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Volumn 7, Issue 5, 2012, Pages

Examining the fish microbiome: Vertebrate-derived bacteria as an environmental niche for the discovery of unique marine natural products

Author keywords

[No Author keywords available]

Indexed keywords

2,3,4,5 TETRAHYDROSEBASTENOIC ACID; DNA 16S; NATURAL PRODUCT; RUBIGINOSIC ACID; SEBASTENOIC ACID; UNCLASSIFIED DRUG; UNSATURATED FATTY ACID; BIOLOGICAL PRODUCT;

EID: 84860537219     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0035398     Document Type: Article
Times cited : (77)

References (51)
  • 2
    • 80055020580 scopus 로고    scopus 로고
    • Highlights of marine invertebrate-derived biosynthetic products: Their biomedical potential and possible production by microbial associants
    • Radjasa OK, Vaske YM, Navarro G, Vervoort HC, Tenney K, et al. (2011) Highlights of marine invertebrate-derived biosynthetic products: Their biomedical potential and possible production by microbial associants. Bioorg Med Chem 19: 6658-6674.
    • (2011) Bioorg Med Chem , vol.19 , pp. 6658-6674
    • Radjasa, O.K.1    Vaske, Y.M.2    Navarro, G.3    Vervoort, H.C.4    Tenney, K.5
  • 3
    • 66349117644 scopus 로고    scopus 로고
    • Chasing the treasures of the sea - bacterial marine natural products
    • Gulder TAM, Moore BS, (2009) Chasing the treasures of the sea- bacterial marine natural products. Curr Opin Microbiol 12: 252-260.
    • (2009) Curr Opin Microbiol , vol.12 , pp. 252-260
    • Gulder, T.A.M.1    Moore, B.S.2
  • 4
    • 54849405130 scopus 로고    scopus 로고
    • Renaissance in antibacterial discovery from actinomycetes
    • Baltz RH, (2008) Renaissance in antibacterial discovery from actinomycetes. Curr Opin Pharmacol 8: 557-563.
    • (2008) Curr Opin Pharmacol , vol.8 , pp. 557-563
    • Baltz, R.H.1
  • 5
    • 70350722394 scopus 로고    scopus 로고
    • Genomic basis for natural product biosynthetic diversity in the actinomycetes
    • Nett M, Ikeda H, Moore BS, (2009) Genomic basis for natural product biosynthetic diversity in the actinomycetes. Nat Prod Rep 26: 1362-1384.
    • (2009) Nat Prod Rep , vol.26 , pp. 1362-1384
    • Nett, M.1    Ikeda, H.2    Moore, B.S.3
  • 6
    • 77649305354 scopus 로고    scopus 로고
    • Natural Products Version 2.0: Connecting Genes to Molecules
    • Walsh CT, Fischbach MA, (2010) Natural Products Version 2.0: Connecting Genes to Molecules. J Am Chem Soc 132: 2469-2493.
    • (2010) J Am Chem Soc , vol.132 , pp. 2469-2493
    • Walsh, C.T.1    Fischbach, M.A.2
  • 7
    • 65349186325 scopus 로고    scopus 로고
    • Entomopathogenic bacteria as a source of secondary metabolites
    • Bode HB, (2009) Entomopathogenic bacteria as a source of secondary metabolites. Curr Opin Chem Biol 13: 224-230.
    • (2009) Curr Opin Chem Biol , vol.13 , pp. 224-230
    • Bode, H.B.1
  • 8
    • 79959811774 scopus 로고    scopus 로고
    • Bacterial symbionts and natural products
    • Crawford JM, Clardy J, (2011) Bacterial symbionts and natural products. Chem Commun 47: 7559-7566.
    • (2011) Chem Commun , vol.47 , pp. 7559-7566
    • Crawford, J.M.1    Clardy, J.2
  • 9
    • 77950403672 scopus 로고    scopus 로고
    • Deep-Sea Hydrothermal Vents: Potential Hot Spots for Natural Products Discovery?
    • Thornburg CC, Zabriskie TM, McPhail KL, (2010) Deep-Sea Hydrothermal Vents: Potential Hot Spots for Natural Products Discovery? J Nat Prod 73: 489-499.
    • (2010) J Nat Prod , vol.73 , pp. 489-499
    • Thornburg, C.C.1    Zabriskie, T.M.2    McPhail, K.L.3
  • 10
    • 79955924211 scopus 로고    scopus 로고
    • Comparison of the diversity of the bacterial communities in the intestinal tract of adult Bactrocera dorsalis from three different populations
    • Wang H, Jin L, Zhang H, (2011) Comparison of the diversity of the bacterial communities in the intestinal tract of adult Bactrocera dorsalis from three different populations. J Appl Microbiol 110: 1390-1401.
