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Volumn 14, Issue 3, 2008, Pages 543-551

PNPase is a key player in the regulation of small RNAs that control the expression of outer membrane proteins

Author keywords

MicA RNA; ompA; PNPase; RybB RNA; Small RNA

Indexed keywords

MESSENGER RNA; MICA RNA; OUTER MEMBRANE PROTEIN A; POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE; RIBONUCLEASE E; RNA; RYBB RNA; UNCLASSIFIED DRUG; BACTERIAL RNA; COMPLEMENTARY RNA; DNA GLYCOSYLASE MUTY; DNA GLYCOSYLTRANSFERASE; ESCHERICHIA COLI PROTEIN; OMPA PROTEIN, E COLI; OUTER MEMBRANE PROTEIN; PRIMER DNA; UNTRANSLATED RNA;

EID: 40449098228     PISSN: 13558382     EISSN: 14699001     Source Type: Journal    
DOI: 10.1261/rna.683308     Document Type: Article
Times cited : (72)

References (44)
  • 1
    • 15044340366 scopus 로고    scopus 로고
    • Both RNase E and RNase III control the stability of sodB mRNA upon translational inhibition by the small regulatory RNA RyhB
    • doi: 10.1093/nar/gki313
    • Afonyushkin, T., Večerek, B., Moll, I., Bläsi, U., and Kaberdin, V.R. 2005. Both RNase E and RNase III control the stability of sodB mRNA upon translational inhibition by the small regulatory RNA RyhB. Nucleic Acids Res. 33: 1678-1689. doi: 10.1093/nar/gki313.
    • (2005) Nucleic Acids Res , vol.33 , pp. 1678-1689
    • Afonyushkin, T.1    Večerek, B.2    Moll, I.3    Bläsi, U.4    Kaberdin, V.R.5
  • 2
    • 0032716841 scopus 로고    scopus 로고
    • Growth phase-dependent variation in protein composition of the Escherichia coli nucleoid
    • Ali Azam, T., Iwata, A., Nishimura, A., Ueda, S., and Ishihama, A. 1999. Growth phase-dependent variation in protein composition of the Escherichia coli nucleoid. J. Bacteriol. 181: 6361-6370.
    • (1999) J. Bacteriol , vol.181 , pp. 6361-6370
    • Ali Azam, T.1    Iwata, A.2    Nishimura, A.3    Ueda, S.4    Ishihama, A.5
  • 3
    • 33745951483 scopus 로고    scopus 로고
    • Characterization of the functional domains of Escherichia coli RNase II
    • Amblar, M., Barbas, A., Fialho, A.M., and Arraiano, C.M. 2006. Characterization of the functional domains of Escherichia coli RNase II. J. Mol. Biol. 360: 921-933.
    • (2006) J. Mol. Biol , vol.360 , pp. 921-933
    • Amblar, M.1    Barbas, A.2    Fialho, A.M.3    Arraiano, C.M.4
  • 4
    • 33847247982 scopus 로고    scopus 로고
    • The role of the S1 domain in exoribonucleolytic activity: Substrate specificity and multimerization
    • Amblar, M., Barbas, A., Gomez-Puertas, P., and Arraiano, C.M. 2007. The role of the S1 domain in exoribonucleolytic activity: Substrate specificity and multimerization. RNA 13: 317-327.
    • (2007) RNA , vol.13 , pp. 317-327
    • Amblar, M.1    Barbas, A.2    Gomez-Puertas, P.3    Arraiano, C.M.4
  • 5
    • 33644841796 scopus 로고    scopus 로고
    • RNase R affects gene expression in stationary phase: Regulation of ompA
    • Andrade, J.M., Cairrão, F., and Arraiano, C.M. 2006. RNase R affects gene expression in stationary phase: Regulation of ompA. Mol. Microbiol. 60: 219-228.
    • (2006) Mol. Microbiol , vol.60 , pp. 219-228
    • Andrade, J.M.1    Cairrão, F.2    Arraiano, C.M.3
  • 6
    • 0024095739 scopus 로고
    • Stabilisation of discrete mRNA breakdown products in ams pnp rnb multiple mutants of Escherichia coli K-12
    • Arraiano, C.M., Yancey, S.D., and Kushner, S.R. 1988. Stabilisation of discrete mRNA breakdown products in ams pnp rnb multiple mutants of Escherichia coli K-12. J. Bacteriol. 170: 4625-4633.
