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Volumn 73, Issue 1, 2010, Pages 31-42

Abundance, diversity, and activity of microbial assemblages associated with coral reef fish guts and feces

Author keywords

16S rRNA gene phylogeny; Bacteria abundance; Hydrolytic enzymes; Photobacterium; Vibrio

Indexed keywords

BACTERIAL DNA; RNA 16S;

EID: 77953211760     PISSN: 01686496     EISSN: 15746941     Source Type: Journal    
DOI: 10.1111/j.1574-6941.2010.00879.x     Document Type: Article
Times cited : (139)

References (36)
  • 2
    • 0002294523 scopus 로고
    • Organic and caloric levels of fish feces relative to its consumption by coprophagous reef fishes
    • Bailey TG Robertson DR (1982) Organic and caloric levels of fish feces relative to its consumption by coprophagous reef fishes. Mar Biol 69 : 45 50.
    • (1982) Mar Biol , vol.69 , pp. 45-50
    • Bailey, T.G.1    Robertson, D.R.2
  • 3
    • 0035175399 scopus 로고    scopus 로고
    • Bacterial control of silicon regeneration from diatom detritus: Significance of bacterial ectohydrolases and species identity
    • Bidle KD Azam F (2001) Bacterial control of silicon regeneration from diatom detritus: significance of bacterial ectohydrolases and species identity. Limnol Oceanogr 46 : 1606 1623.
    • (2001) Limnol Oceanogr , vol.46 , pp. 1606-1623
    • Bidle, K.D.1    Azam, F.2
  • 4
    • 0000767553 scopus 로고    scopus 로고
    • Fermentation and gastrointestinal microorganisms in fishes
    • Mackie, R.I. White, B.A. Isaacson, R.E. eds), Springer
    • Clements KD (1997) Fermentation and gastrointestinal microorganisms in fishes. Gastrointestinal Microbiology, Vol. 1 (Mackie RI, White BA Isaacson RE, eds), pp. 156 198. Springer
    • (1997) Gastrointestinal Microbiology , vol.1 , pp. 156-198
    • Clements, K.D.1
  • 5
    • 85152814290 scopus 로고    scopus 로고
    • Feeding and nutrition
    • Evans, D.H. Claiborne, J.B. eds), Taylor and Francis Group
    • Clements KD Raubenheimer D (2006) Feeding and nutrition. The Physiology of Fishes (Evans DH Claiborne JB, eds), pp. 47 82. Taylor and Francis Group
    • (2006) The Physiology of Fishes , pp. 47-82
    • Clements, K.D.1    Raubenheimer, D.2
  • 6
    • 33847284121 scopus 로고    scopus 로고
    • Clostridia dominate 16S rRNA gene libraries prepared from the hindgut of temperate marine herbivorous fishes
    • Clements KD, Pasch IBY, Moran D Turner SJ (2007) Clostridia dominate 16S rRNA gene libraries prepared from the hindgut of temperate marine herbivorous fishes. Mar Biol 150 : 1431 1440.
    • (2007) Mar Biol , vol.150 , pp. 1431-1440
    • Clements, K.D.1    Pasch, I.B.Y.2    Moran, D.3    Turner, S.J.4
  • 7
    • 0037388225 scopus 로고    scopus 로고
    • Understanding bias in microbial community analysis techniques due to rrn operon copy number heterogeneity
    • Crosby LD Criddle CS (2003) Understanding bias in microbial community analysis techniques due to rrn operon copy number heterogeneity. Biotechniques 34 : 790 802.
    • (2003) Biotechniques , vol.34 , pp. 790-802
    • Crosby, L.D.1    Criddle, C.S.2
  • 8
    • 0022444941 scopus 로고
    • Strain variation in bacteriocuprein superoxide dismutase from symbiotic Photobacterium leiognathi
    • Dunlap PV Steinman HM (1986) Strain variation in bacteriocuprein superoxide dismutase from symbiotic Photobacterium leiognathi. J Bacteriol 165 : 393 398.
    • (1986) J Bacteriol , vol.165 , pp. 393-398
    • Dunlap, P.V.1    Steinman, H.M.2
  • 9
    • 77953189500 scopus 로고    scopus 로고
    • Studies on biological properties of Vibrio qinhuangdaora sp. nov. isolated from diseased flounder Paralichthys olivaceus
    • Fang H, Chen C-Z Zhang X-J (2005) Studies on biological properties of Vibrio qinhuangdaora sp. nov. isolated from diseased flounder Paralichthys olivaceus. Acta Hydrob Sin 29 : 366 371.
    • (2005) Acta Hydrob Sin , vol.29 , pp. 366-371
    • Fang, H.1    Chen, C.-Z.2    Zhang, X.-J.3
  • 11
    • 0033133556 scopus 로고    scopus 로고
    • Distribution of microbial assemblages in the Central Arctic Ocean Basin studied by PCR/DGGE: Analysis of a large data set
    • Ferrari VC Hollibaugh JT (1999) Distribution of microbial assemblages in the Central Arctic Ocean Basin studied by PCR/DGGE: analysis of a large data set. Hydrobiologia 401 : 55 68.
