-
1
-
-
64049116097
-
The molecular alarmone (p)ppGpp mediates stress responses, vancomycin tolerance, and virulence in Enterococcus faecalis
-
Abranches, J., A. R. Martinez, J. K. Kajfasz, V. Chavez, D. A. Garsin, and J. A. Lemos. 2009. The molecular alarmone (p)ppGpp mediates stress responses, vancomycin tolerance, and virulence in Enterococcus faecalis. J. Bacteriol. 191:2248-2256.
-
(2009)
J. Bacteriol.
, vol.191
, pp. 2248-2256
-
-
Abranches, J.1
Martinez, A.R.2
Kajfasz, J.K.3
Chavez, V.4
Garsin, D.A.5
Lemos, J.A.6
-
2
-
-
0023846697
-
Stringent and growth control of rRNA synthesis in Escherichia coli are both mediated by ppGpp
-
Baracchini, E., and H. Bremer. 1988. Stringent and growth control of rRNA synthesis in Escherichia coli are both mediated by ppGpp. J. Biol. Chem. 263:2597-2602.
-
(1988)
J. Biol. Chem.
, vol.263
, pp. 2597-2602
-
-
Baracchini, E.1
Bremer, H.2
-
3
-
-
30344476728
-
New horizons for (p)ppGpp in bacterial and plant physiology
-
DOI 10.1016/j.tim.2005.11.006, PII S0966842X05003112
-
Braeken, K., M. Moris, R. Daniels, J. Vanderleyden, and J. Michiels. 2006. New horizons for (p)ppGpp in bacterial and plant physiology. Trends Microbiol. 14:45-54. (Pubitemid 43063191)
-
(2006)
Trends in Microbiology
, vol.14
, Issue.1
, pp. 45-54
-
-
Braeken, K.1
Moris, M.2
Daniels, R.3
Vanderleyden, J.4
Michiels, J.5
-
4
-
-
33645106095
-
RNA 3′-tail synthesis in Streptomyces: In vitro and in vivo activities of RNase PH, the SCO3896 gene product and PNPase
-
Bralley, P., B. Gust, S. A. Chang, K. F. Chater, and G. H. Jones. 2006. RNA 3′-tail synthesis in Streptomyces: in vitro and in vivo activities of RNase PH, the SCO3896 gene product and PNPase. Microbiology 152:627-636.
-
(2006)
Microbiology
, vol.152
, pp. 627-636
-
-
Bralley, P.1
Gust, B.2
Chang, S.A.3
Chater, K.F.4
Jones, G.H.5
-
5
-
-
0041923884
-
Overexpression of the polynucleotide phosphorylase gene (pnp) of Streptomyces antibioticus affects mRNA stability and poly(A) tail length but not ppGpp levels
-
Bralley, P., and G. H. Jones. 2003. Overexpression of the polynucleotide phosphorylase gene (pnp) of Streptomyces antibioticus affects mRNA stability and poly(A) tail length but not ppGpp levels. Microbiology 149:2173-2182.
-
(2003)
Microbiology
, vol.149
, pp. 2173-2182
-
-
Bralley, P.1
Jones, G.H.2
-
6
-
-
0003174053
-
The stringent response
-
F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.), ASM Press, Washington, DC
-
Cashel, M., D. R. Gentry, V. J. Hernandez, and D. Vinella. 1996. The stringent response, p. 1458-1496. In F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.), Escherichia coli and Salmonella: cellular and molecular biology. ASM Press, Washington, DC.
-
(1996)
Escherichia Coli and Salmonella: Cellular and Molecular Biology
, pp. 1458-1496
-
-
Cashel, M.1
Gentry, D.R.2
Hernandez, V.J.3
Vinella, D.4
-
7
-
-
0030922782
-
The ppGpp synthetase gene (relA) of Streptomyces coelicolor A3(2) plays a conditional role in antibiotic production and morphological differentiation
-
Chakraburtty, R., and M. J. Bibb. 1997. The ppGpp synthetase gene (relA) of Streptomyces coelicolor A3(2) plays a conditional role in antibiotic production and morphological differentiation. J. Bacteriol. 179:5854-5864.
