Amblar, M.1
Barbas, A.2
Gomez-Puertas, P.3
Arraiano, C.M.4
-
5
-
-
33644841796
-
RNase R affects gene expression in stationary phase: Regulation of ompA
-
Andrade, J.M., Cairrão, F., and Arraiano, C.M. 2006. RNase R affects gene expression in stationary phase: Regulation of ompA. Mol. Microbiol. 60: 219-228.
-
(2006)
Mol. Microbiol
, vol.60
, pp. 219-228
-
-
Andrade, J.M.1
Cairrão, F.2
Arraiano, C.M.3
-
6
-
-
0024095739
-
Stabilisation of discrete mRNA breakdown products in ams pnp rnb multiple mutants of Escherichia coli K-12
-
Arraiano, C.M., Yancey, S.D., and Kushner, S.R. 1988. Stabilisation of discrete mRNA breakdown products in ams pnp rnb multiple mutants of Escherichia coli K-12. J. Bacteriol. 170: 4625-4633.
-
(1988)
J. Bacteriol
, vol.170
, pp. 4625-4633
-
-
Arraiano, C.M.1
Yancey, S.D.2
Kushner, S.R.3
-
7
-
-
33947377937
-
Role of mRNA stability in growth phase regulation of gene expression in the group A Streptococcus
-
Barnett, T.C., Bugrysheva, J.V., and Scott, J.R. 2007. Role of mRNA stability in growth phase regulation of gene expression in the group A Streptococcus. J. Bacteriol. 189: 1866-1873.
-
(2007)
J. Bacteriol
, vol.189
, pp. 1866-1873
-
-
Barnett, T.C.1
Bugrysheva, J.V.2
Scott, J.R.3
-
8
-
-
34447542213
-
A small RNA downregulates LamB maltoporin in Salmonella
-
Bossi, L. and Figueroa-Bossi, N. 2007. A small RNA downregulates LamB maltoporin in Salmonella. Mol. Microbiol. 65: 799-810.
-
(2007)
Mol. Microbiol
, vol.65
, pp. 799-810
-
-
Bossi, L.1
Figueroa-Bossi, N.2
-
9
-
-
0344394977
-
Cold shock induction of RNase R and its role in the maturation of the quality control mediator SsrA/tmRNA
-
Cairrão, F., Cruz, A., Hiroyuki, M., and Arraiano, C.M. 2003. Cold shock induction of RNase R and its role in the maturation of the quality control mediator SsrA/tmRNA. Mol. Microbiol. 50: 1349-1360.
-
(2003)
Mol. Microbiol
, vol.50
, pp. 1349-1360
-
-
Cairrão, F.1
Cruz, A.2
Hiroyuki, M.3
Arraiano, C.M.4
-
10
-
-
0036549769
-
The Escherichia coli RNA degradosome: Structure, function, and relationship in other ribonucleolytic multienzyme complexes
-
Carpousis, A.J. 2002. The Escherichia coli RNA degradosome: Structure, function, and relationship in other ribonucleolytic multienzyme complexes. Biochem. Soc. Trans. 30: 150-155.
-
(2002)
Biochem. Soc. Trans
, vol.30
, pp. 150-155
-
-
Carpousis, A.J.1
-
11
-
-
0034612342
-
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
-
Datsenko, K.A. and Wanner, B.L. 2000. One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc. Natl. Acad. Sci. 97: 6640-6645.
-
(2000)
Proc. Natl. Acad. Sci
, vol.97
, pp. 6640-6645
-
-
Datsenko, K.A.1
Wanner, B.L.2
-
12
-
-
0003395950
-
Polynucleotide phosphorylase and ribonuclease II are required for cell viability and mRNA turnover in Escherichia coli K-12
-
Donovan, W.P. and Kushner, S.R. 1986. Polynucleotide phosphorylase and ribonuclease II are required for cell viability and mRNA turnover in Escherichia coli K-12. Proc. Natl. Acad. Sci. 83: 120-124.