    • (1988) J. Bacteriol , vol.170 , pp. 4625-4633
    • Arraiano, C.M.1    Yancey, S.D.2    Kushner, S.R.3
  • 7
    • 33947377937 scopus 로고    scopus 로고
    • Role of mRNA stability in growth phase regulation of gene expression in the group A Streptococcus
    • Barnett, T.C., Bugrysheva, J.V., and Scott, J.R. 2007. Role of mRNA stability in growth phase regulation of gene expression in the group A Streptococcus. J. Bacteriol. 189: 1866-1873.
    • (2007) J. Bacteriol , vol.189 , pp. 1866-1873
    • Barnett, T.C.1    Bugrysheva, J.V.2    Scott, J.R.3
  • 8
    • 34447542213 scopus 로고    scopus 로고
    • A small RNA downregulates LamB maltoporin in Salmonella
    • Bossi, L. and Figueroa-Bossi, N. 2007. A small RNA downregulates LamB maltoporin in Salmonella. Mol. Microbiol. 65: 799-810.
    • (2007) Mol. Microbiol , vol.65 , pp. 799-810
    • Bossi, L.1    Figueroa-Bossi, N.2
  • 9
    • 0344394977 scopus 로고    scopus 로고
    • Cold shock induction of RNase R and its role in the maturation of the quality control mediator SsrA/tmRNA
    • Cairrão, F., Cruz, A., Hiroyuki, M., and Arraiano, C.M. 2003. Cold shock induction of RNase R and its role in the maturation of the quality control mediator SsrA/tmRNA. Mol. Microbiol. 50: 1349-1360.
    • (2003) Mol. Microbiol , vol.50 , pp. 1349-1360
    • Cairrão, F.1    Cruz, A.2    Hiroyuki, M.3    Arraiano, C.M.4
  • 10
    • 0036549769 scopus 로고    scopus 로고
    • The Escherichia coli RNA degradosome: Structure, function, and relationship in other ribonucleolytic multienzyme complexes
    • Carpousis, A.J. 2002. The Escherichia coli RNA degradosome: Structure, function, and relationship in other ribonucleolytic multienzyme complexes. Biochem. Soc. Trans. 30: 150-155.
    • (2002) Biochem. Soc. Trans , vol.30 , pp. 150-155
    • Carpousis, A.J.1
  • 11
    • 0034612342 scopus 로고    scopus 로고
    • One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
    • Datsenko, K.A. and Wanner, B.L. 2000. One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc. Natl. Acad. Sci. 97: 6640-6645.
    • (2000) Proc. Natl. Acad. Sci , vol.97 , pp. 6640-6645
    • Datsenko, K.A.1    Wanner, B.L.2
  • 12
    • 0003395950 scopus 로고
    • Polynucleotide phosphorylase and ribonuclease II are required for cell viability and mRNA turnover in Escherichia coli K-12
    • Donovan, W.P. and Kushner, S.R. 1986. Polynucleotide phosphorylase and ribonuclease II are required for cell viability and mRNA turnover in Escherichia coli K-12. Proc. Natl. Acad. Sci. 83: 120-124.
    • (1986) Proc. Natl. Acad. Sci , vol.83 , pp. 120-124
    • Donovan, W.P.1    Kushner, S.R.2
  • 13
    • 33744950278 scopus 로고    scopus 로고
    • Down-regulation of porins by a small RNA bypasses the essentiality of the regulated intramembrane proteolysis protease RseP in Escherichia coli
    • Douchin, V., Bohn, C., and Bouloc, P. 2006. Down-regulation of porins by a small RNA bypasses the essentiality of the regulated intramembrane proteolysis protease RseP in Escherichia coli. J. Biol. Chem. 281: 12253-12259.
    • (2006) J. Biol. Chem , vol.281 , pp. 12253-12259
    • Douchin, V.1    Bohn, C.2    Bouloc, P.3
  • 14
    • 0037184518 scopus 로고    scopus 로고
    • The poly(A) tail of mRNAs: Bodyguard in eukaryotes, scavenger in bacteria
    • Dreyfus, M. and Régnier, P. 2002. The poly(A) tail of mRNAs: Bodyguard in eukaryotes, scavenger in bacteria. Cell 111: 611-613.