-
(1997)
J. Bacteriol.
, vol.179
, pp. 5854-5864
-
-
Chakraburtty, R.1
Bibb, M.J.2
-
8
-
-
0030049731
-
Cloning and characterization and disruption of a (p)ppGpp synthetase gene (relA) of Streptomyces coelicolor A3(2)
-
Chakraburtty, R., J. White, E. Takano, and M. J. Bibb. 1996. Cloning and characterization and disruption of a (p)ppGpp synthetase gene (relA) of Streptomyces coelicolor A3(2). Mol. Microbiol. 19:357-368.
-
(1996)
Mol. Microbiol.
, vol.19
, pp. 357-368
-
-
Chakraburtty, R.1
White, J.2
Takano, E.3
Bibb, M.J.4
-
9
-
-
37549012162
-
Kinetics of polynucleotide phosphorylase: Comparison of enzymes from Streptomyces and Escherichia coli and effects of nucleoside diphosphates
-
Chang, S. A., M. Cozad, G. A. Mackie, and G. H. Jones. 2008. Kinetics of polynucleotide phosphorylase: comparison of enzymes from Streptomyces and Escherichia coli and effects of nucleoside diphosphates. J. Bacteriol. 190:98-106.
-
(2008)
J. Bacteriol.
, vol.190
, pp. 98-106
-
-
Chang, S.A.1
Cozad, M.2
Mackie, G.A.3
Jones, G.H.4
-
10
-
-
0004216822
-
-
2nd ed. John Wiley & Sons, Inc., New York, NY
-
Copeland, R. A. 2000. Enzymes: a practical introduction to structure, mechanism, and data analysis, 2nd ed. John Wiley & Sons, Inc., New York, NY.
-
(2000)
Enzymes: A Practical Introduction to Structure, Mechanism, and Data Analysis
-
-
Copeland, R.A.1
-
11
-
-
33745463774
-
Growth phase-dependent regulation of the extracytoplasmic stress factor, sigmaE, by guanosine 3′,5′-bispyrophosphate (ppGpp)
-
Costanzo, A., and S. E. Ades. 2006. Growth phase-dependent regulation of the extracytoplasmic stress factor, sigmaE, by guanosine 3′,5′- bispyrophosphate (ppGpp). J. Bacteriol. 188:4627-4634.
-
(2006)
J. Bacteriol.
, vol.188
, pp. 4627-4634
-
-
Costanzo, A.1
Ades, S.E.2
-
12
-
-
37749024824
-
ppGpp and DksA likely regulate the activity of the extracytoplasmic stress factor sigmaE in Escherichia coli by both direct and indirect mechanisms
-
Costanzo, A., H. Nicoloff, S. E. Barchinger, A. B. Banta, R. L. Gourse, and S. E. Ades. 2008. ppGpp and DksA likely regulate the activity of the extracytoplasmic stress factor sigmaE in Escherichia coli by both direct and indirect mechanisms. Mol. Microbiol. 67:619-632.
-
(2008)
Mol. Microbiol.
, vol.67
, pp. 619-632
-
-
Costanzo, A.1
Nicoloff, H.2
Barchinger, S.E.3
Banta, A.B.4
Gourse, R.L.5
Ades, S.E.6
-
13
-
-
38649092391
-
Transcription profiling of the stringent response in Escherichia coli
-
Durfee, T., A. M. Hansen, H. Zhi, F. R. Blattner, and D. J. Jin. 2008. Transcription profiling of the stringent response in Escherichia coli. J. Bacteriol. 190:1084-1096.
-
(2008)
J. Bacteriol.
, vol.190
, pp. 1084-1096
-
-
Durfee, T.1
Hansen, A.M.2
Zhi, H.3
Blattner, F.R.4
Jin, D.J.5
-
14
-
-
0034745295
-
The stringent response, sigmaH-dependent gene expression and sporulation in Bacillus subtilis
-
Eymann, C., G. Mittenhuber, and M. Hecker. 2001. The stringent response, sigmaH-dependent gene expression and sporulation in Bacillus subtilis. Mol. Gen. Genet. 264:913-923.
-
(2001)
Mol. Gen. Genet.
, vol.264
, pp. 913-923
-
-
Eymann, C.1
Mittenhuber, G.2
Hecker, M.3
-
15
-
-
0025102288
-
Guanosine 3′-diphosphate 5′-diphosphate is not required for growth rate-dependent control of rRNA synthesis in Escherichia coli
-
Gaal, T., and R. L. Gourse. 1990. Guanosine 3′-diphosphate 5′-diphosphate is not required for growth rate-dependent control of rRNA synthesis in Escherichia coli. Proc. Natl. Acad. Sci. U. S. A. 87:5533-5537.