-
(1986)
Proc. Natl. Acad. Sci
, vol.83
, pp. 120-124
-
-
Donovan, W.P.1
Kushner, S.R.2
-
13
-
-
33744950278
-
Down-regulation of porins by a small RNA bypasses the essentiality of the regulated intramembrane proteolysis protease RseP in Escherichia coli
-
Douchin, V., Bohn, C., and Bouloc, P. 2006. Down-regulation of porins by a small RNA bypasses the essentiality of the regulated intramembrane proteolysis protease RseP in Escherichia coli. J. Biol. Chem. 281: 12253-12259.
-
(2006)
J. Biol. Chem
, vol.281
, pp. 12253-12259
-
-
Douchin, V.1
Bohn, C.2
Bouloc, P.3
-
14
-
-
0037184518
-
The poly(A) tail of mRNAs: Bodyguard in eukaryotes, scavenger in bacteria
-
Dreyfus, M. and Régnier, P. 2002. The poly(A) tail of mRNAs: Bodyguard in eukaryotes, scavenger in bacteria. Cell 111: 611-613.
-
(2002)
Cell
, vol.111
, pp. 611-613
-
-
Dreyfus, M.1
Régnier, P.2
-
16
-
-
33748414894
-
Unraveling the dynamics of RNA degradation by ribonuclease II and its RNA-bound complex
-
Frazão, C., McVey, C.E., Amblar, M., Barbas, A., Vonrhein, C., Arraiano, C.M., and Carrondo, M.A. 2006. Unraveling the dynamics of RNA degradation by ribonuclease II and its RNA-bound complex. Nature 443: 110-114.
-
(2006)
Nature
, vol.443
, pp. 110-114
-
-
Frazão, C.1
McVey, C.E.2
Amblar, M.3
Barbas, A.4
Vonrhein, C.5
Arraiano, C.M.6
Carrondo, M.A.7
-
17
-
-
33748257975
-
Modulating the outer membrane with small RNAs
-
Guillier, M., Gottesman, S., and Storz, G. 2006. Modulating the outer membrane with small RNAs. Genes & Dev. 20: 2338-2348.
-
(2006)
Genes & Dev
, vol.20
, pp. 2338-2348
-
-
Guillier, M.1
Gottesman, S.2
Storz, G.3
-
18
-
-
33745869788
-
RNA-quality control by the exosome
-
Houseley, J., LaCava, J., and Tollervey, D. 2006. RNA-quality control by the exosome. Nat. Rev. Mol. Cell Biol. 7: 529-539.
-
(2006)
Nat. Rev. Mol. Cell Biol
, vol.7
, pp. 529-539
-
-
Houseley, J.1
LaCava, J.2
Tollervey, D.3
-
20
-
-
0032539857
-
3′ exoribonucleolytic trimming is a common feature of the maturation of small, stable RNAs in Escherichia coli
-
Li, Z., Pandit, S., and Deutscher, M.P. 1998. 3′ exoribonucleolytic trimming is a common feature of the maturation of small, stable RNAs in Escherichia coli. Proc. Natl. Acad. Sci. 95: 2856-2861.
-
(1998)
Proc. Natl. Acad. Sci
, vol.95
, pp. 2856-2861
-
-
Li, Z.1
Pandit, S.2
Deutscher, M.P.3
-
21
-
-
0036500552
-
RNA quality control: Degradation of defective transfer RNA
-
Li, Z., Reimers, S., Pandit, S., and Deutscher, M.P. 2002. RNA quality control: Degradation of defective transfer RNA. EMBO J. 2: 1132-1138.