    • (2002) Cell , vol.111 , pp. 611-613
    • Dreyfus, M.1    Régnier, P.2
  • 16
    • 33748414894 scopus 로고    scopus 로고
    • Unraveling the dynamics of RNA degradation by ribonuclease II and its RNA-bound complex
    • Frazão, C., McVey, C.E., Amblar, M., Barbas, A., Vonrhein, C., Arraiano, C.M., and Carrondo, M.A. 2006. Unraveling the dynamics of RNA degradation by ribonuclease II and its RNA-bound complex. Nature 443: 110-114.
    • (2006) Nature , vol.443 , pp. 110-114
    • Frazão, C.1    McVey, C.E.2    Amblar, M.3    Barbas, A.4    Vonrhein, C.5    Arraiano, C.M.6    Carrondo, M.A.7
  • 17
    • 33748257975 scopus 로고    scopus 로고
    • Modulating the outer membrane with small RNAs
    • Guillier, M., Gottesman, S., and Storz, G. 2006. Modulating the outer membrane with small RNAs. Genes & Dev. 20: 2338-2348.
    • (2006) Genes & Dev , vol.20 , pp. 2338-2348
    • Guillier, M.1    Gottesman, S.2    Storz, G.3
  • 20
    • 0032539857 scopus 로고    scopus 로고
    • 3′ exoribonucleolytic trimming is a common feature of the maturation of small, stable RNAs in Escherichia coli
    • Li, Z., Pandit, S., and Deutscher, M.P. 1998. 3′ exoribonucleolytic trimming is a common feature of the maturation of small, stable RNAs in Escherichia coli. Proc. Natl. Acad. Sci. 95: 2856-2861.
    • (1998) Proc. Natl. Acad. Sci , vol.95 , pp. 2856-2861
    • Li, Z.1    Pandit, S.2    Deutscher, M.P.3
  • 21
    • 0036500552 scopus 로고    scopus 로고
    • RNA quality control: Degradation of defective transfer RNA
    • Li, Z., Reimers, S., Pandit, S., and Deutscher, M.P. 2002. RNA quality control: Degradation of defective transfer RNA. EMBO J. 2: 1132-1138.
    • (2002) EMBO J , vol.2 , pp. 1132-1138
    • Li, Z.1    Reimers, S.2    Pandit, S.3    Deutscher, M.P.4
  • 22
    • 0033560992 scopus 로고    scopus 로고
    • Preferential degradation of polyadenylated and polyuridinylated RNAs by the bacterial exoribonuclease polynucleotide phosphorylase
    • Lisitsky, I. and Schuster, G. 1999. Preferential degradation of polyadenylated and polyuridinylated RNAs by the bacterial exoribonuclease polynucleotide phosphorylase. Eur. J. Biochem. 261: 468-474.
    • (1999) Eur. J. Biochem , vol.261 , pp. 468-474
    • Lisitsky, I.1    Schuster, G.2
  • 23
    • 0141860088 scopus 로고    scopus 로고
    • Coupled degradation of a small regulatory RNA and its mRNA targets in Escherichia coli
    • Massé, E., Escorcia, F.E., and Gottesman, S. 2003. Coupled degradation of a small regulatory RNA and its mRNA targets in Escherichia coli. Genes & Dev. 17: 2374-2383.
    • (2003) Genes & Dev , vol.17 , pp. 2374-2383
    • Massé, E.1    Escorcia, F.E.2    Gottesman, S.3
  • 24
    • 34249101864 scopus 로고    scopus 로고
    • 5′-to-3′ exoribonuclease activity in bacteria: Role of RNase J1 in rRNA maturation and 5′ stability of mRNA
    • Mathy, N., Benard, L., Pellegrini, O., Daou, R., Wen, T., and Condon, C. 2007. 5′-to-3′ exoribonuclease activity in bacteria: Role of RNase J1 in rRNA maturation and 5′ stability of mRNA. Cell 129: 681-692.