    • (2011) J Appl Microbiol , vol.110 , pp. 1390-1401
    • Wang, H.1    Jin, L.2    Zhang, H.3
  • 11
    • 79951601794 scopus 로고    scopus 로고
    • Sceliphrolactam, a Polyene Macrocyclic Lactam from a Wasp-Associated Streptomyces sp
    • Oh D-C, Poulsen M, Currie CR, Clardy J, (2011) Sceliphrolactam, a Polyene Macrocyclic Lactam from a Wasp-Associated Streptomyces sp. Org Lett 13: 752-755.
    • (2011) Org Lett , vol.13 , pp. 752-755
    • Oh, D.-C.1    Poulsen, M.2    Currie, C.R.3    Clardy, J.4
  • 12
    • 79952065838 scopus 로고    scopus 로고
    • Chemical Analyses of Wasp-Associated Streptomyces Bacteria Reveal a Prolific Potential for Natural Products Discovery
    • Poulsen M, Oh D-C, Clardy J, Currie CR, (2011) Chemical Analyses of Wasp-Associated Streptomyces Bacteria Reveal a Prolific Potential for Natural Products Discovery. Plos One 6: 8.
    • (2011) Plos One , vol.6 , pp. 8
    • Poulsen, M.1    Oh, D.-C.2    Clardy, J.3    Currie, C.R.4
  • 13
    • 78650215358 scopus 로고    scopus 로고
    • Pulicatins A-E, Neuroactive Thiazoline Metabolites from Cone Snail-Associated Bacteria
    • Lin Z, Antemano RR, Hughen RW, Tianero MDB, Peraud O, et al. (2010) Pulicatins A-E, Neuroactive Thiazoline Metabolites from Cone Snail-Associated Bacteria. J Nat Prod 73: 1922-1926.
    • (2010) J Nat Prod , vol.73 , pp. 1922-1926
    • Lin, Z.1    Antemano, R.R.2    Hughen, R.W.3    Tianero, M.D.B.4    Peraud, O.5
  • 14
    • 79958106628 scopus 로고    scopus 로고
    • Nobilamides A-H, Long-Acting Transient Receptor Potential Vanilloid-1 (TRPV1) Antagonists from Mollusk-Associated Bacteria
    • Lin Z, Reilly CA, Antemano R, Hughen RW, Marett L, et al. (2011) Nobilamides A-H, Long-Acting Transient Receptor Potential Vanilloid-1 (TRPV1) Antagonists from Mollusk-Associated Bacteria. J Med Chem 54: 3746-3755.
    • (2011) J Med Chem , vol.54 , pp. 3746-3755
    • Lin, Z.1    Reilly, C.A.2    Antemano, R.3    Hughen, R.W.4    Marett, L.5
  • 16
    • 79851514236 scopus 로고    scopus 로고
    • How to discover new antibiotics: harvesting the parvome
    • Davies J, (2011) How to discover new antibiotics: harvesting the parvome. Curr Opin Chem Biol 15: 5-10.
    • (2011) Curr Opin Chem Biol , vol.15 , pp. 5-10
    • Davies, J.1
  • 17
    • 32944466887 scopus 로고    scopus 로고
    • Ecological and evolutionary forces shaping microbial diversity in the human intestine
    • Ley RE, Peterson DA, Gordon JI, (2006) Ecological and evolutionary forces shaping microbial diversity in the human intestine. Cell 124: 837-848.
    • (2006) Cell , vol.124 , pp. 837-848
    • Ley, R.E.1    Peterson, D.A.2    Gordon, J.I.3
  • 20
    • 77953211760 scopus 로고    scopus 로고
    • Abundance, diversity, and activity of microbial assemblages associated with coral reef fish guts and feces
    • Smriga S, Sandin SA, Azam F, (2010) Abundance, diversity, and activity of microbial assemblages associated with coral reef fish guts and feces. FEMS Microbiol Ecol 73: 31-42.
    • (2010) FEMS Microbiol Ecol , vol.73 , pp. 31-42
    • Smriga, S.1    Sandin, S.A.2    Azam, F.3
  • 21
    • 34250639282 scopus 로고    scopus 로고
    • Microbial diversity of intestinal contents and mucus in rainbow trout (Oncorhynchus mykiss)
    • Kim DH, Brunt J, Austin B, (2007) Microbial diversity of intestinal contents and mucus in rainbow trout (Oncorhynchus mykiss). J Appl Microbiol 102: 1654-1664.