-
(2002)
EMBO J
, vol.2
, pp. 1132-1138
-
-
Li, Z.1
Reimers, S.2
Pandit, S.3
Deutscher, M.P.4
-
22
-
-
0033560992
-
Preferential degradation of polyadenylated and polyuridinylated RNAs by the bacterial exoribonuclease polynucleotide phosphorylase
-
Lisitsky, I. and Schuster, G. 1999. Preferential degradation of polyadenylated and polyuridinylated RNAs by the bacterial exoribonuclease polynucleotide phosphorylase. Eur. J. Biochem. 261: 468-474.
-
(1999)
Eur. J. Biochem
, vol.261
, pp. 468-474
-
-
Lisitsky, I.1
Schuster, G.2
-
23
-
-
0141860088
-
Coupled degradation of a small regulatory RNA and its mRNA targets in Escherichia coli
-
Massé, E., Escorcia, F.E., and Gottesman, S. 2003. Coupled degradation of a small regulatory RNA and its mRNA targets in Escherichia coli. Genes & Dev. 17: 2374-2383.
-
(2003)
Genes & Dev
, vol.17
, pp. 2374-2383
-
-
Massé, E.1
Escorcia, F.E.2
Gottesman, S.3
-
24
-
-
34249101864
-
5′-to-3′ exoribonuclease activity in bacteria: Role of RNase J1 in rRNA maturation and 5′ stability of mRNA
-
Mathy, N., Benard, L., Pellegrini, O., Daou, R., Wen, T., and Condon, C. 2007. 5′-to-3′ exoribonuclease activity in bacteria: Role of RNase J1 in rRNA maturation and 5′ stability of mRNA. Cell 129: 681-692.
-
(2007)
Cell
, vol.129
, pp. 681-692
-
-
Mathy, N.1
Benard, L.2
Pellegrini, O.3
Daou, R.4
Wen, T.5
Condon, C.6
-
25
-
-
0021141562
-
Promoter exchange between ompF and ompC, genes for osmoregulated major outer membrane proteins of Escherichia coli K-12
-
Matsuyama, S., Inokuchi, K., and Mizushima, S. 1984. Promoter exchange between ompF and ompC, genes for osmoregulated major outer membrane proteins of Escherichia coli K-12. J. Bacteriol. 158: 1041-1047.
-
(1984)
J. Bacteriol
, vol.158
, pp. 1041-1047
-
-
Matsuyama, S.1
Inokuchi, K.2
Mizushima, S.3
-
26
-
-
0023099212
-
Tn5 insertion in the polynucleotide phosphorylase (pnp) gene in Escherichia coli increases susceptibility to antibiotics
-
McMurry, L.M. and Levy, S.B. 1987. Tn5 insertion in the polynucleotide phosphorylase (pnp) gene in Escherichia coli increases susceptibility to antibiotics. J. Bacteriol. 169: 1321-1324.
-
(1987)
J. Bacteriol
, vol.169
, pp. 1321-1324
-
-
McMurry, L.M.1
Levy, S.B.2
-
27
-
-
0142240435
-
Coincident Hfq binding and RNase E cleavage sites on mRNA and small regulatory RNAs
-
Moll, I., Afonyushkin, T., Vytvytska, O., Kaberdin, V.R., and Blasi, U. 2003. Coincident Hfq binding and RNase E cleavage sites on mRNA and small regulatory RNAs. RNA 9: 1308-1314.
-
(2003)
RNA
, vol.9
, pp. 1308-1314
-
-
Moll, I.1
Afonyushkin, T.2
Vytvytska, O.3
Kaberdin, V.R.4
Blasi, U.5
-
28
-
-
0034710943
-
Polynucleotide phosphorylase functions both as a 3′-5′ exonuclease and a poly(A) polymerase in Escherichia coli
-
Mohanty, B.K. and Kushner, S.R. 2000. Polynucleotide phosphorylase functions both as a 3′-5′ exonuclease and a poly(A) polymerase in Escherichia coli. Proc. Natl. Acad. Sci. 97: 11966-11971.