    • (2007) Cell , vol.129 , pp. 681-692
    • Mathy, N.1    Benard, L.2    Pellegrini, O.3    Daou, R.4    Wen, T.5    Condon, C.6
  • 25
    • 0021141562 scopus 로고
    • Promoter exchange between ompF and ompC, genes for osmoregulated major outer membrane proteins of Escherichia coli K-12
    • Matsuyama, S., Inokuchi, K., and Mizushima, S. 1984. Promoter exchange between ompF and ompC, genes for osmoregulated major outer membrane proteins of Escherichia coli K-12. J. Bacteriol. 158: 1041-1047.
    • (1984) J. Bacteriol , vol.158 , pp. 1041-1047
    • Matsuyama, S.1    Inokuchi, K.2    Mizushima, S.3
  • 26
    • 0023099212 scopus 로고
    • Tn5 insertion in the polynucleotide phosphorylase (pnp) gene in Escherichia coli increases susceptibility to antibiotics
    • McMurry, L.M. and Levy, S.B. 1987. Tn5 insertion in the polynucleotide phosphorylase (pnp) gene in Escherichia coli increases susceptibility to antibiotics. J. Bacteriol. 169: 1321-1324.
    • (1987) J. Bacteriol , vol.169 , pp. 1321-1324
    • McMurry, L.M.1    Levy, S.B.2
  • 27
    • 0142240435 scopus 로고    scopus 로고
    • Coincident Hfq binding and RNase E cleavage sites on mRNA and small regulatory RNAs
    • Moll, I., Afonyushkin, T., Vytvytska, O., Kaberdin, V.R., and Blasi, U. 2003. Coincident Hfq binding and RNase E cleavage sites on mRNA and small regulatory RNAs. RNA 9: 1308-1314.
    • (2003) RNA , vol.9 , pp. 1308-1314
    • Moll, I.1    Afonyushkin, T.2    Vytvytska, O.3    Kaberdin, V.R.4    Blasi, U.5
  • 28
    • 0034710943 scopus 로고    scopus 로고
    • Polynucleotide phosphorylase functions both as a 3′-5′ exonuclease and a poly(A) polymerase in Escherichia coli
    • Mohanty, B.K. and Kushner, S.R. 2000. Polynucleotide phosphorylase functions both as a 3′-5′ exonuclease and a poly(A) polymerase in Escherichia coli. Proc. Natl. Acad. Sci. 97: 11966-11971.
    • (2000) Proc. Natl. Acad. Sci , vol.97 , pp. 11966-11971
    • Mohanty, B.K.1    Kushner, S.R.2
  • 29
    • 24944507588 scopus 로고    scopus 로고
    • RNase E-based ribonucleoprotein complexes: Mechanical basis of mRNA destabilization mediated by bacterial noncoding RNAs
    • Morita, T., Maki, K., and Aiba, H. 2005. RNase E-based ribonucleoprotein complexes: Mechanical basis of mRNA destabilization mediated by bacterial noncoding RNAs. Genes & Dev. 19: 2176-2186.
    • (2005) Genes & Dev , vol.19 , pp. 2176-2186
    • Morita, T.1    Maki, K.2    Aiba, H.3
  • 30
    • 0032932638 scopus 로고    scopus 로고
    • Function, mechanism, and regulation of bacterial ribonucleases
    • Nicholson, A.W. 1999. Function, mechanism, and regulation of bacterial ribonucleases. FEMS Microbiol. Rev. 23: 371-390.
    • (1999) FEMS Microbiol. Rev , vol.23 , pp. 371-390
    • Nicholson, A.W.1
  • 33
    • 22144485555 scopus 로고    scopus 로고
    • Doughnuts dealing with RNA
    • Pruijn, G.J. 2005. Doughnuts dealing with RNA. Nat. Struct. Mol. Biol. 12: 562-564.
    • (2005) Nat. Struct. Mol. Biol , vol.12 , pp. 562-564
    • Pruijn, G.J.1
  • 34
    • 28244471582 scopus 로고    scopus 로고
    • Regulation of ompA mRNA stability: The role of a small regulatory RNA in growth phase-dependent control
    • Rasmussen, A.A., Eriksen, M., Gilany, K., Udesen, C., Franch, T., Petersen, C., and Valetin-Hansen, P. 2005. Regulation of ompA mRNA stability: The role of a small regulatory RNA in growth phase-dependent control. Mol. Microbiol. 58: 1421-1429.