    • (2007) J Appl Microbiol , vol.102 , pp. 1654-1664
    • Kim, D.H.1    Brunt, J.2    Austin, B.3
  • 22
    • 70349437027 scopus 로고    scopus 로고
    • Characterization of the intestinal microbiota of two Antarctic notothenioid fish species
    • Ward NL, Steven B, Penn K, Methe BA, Detrich WH, (2009) Characterization of the intestinal microbiota of two Antarctic notothenioid fish species. Extremophiles 13: 679-685.
    • (2009) Extremophiles , vol.13 , pp. 679-685
    • Ward, N.L.1    Steven, B.2    Penn, K.3    Methe, B.A.4    Detrich, W.H.5
  • 23
    • 3242884054 scopus 로고    scopus 로고
    • Fine-scale phylogenetic architecture of a complex bacterial community
    • Acinas SG, Klepac-Ceraj V, Hunt DE, Pharino C, Ceraj I, et al. (2004) Fine-scale phylogenetic architecture of a complex bacterial community. Nature 430: 551-554.
    • (2004) Nature , vol.430 , pp. 551-554
    • Acinas, S.G.1    Klepac-Ceraj, V.2    Hunt, D.E.3    Pharino, C.4    Ceraj, I.5
  • 25
    • 78650647326 scopus 로고    scopus 로고
    • Has the Microbiota Played a Critical Role in the Evolution of the Adaptive Immune System?
    • Lee YK, Mazmanian SK, (2010) Has the Microbiota Played a Critical Role in the Evolution of the Adaptive Immune System? Science 330: 1768-1773.
    • (2010) Science , vol.330 , pp. 1768-1773
    • Lee, Y.K.1    Mazmanian, S.K.2
  • 26
    • 79954547410 scopus 로고    scopus 로고
    • Community Health Care: Therapeutic Opportunities in the Human Microbiome
    • Sonnenburg JL, Fischbach MA, (2011) Community Health Care: Therapeutic Opportunities in the Human Microbiome. Sci Transl Med 3: 5.
    • (2011) Sci Transl Med , vol.3 , pp. 5
    • Sonnenburg, J.L.1    Fischbach, M.A.2
  • 27
    • 78649895980 scopus 로고    scopus 로고
    • Vancomycin-resistant Enterococcus domination of intestinal microbiota is enabled by antibiotic treatment in mice and precedes bloodstream invasion in humans
    • Ubeda C, Taur Y, Jenq RR, Equinda MJ, Son T, et al. (2010) Vancomycin-resistant Enterococcus domination of intestinal microbiota is enabled by antibiotic treatment in mice and precedes bloodstream invasion in humans. J Clin Invest 120: 4332-4341.
    • (2010) J Clin Invest , vol.120 , pp. 4332-4341
    • Ubeda, C.1    Taur, Y.2    Jenq, R.R.3    Equinda, M.J.4    Son, T.5
  • 28
    • 0032849859 scopus 로고    scopus 로고
    • CAP3: A DNA sequence assembly program
    • Huang XQ, Madan A, (1999) CAP3: A DNA sequence assembly program. Genome Res 9: 868-877.
    • (1999) Genome Res , vol.9 , pp. 868-877
    • Huang, X.Q.1    Madan, A.2
  • 29
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG, (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25: 4876-4882.
    • (1997) Nucleic Acids Res , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 30
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods
    • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, et al. (2011) MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods. Mol Biol Evol 28: 2731-2739.
    • (2011) Mol Biol Evol , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5
  • 31
    • 84860532925 scopus 로고    scopus 로고
    • Antagonistic Potential of Streptomyces Associated with the Gut of Marine Ornamental Fishes
    • Sheeja MS, Selvakumar D, Dhevendaran, (2011) Antagonistic Potential of Streptomyces Associated with the Gut of Marine Ornamental Fishes. Middle-East J Sci Res 7: 327-334.
    • (2011) Middle-East J Sci Res , vol.7 , pp. 327-334
    • Sheeja, M.S.1    Selvakumar, D.2    Dhevendaran3
  • 32
    • 58149200948 scopus 로고    scopus 로고
    • The Ribosomal Database Project: improved alignments and new tools for rRNA analysis
    • Cole JR, Wang Q, Cardenas E, Fish J, Chai B, et al. (2009) The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic Acids Res 37: D141-D145.