-
(2000)
Proc. Natl. Acad. Sci
, vol.97
, pp. 11966-11971
-
-
Mohanty, B.K.1
Kushner, S.R.2
-
29
-
-
24944507588
-
RNase E-based ribonucleoprotein complexes: Mechanical basis of mRNA destabilization mediated by bacterial noncoding RNAs
-
Morita, T., Maki, K., and Aiba, H. 2005. RNase E-based ribonucleoprotein complexes: Mechanical basis of mRNA destabilization mediated by bacterial noncoding RNAs. Genes & Dev. 19: 2176-2186.
-
(2005)
Genes & Dev
, vol.19
, pp. 2176-2186
-
-
Morita, T.1
Maki, K.2
Aiba, H.3
-
30
-
-
0032932638
-
Function, mechanism, and regulation of bacterial ribonucleases
-
Nicholson, A.W. 1999. Function, mechanism, and regulation of bacterial ribonucleases. FEMS Microbiol. Rev. 23: 371-390.
-
(1999)
FEMS Microbiol. Rev
, vol.23
, pp. 371-390
-
-
Nicholson, A.W.1
-
31
-
-
0028986829
-
Polyadenylylation helps regulate mRNA decay in Escherichia coli
-
O'Hara, E.B., Chekanova, J.A., Ingle, C.A., Kushner, Z.R., Peters, E., and Kushner, S.R. 1995. Polyadenylylation helps regulate mRNA decay in Escherichia coli. Proc. Natl. Acad. Sci. 92: 1807-1811.
-
(1995)
Proc. Natl. Acad. Sci
, vol.92
, pp. 1807-1811
-
-
O'Hara, E.B.1
Chekanova, J.A.2
Ingle, C.A.3
Kushner, Z.R.4
Peters, E.5
Kushner, S.R.6
-
33
-
-
22144485555
-
Doughnuts dealing with RNA
-
Pruijn, G.J. 2005. Doughnuts dealing with RNA. Nat. Struct. Mol. Biol. 12: 562-564.
-
(2005)
Nat. Struct. Mol. Biol
, vol.12
, pp. 562-564
-
-
Pruijn, G.J.1
-
34
-
-
28244471582
-
Regulation of ompA mRNA stability: The role of a small regulatory RNA in growth phase-dependent control
-
Rasmussen, A.A., Eriksen, M., Gilany, K., Udesen, C., Franch, T., Petersen, C., and Valetin-Hansen, P. 2005. Regulation of ompA mRNA stability: The role of a small regulatory RNA in growth phase-dependent control. Mol. Microbiol. 58: 1421-1429.
-
(2005)
Mol. Microbiol
, vol.58
, pp. 1421-1429
-
-
Rasmussen, A.A.1
Eriksen, M.2
Gilany, K.3
Udesen, C.4
Franch, T.5
Petersen, C.6
Valetin-Hansen, P.7
-
35
-
-
0242400018
-
Degradation of mRNA in bacteria: Emergence of ubiquitous features
-
Régnier, P. and Arraiano, C.M. 2000. Degradation of mRNA in bacteria: Emergence of ubiquitous features. Bioessays 22: 235-244.
-
(2000)
Bioessays
, vol.22
, pp. 235-244
-
-
Régnier, P.1
Arraiano, C.M.2
-
36
-
-
20644449571
-
An abundance of RNA regulators
-
Storz, G., Altuvia, S., and Wassarman, K.M. 2005. An abundance of RNA regulators. Annu. Rev. Biochem. 74: 199-217.
-
(2005)
Annu. Rev. Biochem
, vol.74
, pp. 199-217
-
-
Storz, G.1
Altuvia, S.2
Wassarman, K.M.3
-
37
-
-
33748705968
-
Identification of a novel regulatory protein (CsrD) that targets the global regulatory RNAs CsrB and CsrC for degradation by RNase E
-
Suzuki, K., Babitzke, P., Kushner, S.R., and Romeo, T. 2006. Identification of a novel regulatory protein (CsrD) that targets the global regulatory RNAs CsrB and CsrC for degradation by RNase E. Genes & Dev. 20: 2605-2617.