    • (2005) Mol. Microbiol , vol.58 , pp. 1421-1429
    • Rasmussen, A.A.1    Eriksen, M.2    Gilany, K.3    Udesen, C.4    Franch, T.5    Petersen, C.6    Valetin-Hansen, P.7
  • 35
    • 0242400018 scopus 로고    scopus 로고
    • Degradation of mRNA in bacteria: Emergence of ubiquitous features
    • Régnier, P. and Arraiano, C.M. 2000. Degradation of mRNA in bacteria: Emergence of ubiquitous features. Bioessays 22: 235-244.
    • (2000) Bioessays , vol.22 , pp. 235-244
    • Régnier, P.1    Arraiano, C.M.2
  • 37
    • 33748705968 scopus 로고    scopus 로고
    • Identification of a novel regulatory protein (CsrD) that targets the global regulatory RNAs CsrB and CsrC for degradation by RNase E
    • Suzuki, K., Babitzke, P., Kushner, S.R., and Romeo, T. 2006. Identification of a novel regulatory protein (CsrD) that targets the global regulatory RNAs CsrB and CsrC for degradation by RNase E. Genes & Dev. 20: 2605-2617.
    • (2006) Genes & Dev , vol.20 , pp. 2605-2617
    • Suzuki, K.1    Babitzke, P.2    Kushner, S.R.3    Romeo, T.4
  • 38
    • 34047094398 scopus 로고    scopus 로고
    • Sigma E controls biogenesis of the antisense RNA MicA
    • doi: 10.1093/nar/gkl1154
    • Udekwu, K.I. and Wagner, E.G. 2007. Sigma E controls biogenesis of the antisense RNA MicA. Nucleic Acids Res. 35: 1279-1288. doi: 10.1093/nar/gkl1154.
    • (2007) Nucleic Acids Res , vol.35 , pp. 1279-1288
    • Udekwu, K.I.1    Wagner, E.G.2
  • 40
    • 1642565815 scopus 로고    scopus 로고
    • The bacterial Sm-like protein Hfq: A key player in RNA transactions
    • Valentin-Hansen, P., Eriksen, M., and Udesen, C. 2004. The bacterial Sm-like protein Hfq: A key player in RNA transactions. Mol. Microbiol. 51: 1525-1533.
    • (2004) Mol. Microbiol , vol.51 , pp. 1525-1533
    • Valentin-Hansen, P.1    Eriksen, M.2    Udesen, C.3
  • 41
    • 24144440749 scopus 로고    scopus 로고
    • Effect of the increased stability of the penicillin amidase mRNA on the protein expression levels
    • Viegas, S.C., Schmidt, D., Kasche, V., Arraiano, C.M., and Ignatova, Z. 2005. Effect of the increased stability of the penicillin amidase mRNA on the protein expression levels. FEBS Lett. 579: 5069-5073.
    • (2005) FEBS Lett , vol.579 , pp. 5069-5073
    • Viegas, S.C.1    Schmidt, D.2    Kasche, V.3    Arraiano, C.M.4    Ignatova, Z.5
  • 43
    • 0028945837 scopus 로고
    • RNA degradation in Escherichia coli regulated by 3′ adenylation and 5′ phosphorylation
    • Xu, F. and Cohen, S.N. 1995. RNA degradation in Escherichia coli regulated by 3′ adenylation and 5′ phosphorylation. Nature 374: 180-183.
    • (1995) Nature , vol.374 , pp. 180-183
    • Xu, F.1    Cohen, S.N.2
  • 44
    • 33749072017 scopus 로고    scopus 로고
    • Structural basis for processivity and single-strand specificity of RNase II
    • Zuo, Y., Vincent, H.A., Zhang, J., Wang, Y., Deutscher, M.P., and Malhotra, A. 2006. Structural basis for processivity and single-strand specificity of RNase II. Mol. Cell 24: 149-156.
    • (2006) Mol. Cell , vol.24 , pp. 149-156
    • Zuo, Y.1    Vincent, H.A.2    Zhang, J.3    Wang, Y.4    Deutscher, M.P.5    Malhotra, A.6


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