    • (2009) Nucleic Acids Res , vol.37
    • Cole, J.R.1    Wang, Q.2    Cardenas, E.3    Fish, J.4    Chai, B.5
  • 33
    • 70349337156 scopus 로고    scopus 로고
    • Paraoerskovia marina gen. nov., sp nov., an actinobacterium isolated from marine sediment
    • Khan ST, Harayama S, Tamura T, Ando K, Takagi M, et al. (2009) Paraoerskovia marina gen. nov., sp nov., an actinobacterium isolated from marine sediment. Int J Syst Evol Microbiol 59: 2094-2098.
    • (2009) Int J Syst Evol Microbiol , vol.59 , pp. 2094-2098
    • Khan, S.T.1    Harayama, S.2    Tamura, T.3    Ando, K.4    Takagi, M.5
  • 35
    • 59249106365 scopus 로고    scopus 로고
    • Analysis of bacterial populations in the gut of developing cod larvae and identification of Vibrio logei, Vibrio anguillarum and Vibrio splendidus as pathogens of cod larvae
    • Reid HI, Treasurer JW, Adam B, Birkbeck TH, (2009) Analysis of bacterial populations in the gut of developing cod larvae and identification of Vibrio logei, Vibrio anguillarum and Vibrio splendidus as pathogens of cod larvae. Aquaculture 288: 36-43.
    • (2009) Aquaculture , vol.288 , pp. 36-43
    • Reid, H.I.1    Treasurer, J.W.2    Adam, B.3    Birkbeck, T.H.4
  • 36
    • 0004020467 scopus 로고    scopus 로고
    • Fish Disease: Diagnosis and Treatment
    • Noga EJ, (2010) Fish Disease: Diagnosis and Treatment. Ames: Wiley-Blackwell 193-196.
    • (2010) Ames: Wiley-Blackwell , pp. 193-196
    • Noga, E.J.1
  • 37
    • 78249286198 scopus 로고    scopus 로고
    • Antibacterials from the Sea
    • Hughes CC, Fenical W, (2010) Antibacterials from the Sea. Chem Eur J 16: 12512-12525.
    • (2010) Chem Eur J , vol.16 , pp. 12512-12525
    • Hughes, C.C.1    Fenical, W.2
  • 38
    • 77953288862 scopus 로고    scopus 로고
    • Enantioselective Analysis of Chiral Anteiso Fatty Acids in the Polar and Neutral Lipids of Food
    • Hauff S, Hottinger G, Vetter W, (2010) Enantioselective Analysis of Chiral Anteiso Fatty Acids in the Polar and Neutral Lipids of Food. Lipids 45: 357-365.
    • (2010) Lipids , vol.45 , pp. 357-365
    • Hauff, S.1    Hottinger, G.2    Vetter, W.3
  • 39
    • 85007793087 scopus 로고
    • Synthesis of both the Enantiomers of Aseanostatin P5 (Sarcinic Acid), An Inhibitor of Myeloperoxidase Release, and 4 Diastereomers of Aggreceride-A, A Platelet-Aggregation Inhibitor
    • Kitahara T, Aono S, Mori K, (1995) Synthesis of both the Enantiomers of Aseanostatin P5 (Sarcinic Acid), An Inhibitor of Myeloperoxidase Release, and 4 Diastereomers of Aggreceride-A, A Platelet-Aggregation Inhibitor. Biosci Biotech Biochem 59: 78-82.
    • (1995) Biosci Biotech Biochem , vol.59 , pp. 78-82
    • Kitahara, T.1    Aono, S.2    Mori, K.3
  • 40
    • 3242768984 scopus 로고    scopus 로고
    • New azaphilones from the inedible mushroom Hypoxylon rubiginosum
    • Quang DN, Hashimoto T, Stadler M, Asakawa Y, (2004) New azaphilones from the inedible mushroom Hypoxylon rubiginosum. J Nat Prod 67: 1152-1155.
    • (2004) J Nat Prod , vol.67 , pp. 1152-1155
    • Quang, D.N.1    Hashimoto, T.2    Stadler, M.3    Asakawa, Y.4
  • 41
    • 39049119384 scopus 로고    scopus 로고
    • A review on the interactions between gut microbiota and innate immunity of fish
    • Gomez GD, Balcazar JL, (2008) A review on the interactions between gut microbiota and innate immunity of fish. FEMS Immunol Med Microbiol 52: 145-154.
