CsdA, a cold-shock RNA helicase from Escherichia coli, is involved in the biogenesis of 50S ribosomal subunit

Nucleic Acids Research

Volumn 32, Issue 9, 2004, Pages 2751-2759

  Charollais, Julie ^a   Dreyfus, Marc ^a   Iost, Isabelle ^a  

^a ECOLE NORMALE SUPÉRIEURE   (France)

Author keywords

[No Author keywords available]

Indexed keywords

COLD SHOCK DEAD BOX PROTEIN A; COLD SHOCK PROTEIN; ESCHERICHIA COLI PROTEIN; RNA HELICASE; RNA PRECURSOR; SMALL SUBUNIT RIBOSOMAL RNA; UNCLASSIFIED DRUG; BACTERIAL RNA; DEAD BOX PROTEIN; DEAD PROTEIN, E COLI; PROTEIN SUBUNIT; RIBOSOME PROTEIN; RNA 23S;

ARTICLE; BACTERIAL STRAIN; BIOACCUMULATION; BIOGENESIS; CONTROLLED STUDY; ENZYME ACTIVITY; ESCHERICHIA COLI; GENE DELETION; GENE OVEREXPRESSION; GENE REARRANGEMENT; LOW TEMPERATURE; MOLECULAR INTERACTION; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN ASSEMBLY; PROTEIN CONTENT; PROTEIN FUNCTION; RIBOSOME SUBUNIT; RNA ANALYSIS; RNA SYNTHESIS; SUCROSE GRADIENT; WILD TYPE; CHEMISTRY; COLD; ENZYMOLOGY; GENETICS; GROWTH, DEVELOPMENT AND AGING; METABOLISM; MOLECULAR WEIGHT; PHENOTYPE; POLYSOME; RIBOSOME;

ESCHERICHIA COLI;

COLD; DEAD-BOX RNA HELICASES; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; GENE DELETION; MOLECULAR WEIGHT; PHENOTYPE; POLYRIBOSOMES; PROTEIN SUBUNITS; RIBOSOMAL PROTEINS; RIBOSOMES; RNA HELICASES; RNA PRECURSORS; RNA, BACTERIAL; RNA, RIBOSOMAL, 23S;

EID: 2542557396     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkh603     Document Type: Article

References (41)