-
(1990)
Proc. Natl. Acad. Sci. U. S. A.
, vol.87
, pp. 5533-5537
-
-
Gaal, T.1
Gourse, R.L.2
-
16
-
-
42949154408
-
Streptomyces clavuligerus relA-null mutants overproduce clavulanic acid and cephamycin C: Negative regulation of secondary metabolism by (p)ppGpp
-
Gomez-Escribano, J. P., J. F. Martin, A. Hesketh, M. J. Bibb, and P. Liras. 2008. Streptomyces clavuligerus relA-null mutants overproduce clavulanic acid and cephamycin C: negative regulation of secondary metabolism by (p)ppGpp. Microbiology 154:744-755.
-
(2008)
Microbiology
, vol.154
, pp. 744-755
-
-
Gomez-Escribano, J.P.1
Martin, J.F.2
Hesketh, A.3
Bibb, M.J.4
Liras, P.5
-
17
-
-
0036175162
-
Role of spoT-dependent ppGpp accumulation in the survival of light-exposed starved bacteria
-
Gong, L., K. Takayama, and S. Kjelleberg. 2002. Role of spoT-dependent ppGpp accumulation in the survival of light-exposed starved bacteria. Microbiology 148:559-570.
-
(2002)
Microbiology
, vol.148
, pp. 559-570
-
-
Gong, L.1
Takayama, K.2
Kjelleberg, S.3
-
18
-
-
33745466674
-
General pathway for turning on promoters transcribed by RNA polymerases containing alternative sigma factors
-
Gourse, R. L., W. Ross, and S. T. Rutherford. 2006. General pathway for turning on promoters transcribed by RNA polymerases containing alternative sigma factors. J. Bacteriol. 188:4589-4591.
-
(2006)
J. Bacteriol.
, vol.188
, pp. 4589-4591
-
-
Gourse, R.L.1
Ross, W.2
Rutherford, S.T.3
-
19
-
-
0025353849
-
Guanosine tetraphosphate (ppGpp) dependence of the growth rate control of rrnB P1 promoter activity in Escherichia coli
-
Hernandez, V. J., and H. Bremer. 1990. Guanosine tetraphosphate (ppGpp) dependence of the growth rate control of rrnB P1 promoter activity in Escherichia coli. J. Biol. Chem. 265:11605-11614. (Pubitemid 20219323)
-
(1990)
Journal of Biological Chemistry
, vol.265
, Issue.20
, pp. 11605-11614
-
-
Hernandez, V.J.1
Bremer, H.2
-
20
-
-
38349086492
-
The global role of ppGpp synthesis in morphological differentiation and antibiotic production in Streptomyces coelicolor A3(2)
-
Hesketh, A., W. J. Chen, J. Ryding, S. Chang, and M. Bibb. 2007. The global role of ppGpp synthesis in morphological differentiation and antibiotic production in Streptomyces coelicolor A3(2). Genome Biol. 8:R161.
-
(2007)
Genome Biol.
, vol.8
-
-
Hesketh, A.1
Chen, W.J.2
Ryding, J.3
Chang, S.4
Bibb, M.5
-
21
-
-
0035181472
-
Induction of ppGpp synthesis in Streptomyces coelicolor A3(2) grown under conditions of nutritional sufficiency elicits actII-orf4 transcription and actinorhodin biosynthesis
-
Hesketh, A., J. Sun, and M. J. Bibb. 2001. Induction of ppGpp synthesis in Streptomyces coelicolor A3(2) grown under conditions of nutritional sufficiency elicits actII-orf4 transcription and actinorhodin biosynthesis. Mol. Microbiol. 39:136-141.
-
(2001)
Mol. Microbiol.
, vol.39
, pp. 136-141
-
-
Hesketh, A.1
Sun, J.2
Bibb, M.J.3
-
22
-
-
0033053011
-
relA is required for actinomycin production in Streptomyces antibioticus
-
Hoyt, S., and G. H. Jones. 1999. relA is required for actinomycin production in Streptomyces antibioticus. J. Bacteriol. 181:3824-3829.