    • (2008) FEMS Immunol Med Microbiol , vol.52 , pp. 145-154
    • Gomez, G.D.1    Balcazar, J.L.2
  • 43
    • 20444488858 scopus 로고    scopus 로고
    • Culturable marine actinomycete diversity from tropical Pacific Ocean sediments
    • Jensen PR, Gontang E, Mafnas C, Mincer TJ, Fenical W, (2005) Culturable marine actinomycete diversity from tropical Pacific Ocean sediments. Environ Microbiol 7: 1039-1048.
    • (2005) Environ Microbiol , vol.7 , pp. 1039-1048
    • Jensen, P.R.1    Gontang, E.2    Mafnas, C.3    Mincer, T.J.4    Fenical, W.5
  • 44
    • 63049120723 scopus 로고    scopus 로고
    • Actinomycetes for Marine Drug Discovery Isolated from Mangrove Soils and Plants in China
    • Hong K, Gao AH, Xie QY, Gao H, Zhuang L, et al. (2009) Actinomycetes for Marine Drug Discovery Isolated from Mangrove Soils and Plants in China. Mar Drugs 7: 495-496.
    • (2009) Mar Drugs , vol.7 , pp. 495-496
    • Hong, K.1    Gao, A.H.2    Xie, Q.Y.3    Gao, H.4    Zhuang, L.5
  • 45
    • 0028308089 scopus 로고
    • Phylogenetic Analysis of the Hyperthermophilic Pink Filament Community in Octopus Spring, Yellowstone-National-Park
    • Reysenbach AL, Wickham GS, Pace NR, (1994) Phylogenetic Analysis of the Hyperthermophilic Pink Filament Community in Octopus Spring, Yellowstone-National-Park. Appl Environ Microbiol 60: 2113-2119.
    • (1994) Appl Environ Microbiol , vol.60 , pp. 2113-2119
    • Reysenbach, A.L.1    Wickham, G.S.2    Pace, N.R.3
  • 46
    • 0035795219 scopus 로고    scopus 로고
    • Design and evaluation of PCR primers to amplify bacterial 16S ribosomal DNA fragments used for community fingerprinting
    • Watanabe K, Kodama Y, Harayama S, (2001) Design and evaluation of PCR primers to amplify bacterial 16S ribosomal DNA fragments used for community fingerprinting. J Microbiol Methods 44: 253-262.
    • (2001) J Microbiol Methods , vol.44 , pp. 253-262
    • Watanabe, K.1    Kodama, Y.2    Harayama, S.3
  • 47
    • 15944395584 scopus 로고    scopus 로고
    • Marine actinomycetes related to the 'Salinospora' group from the Great Barrier Reef sponge Pseudoceratina clavata
    • Kim TK, Garson MJ, Fuerst JA, (2005) Marine actinomycetes related to the 'Salinospora' group from the Great Barrier Reef sponge Pseudoceratina clavata. Environ Microbiol 7: 509-518.
    • (2005) Environ Microbiol , vol.7 , pp. 509-518
    • Kim, T.K.1    Garson, M.J.2    Fuerst, J.A.3
  • 48
    • 0019296687 scopus 로고
    • A Simple Method for Estimating Evolutionary Rates of Base Substitutions Through Comparative Studies of Nucleotide-Sequences
    • Kimura M, (1980) A Simple Method for Estimating Evolutionary Rates of Base Substitutions Through Comparative Studies of Nucleotide-Sequences. J Mol Evol 16: 111-120.
    • (1980) J Mol Evol , vol.16 , pp. 111-120
    • Kimura, M.1
  • 49
    • 0000461280 scopus 로고
    • Confidence-Limits on Phylogenies - an Approach Using the Bootstrap
    • Felsenstein J, (1985) Confidence-Limits on Phylogenies- an Approach Using the Bootstrap. Evolution 39: 783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 50
    • 0023375195 scopus 로고
    • The Neighbor-Joining Method - A New Method for Reconstructing Phylogenetic Trees
    • Saitou N, Nei M, (1987) The Neighbor-Joining Method- A New Method for Reconstructing Phylogenetic Trees. Mol Biol Evol 4: 406-425.
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 51
    • 3342920601 scopus 로고    scopus 로고
    • Prospects for inferring very large phylogenies by using the neighbor-joining method
    • Tamura K, Nei M, Kumar S, (2004) Prospects for inferring very large phylogenies by using the neighbor-joining method. Proc Natl Acad Sci USA 101: 11030-11035.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 11030-11035
    • Tamura, K.1    Nei, M.2    Kumar, S.3


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