1. Linder,P., Lasko,P.F., Ashburner,M., Leroy,P., Nielsen,P.J., Nishi,K., Schnier,J. and Slonimski,P.P. (1989) Birth of the DEAD box. Nature, 337, 121-122.
2. Tanner,N.K. and Linder,P. (2001) DExD/H box RNA helicases: from generic motors to specific dissociation functions. Mol. Cell., 8, 251-262.
3. de la Cruz,J., Kressler,D. and Linder,P. (1999) Unwinding RNA in Saccharomyces cerevisiae: DEAD-box proteins and related families. Trends Biochem. Sci., 24, 192-198.
4. Lorsch,J.R. (2002) RNA chaperones exist and DEAD box proteins get a life. Cell, 109, 797-800.
5. Linder,P., Tanner,N.K. and Banroques,J. (2001) From RNA helicases to RNPases. Trends Biochem. Sci., 26, 339-341.
6. Schwer,B. (2001) A new twist on RNA helicases: DExH/D box proteins as RNPases. Nature Struct. Biol., 8, 113-116.
7. Srivastava,A.K. and Schlessinger,D. (1990) Mechanism and regulation of bacteria] ribosomal RNA processing. Annu. Rev. Microbiol., 44, 105-129.
8. Nierhaus,K.H. (1991) The assembly of prokaryotic ribosomes. Biochimie, 73, 739-755.
9. Williamson,J.R. (2003) After the ribosome structures: how are the subunits assembled? RNA, 9, 165-167.
10. El Hage,A., Sbai,M. and Alix,J.H. (2001) The chaperonin GroEL and other heat-shock proteins, besides DnaK, participate in ribosome biogenesis in Escherichia coli. Mol. Gen. Genet., 264, 796-808.
11. Maki,J.A., Schnobrich,D.J. and Culver,G.M. (2002) The DnaK chaperone system facilitates 30S ribosomal subunit assembly. Mol. Cell., 10, 129-138.
12. Alix,J.H. and Nierhaus,K.H. (2003) DnaK-facilitated ribosome assembly in Escherichia coli revisited. RNA, 9, 787-793.
13. Maki,J.A., Southworth,D.R. and Culver,G.M. (2003) Demonstration of the role of the DnaK chaperone system in assembly of 30S ribosomal subunits using a purified in vitro system. RNA, 9, 1418-1421.
14. Kressler,D., Linder,P. and de la Cruz,J. (1999) Protein trans-acting factors involved in ribosome biogenesis in Saccharomyces cerevisiae. Mol. Cell. Biol., 19, 7897-7912.
15. Kalman,M., Murphy,H. and Cashel,M. (1991) rhlB, a new Escherichia coli K-12 gene with an RNA helicase-like protein sequence motif, one of at least five such possible genes in a prokaryote. New Biologist, 3, 886-895.
16. Charollais,J., Pflieger,D., Vinh,J., Dreyfus,M. and Iost,I. (2003) The DEAD-box RNA helicase SrmB is involved in the assembly of 50S ribosomal subunits in Escherichia coli. Mol. Microbiol., 48, 1253-1265.
17. Jones,P.G., Mitta,M., Kim,Y., Jiang,W. and Inouye,M. (1996) Cold shock induces a major ribosomal-associated protein that unwinds double-stranded RNA in Escherichia coli. Proc. Natl Acad. Sci. USA, 93, 76-80.
18. Toone,W.M., Rudd,K.E. and Friesen,J.D. (1991) deaD, a new Escherichia coli gene encoding a presumed ATP-dependent RNA helicase, can suppress a mutation in rpsB, the gene encoding ribosomal protein S2. J. Bact., 173, 3291-3302.
19. Moll,I., Grill,S., Gründling,A. and Bläsi,U. (2002) Effects of ribosomal proteins S1, S2 and the DeaD/CsdA DEAD-box helicase on translation of leaderless and canonical mRNAs in Escherichia coli. Mol. Microbiol., 44, 1387-1396.
20. Lu,J., Aoki,H. and Ganoza,M.C. (1999) Molecular characterization of a prokaryotic translation factor homologous to the eukaryotic initiation factor eIF4A. Int. J. Biochem. Cell Biol., 31, 215-229.
21. Iost,I. and Dreyfus,M. (1994) mRNAs can be stabilized by DEAD-box proteins. Nature, 372, 193-196.
22. Brandi,A., Spurio,R., Gualerzi,C.O. and Pon,C.L. (1999) Massive presence of the Escherichia coli 'major cold-shock protein' CspA under non-stress conditions. EMBO J., 18, 1653-1659.
23. Yamanaka,K. and Inouye,M. (2001) Selective mRNA degradation by polynucleotide phosphorylase in cold shock adaptation in Escherichia coli. J. Bact., 183, 2808-2816.
24. Britton,R.A., Powell,B.S., Dasgupta,S., Sun,Q., Margolin,W., Lupski,J.R. and Court,D.L. (1998) Cell cycle arrest in Era GTPase mutants: a potential growth rate-regulated checkpoint in Escherichia coli. Mol. Microbiol., 27, 739-750.
25. Link,A.J., Phillips,D. and Church,G.M. (1997) Methods for generating precise deletions and insertions in the genome of wild-type Escherichia coli: application to open reading frame characterization. J. Bact., 179, 6228-6237.
26. Sirdeshmukh,R. and Schlessinger,D. (1985) Ordered processing of Escherichia coli 23S rRNA in vitro. Nucleic Acids Res., 13, 5041-5054.
27. Allas,U., Liiv,A. and Remme,J. (2003) Functional interaction between RNase III and the Escherichia coli ribosome. BMC Mol. Biol., 4, 8.
28. Srivastava,A.K. and Schlessinger,D. (1988) Coregulation of processing and translation: mature 5′ termini of Escherichia coli 23S ribosomal RNA form in polysomes. Proc. Natl Acad. Sci. USA, 85, 7144-7148.
29. Herold,M. and Nierhaus,K.H. (1987) Incorporation of six additional proteins to complete the assembly map of the 50 S subunit from Escherichia coli ribosomes. J. Biol. Chem., 262, 8826-8833.
30. Lindahl,L. (1975) Intermediates and time kinetics of the in vivo assembly of Escherichia coli ribosomes. J. Mol. Biol., 92, 15-37.
31. Nierhaus,K.H., Bordasch,K. and Homann,H.E. (1973) Ribosomal proteins. XLIII. In vivo assembly of Escherichia coli ribosomal proteins. J. Mol. Biol., 74, 587-597.
32. Bizebard,T., Ferlenghi,I., Iost,I. and Dreyfus,M. (2004) Studies on three E. coli DEAD-box helicases point to an unwinding mechanism different from that of model DNA beficases. Biochemistry, in press.
33. Bollen,A., Lathe,R., Herzog,A., Denicourt,D., Lecocq,J.P., Desmarez,L. and Lavallé,R. (1979) A conditionally lethal mutation of Escherichia coli affecting the gene coding for ribosomal protein S2 (rpsB). J. Mol. Biol., 132, 219-233.,
34. Raynal,L.C. and Carpousis,A.J. (1999) Poly(A) polymerase I of Escherichia coli: characterization of the catalytic domain, an RNA binding site and regions for the interaction with proteins involved in mRNA degradation. Mol. Microbiol., 32, 765-775.
35. Py,B., Higgins,C.F., Krisch,H.M. and Carpousis,A.J. (1996) A DEAD-box RNA helicase in the Escherichia coli RNA degradosome. Nature, 381, 169-172.
36. Miczak,A., Kaberdin,V.R., Wei,C.L. and Lin-Chao,S. (1996) Proteins associated with RNase E in a multicomponent ribonucleolytic complex. Proc. Natl Acad. Sci. USA, 93, 3865-3869.
37. Beran,R.K. and Simons,R.W. (2001) Cold-temperature induction of Escherichia coli polynucleotide phosphorylase occurs by reversal of its autoregulation. Mol. Microbiol., 39, 112-125.
38. Silverman,E., Edwalds-Gilbert,G. and Lin,R.J. (2003) DExD/H-box proteins and their partners: helping RNA helicases unwind. Gene, 312, 1-16.
39. Kossen,K., Karginov,F.V. and Uhlenbeck,O.C. (2002) The carboxy-terminal domain of the DExDH protein YxiN is sufficient to confer specificity for 23S rRNA. J. Mol. Biol., 324, 625-636.
40. Nicol,S.M. and Fuller-Pace,F.V. (1995) The 'DEAD box' protein DbpA interacts specifically with the peptidyltransferase center in 23S rRNA. Proc. Natl Acad. Sci. USA, 92, 11681-11685.
41. Diges,C.M. and Uhlenbeck,O.C. (2001) Escherichia coli DbpA is an RNA helicase that requires hairpin 92 of 23S rRNA. EMBO J., 20, 5503-5512.