-
(1999)
J. Bacteriol.
, vol.181
, pp. 3824-3829
-
-
Hoyt, S.1
Jones, G.H.2
-
23
-
-
0028272880
-
Purification and properties of ATP:GTP 3′-pyrophosphotransferase (guanosine pentaphosphate synthetase) from Streptomyces antibioticus
-
Jones, G. H. 1994. Purification and properties of ATP:GTP 3′-pyrophosphotransferase (guanosine pentaphosphate synthetase) from Streptomyces antibioticus. J. Bacteriol. 176:1475-1481.
-
(1994)
J. Bacteriol.
, vol.176
, pp. 1475-1481
-
-
Jones, G.H.1
-
24
-
-
0029974966
-
Guanosine pentaphosphate synthetase from Streptomyces antibioticus is also a polynucleotide phosphorylase
-
Jones, G. H., and M. J. Bibb. 1996. Guanosine pentaphosphate synthetase from Streptomyces antibioticus is also a polynucleotide phosphorylase. J. Bacteriol. 178:4281-4288.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 4281-4288
-
-
Jones, G.H.1
Bibb, M.J.2
-
25
-
-
0346305936
-
Overexpression and purification of untagged polynucleotide phosphorylases
-
Jones, G. H., M. F. Symmons, J. S. Hankins, and G. A. Mackie. 2003. Overexpression and purification of untagged polynucleotide phosphorylases. Protein Expr. Purif. 32:202-209.
-
(2003)
Protein Expr. Purif.
, vol.32
, pp. 202-209
-
-
Jones, G.H.1
Symmons, M.F.2
Hankins, J.S.3
Mackie, G.A.4
-
26
-
-
0003869903
-
-
The John Innes Foundation, Norwich, England
-
Kieser, T., M. J. Bibb, M. J. Buttner, K. F. Chater, and D. A. Hopwood. 2000. Practical Streptomyces genetics. The John Innes Foundation, Norwich, England.
-
(2000)
Practical Streptomyces Genetics
-
-
Kieser, T.1
Bibb, M.J.2
Buttner, M.J.3
Chater, K.F.4
Hopwood, D.A.5
-
27
-
-
0030771435
-
Guanosine tetra- And pentaphosphate promote accumulation of inorganic polyphosphate in Escherichia coli
-
DOI 10.1074/jbc.272.34.21240
-
Kuroda, A., H. Murphy, M. Cashel, and A. Kornberg. 1997. Guanosine tetraand pentaphosphate promote accumulation of inorganic polyphosphate in Escherichia coli. J. Biol. Chem. 272:21240-21243. (Pubitemid 27373988)
-
(1997)
Journal of Biological Chemistry
, vol.272
, Issue.34
, pp. 21240-21243
-
-
Kuroda, A.1
Murphy, H.2
Cashel, M.3
Kornberg, A.4
-
28
-
-
17544367082
-
A relA/spoT homologous gene from Streptomyces coelicolor A3(2) controls antibiotic biosynthetic genes
-
Martinez-Costa, O. H., P. Arias, N. M. Romero, V. Parro, R. P. Mellado, and F. Malpartida. 1996. A relA/spoT homologous gene from Streptomyces coelicolor A3(2) controls antibiotic biosynthetic genes. J. Biol. Chem. 271:10627-10634.
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 10627-10634
-
-
Martinez-Costa, O.H.1
Arias, P.2
Romero, N.M.3
Parro, V.4
Mellado, R.P.5
Malpartida, F.6
-
29
-
-
0034710943
-
Polynucleotide phosphorylase functions both as a 3′-5′ exonuclease and a poly(A) polymerase in Escherichia coli
-
Mohanty, B. K., and S. R. Kushner. 2000. Polynucleotide phosphorylase functions both as a 3′-5′ exonuclease and a poly(A) polymerase in Escherichia coli. Proc. Natl. Acad. Sci. U. S. A. 97:11966-11971.
-
(2000)
Proc. Natl. Acad. Sci. U. S. A.
, vol.97
, pp. 11966-11971
-
-
Mohanty, B.K.1
Kushner, S.R.2
-
30
-
-
0023626550
-
Metabolic initiation of differentiation and secondary metabolism by Streptomyces griseus: Significance of the stringent response (ppGpp) and GTP content in relation to a factor
-
Ochi, K. 1987. Metabolic initiation of differentiation and secondary metabolism by Streptomyces griseus: significance of the stringent response (ppGpp) and GTP content in relation to A factor. J. Bacteriol. 169:3608-3616.