-
(2006)
Genes & Dev
, vol.20
, pp. 2605-2617
-
-
Suzuki, K.1
Babitzke, P.2
Kushner, S.R.3
Romeo, T.4
-
38
-
-
34047094398
-
Sigma E controls biogenesis of the antisense RNA MicA
-
doi: 10.1093/nar/gkl1154
-
Udekwu, K.I. and Wagner, E.G. 2007. Sigma E controls biogenesis of the antisense RNA MicA. Nucleic Acids Res. 35: 1279-1288. doi: 10.1093/nar/gkl1154.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 1279-1288
-
-
Udekwu, K.I.1
Wagner, E.G.2
-
39
-
-
25844458478
-
Hfq-dependent regulation ofOmpAsynthesis is mediated by an antisense RNA
-
Udekwu, K.I., Darfeuille, F., Vogel, J., Reimegard, J., Holmqvist, E., and Wagner, E.G. 2005. Hfq-dependent regulation ofOmpAsynthesis is mediated by an antisense RNA. Genes & Dev. 19: 2355-2366.
-
(2005)
Genes & Dev
, vol.19
, pp. 2355-2366
-
-
Udekwu, K.I.1
Darfeuille, F.2
Vogel, J.3
Reimegard, J.4
Holmqvist, E.5
Wagner, E.G.6
-
40
-
-
1642565815
-
The bacterial Sm-like protein Hfq: A key player in RNA transactions
-
Valentin-Hansen, P., Eriksen, M., and Udesen, C. 2004. The bacterial Sm-like protein Hfq: A key player in RNA transactions. Mol. Microbiol. 51: 1525-1533.
-
(2004)
Mol. Microbiol
, vol.51
, pp. 1525-1533
-
-
Valentin-Hansen, P.1
Eriksen, M.2
Udesen, C.3
-
41
-
-
24144440749
-
Effect of the increased stability of the penicillin amidase mRNA on the protein expression levels
-
Viegas, S.C., Schmidt, D., Kasche, V., Arraiano, C.M., and Ignatova, Z. 2005. Effect of the increased stability of the penicillin amidase mRNA on the protein expression levels. FEBS Lett. 579: 5069-5073.
-
(2005)
FEBS Lett
, vol.579
, pp. 5069-5073
-
-
Viegas, S.C.1
Schmidt, D.2
Kasche, V.3
Arraiano, C.M.4
Ignatova, Z.5
-
42
-
-
0033012192
-
Small RNAs in Escherichia coli
-
Wassarman, K.M., Zhang, A., and Storz, G. 1999. Small RNAs in Escherichia coli. Trends Microbiol. 7: 37-45.
-
(1999)
Trends Microbiol
, vol.7
, pp. 37-45
-
-
Wassarman, K.M.1
Zhang, A.2
Storz, G.3
-
43
-
-
0028945837
-
RNA degradation in Escherichia coli regulated by 3′ adenylation and 5′ phosphorylation
-
Xu, F. and Cohen, S.N. 1995. RNA degradation in Escherichia coli regulated by 3′ adenylation and 5′ phosphorylation. Nature 374: 180-183.
-
(1995)
Nature
, vol.374
, pp. 180-183
-
-
Xu, F.1
Cohen, S.N.2
-
44
-
-
33749072017
-
Structural basis for processivity and single-strand specificity of RNase II
-
Zuo, Y., Vincent, H.A., Zhang, J., Wang, Y., Deutscher, M.P., and Malhotra, A. 2006. Structural basis for processivity and single-strand specificity of RNase II. Mol. Cell 24: 149-156.
-
(2006)
Mol. Cell
, vol.24
, pp. 149-156
-
-
Zuo, Y.1
Vincent, H.A.2
Zhang, J.3
Wang, Y.4
Deutscher, M.P.5
Malhotra, A.6
|