-
(1987)
J. Bacteriol.
, vol.169
, pp. 3608-3616
-
-
Ochi, K.1
-
32
-
-
0021212172
-
Effect of serine hydroxamate and methyl α-D-glucopyranoside treatment on nucleoside polyphosphate pools, RNA and protein accumulation in Streptomyces hygroscopicus
-
Riesenberg, D., F. Bergter, and C. Kari. 1984. Effect of serine hydroxamate and methyl alpha-D-glucopyranoside treatment on nucleoside polyphosphate pools, RNA and protein accumulation in Streptomyces hygroscopicus. J. Gen. Microbiol. 130:2549-2558. (Pubitemid 14016444)
-
(1984)
Journal of General Microbiology
, vol.130
, Issue.10
, pp. 2549-2558
-
-
Riesenberg, D.1
Bergter, F.2
Kari, C.3
-
33
-
-
0004136246
-
-
2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(1989)
Molecular Cloning
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
-
34
-
-
0345097567
-
The Streptomyces coelicolor polynucleotide phosphorylase homologue, and not the putative poly(A) polymerase can polyadenylate RNA
-
Sohlberg, B., J. Huang, and S. N. Cohen. 2003. The Streptomyces coelicolor polynucleotide phosphorylase homologue, and not the putative poly(A) polymerase can polyadenylate RNA. J. Bacteriol. 185:7273-7278.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 7273-7278
-
-
Sohlberg, B.1
Huang, J.2
Cohen, S.N.3
-
35
-
-
42149158392
-
Control of bacterial transcription, translation and replication by (p)ppGpp
-
Srivatsan, A., and J. D. Wang. 2008. Control of bacterial transcription, translation and replication by (p)ppGpp. Curr. Opin. Microbiol. 11:100-105.
-
(2008)
Curr. Opin. Microbiol.
, vol.11
, pp. 100-105
-
-
Srivatsan, A.1
Wang, J.D.2
-
36
-
-
0026030777
-
The stringent response in Streptomyces coelicolor A3(2)
-
Strauch, E., E. Takano, H. A. Bayliss, and M. J. Bibb. 1991. The stringent response in Streptomyces coelicolor A3(2). Mol. Microbiol. 5:289-298.
-
(1991)
Mol. Microbiol.
, vol.5
, pp. 289-298
-
-
Strauch, E.1
Takano, E.2
Bayliss, H.A.3
Bibb, M.J.4
-
37
-
-
0034435974
-
A duplicated fold is the structural basis for polynucleotide phosphorylase catalytic activity, processivity, and regulation
-
DOI 10.1016/S0969-2126(00)00521-9, PII S0969212600005219
-
Symmons, M., G. H. Jones, and B. Luisi. 2000. A duplicated fold is the structural basis for polynucleotide phosphorylase catalytic activity, processivity and regulation. Structure 8:1215-1226. (Pubitemid 32667486)
-
(2000)
Structure
, vol.8
, Issue.11
, pp. 1215-1226
-
-
Symmons, M.F.1
Jones, G.H.2
Luisi, B.F.3
-
38
-
-
0025992789
-
Residual guanosine 3′,5′-bispyrophosphate synthetic activity of relA null mutants can be eliminated by spoT null mutations
-
Xiao, H., M. Kalman, K. Ikehara, S. Zemel, G. Glaser, and M. Cashel. 1991. Residual guanosine 3′,5′-bispyrophosphate synthetic activity of relA null mutants can be eliminated by spoT null mutations. J. Biol. Chem. 266:5980-5990. (Pubitemid 21909592)
-
(1991)
Journal of Biological Chemistry
, vol.266
, Issue.9
, pp. 5980-5990
-
-
Xiao, H.1
Kalman, M.2
Ikehara, K.3
Zemel, S.4
Glaser, G.5
Cashel, M.6
-
39
-
-
0035283033
-
Exoribonuclease superfamilies: Structural analysis and phylogenetic distribution
-
Zuo, Y., and M. P. Deutscher. 2001. Exoribonuclease superfamilies: structural analysis and phylogenetic distribution. Nucleic Acids Res. 29:1017-1026.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 1017-1026
-
-
Zuo, Y.1
Deutscher, M.P.2
|