    • (1999) Hydrobiologia , vol.401 , pp. 55-68
    • Ferrari, V.C.1    Hollibaugh, J.T.2
  • 12
    • 0002098271 scopus 로고
    • A unique symbiosis in the gut of tropical herbivorous surgeonfish (Acanthuridae, Teleostei) from the Red Sea
    • Fishelson L, Montgomery WL Myrberg AA (1985) A unique symbiosis in the gut of tropical herbivorous surgeonfish (Acanthuridae, Teleostei) from the Red Sea. Science 229 : 49 51.
    • (1985) Science , vol.229 , pp. 49-51
    • Fishelson, L.1    Montgomery, W.L.2    Myrberg, A.A.3
  • 13
    • 48749098431 scopus 로고    scopus 로고
    • Gradients of coastal fish farm effluents and their effect on coral reef microbes
    • Garren M, Smriga S Azam F (2008) Gradients of coastal fish farm effluents and their effect on coral reef microbes. Environ Microbiol 10 : 2299 2312.
    • (2008) Environ Microbiol , vol.10 , pp. 2299-2312
    • Garren, M.1    Smriga, S.2    Azam, F.3
  • 14
    • 0002217327 scopus 로고
    • Significance of exoenzymatic activities in the ecology of Brackish water - Measurements by means of methylumbelliferyl substrates
    • Hoppe HG (1983) Significance of exoenzymatic activities in the ecology of Brackish water - measurements by means of methylumbelliferyl substrates. Mar Ecol-Prog Ser 11 : 299 308.
    • (1983) Mar Ecol-Prog ser , vol.11 , pp. 299-308
    • Hoppe, H.G.1
  • 15
    • 0021567284 scopus 로고
    • Role of bacteria in copepod fecal pellet decomposition - Colonization, growth rates and mineralization
    • Jacobsen TR Azam F (1984) Role of bacteria in copepod fecal pellet decomposition - colonization, growth rates and mineralization. B Mar Sci 35 : 495 502.
    • (1984) B Mar Sci , vol.35 , pp. 495-502
    • Jacobsen, T.R.1    Azam, F.2
  • 16
    • 64549127761 scopus 로고    scopus 로고
    • The nonrandom microheterogeneity of 16S rRNA genes in Vibrio splendidus may reflect adaptation to versatile lifestyles
    • Jensen S, Frost P Torsvik VL (2009) The nonrandom microheterogeneity of 16S rRNA genes in Vibrio splendidus may reflect adaptation to versatile lifestyles. FEMS Microbiol Lett 294 : 207 215.
    • (2009) FEMS Microbiol Lett , vol.294 , pp. 207-215
    • Jensen, S.1    Frost, P.2    Torsvik, V.L.3
  • 17
    • 0027833493 scopus 로고
    • Fate of particle-bound bacteria ingested by Calanus pacificus
    • Lawrence SG, Ahmad A Azam F (1993) Fate of particle-bound bacteria ingested by Calanus pacificus. Mar Ecol-Prog Ser 97 : 299 307.
    • (1993) Mar Ecol-Prog ser , vol.97 , pp. 299-307
    • Lawrence, S.G.1    Ahmad, A.2    Azam, F.3
  • 18
    • 46249085739 scopus 로고    scopus 로고
    • Evolution of mammals and their gut microbes
    • Ley RE, Hamady M, Lozupone C et al 2008) Evolution of mammals and their gut microbes. Science 320 : 1647 1651.
    • (2008) Science , vol.320 , pp. 1647-1651
    • Ley, R.E.1    Hamady, M.2    Lozupone, C.3
  • 19
    • 20444440388 scopus 로고    scopus 로고
    • An improved method for counting bacteria from sediments and turbid environments by epifluorescence microscopy
    • Lunau M, Lemke A, Walther K, Martens-Habbena W Simon M (2005) An improved method for counting bacteria from sediments and turbid environments by epifluorescence microscopy. Environ Microbiol 7 : 961 968.
    • (2005) Environ Microbiol , vol.7 , pp. 961-968
    • Lunau, M.1    Lemke, A.2    Walther, K.3    Martens-Habbena, W.4    Simon, M.5
  • 20
    • 4544322209 scopus 로고    scopus 로고
    • Vibrio ponticus sp. nov., a neighbour of V. fluvialis-V. furnissii clade, isolated from Gilthead sea bream, mussels and seawater
    • Macian MC, Garay E, Grimont PAD Pujalte MJ (2004) Vibrio ponticus sp. nov., a neighbour of V. fluvialis-V. furnissii clade, isolated from Gilthead sea bream, mussels and seawater. Syst Appl Microbiol 27 : 535 540.
    • (2004) Syst Appl Microbiol , vol.27 , pp. 535-540
    • MacIan, M.C.1    Garay, E.2    Grimont, P.A.D.3    Pujalte, M.J.4
  • 21
    • 84988168824 scopus 로고
    • Migrating haemulid fishes as a source of nutrients and organic matter on coral reefs
    • Meyer JL Schultz ET (1985) Migrating haemulid fishes as a source of nutrients and organic matter on coral reefs. Limnol Oceanogr 30 : 146 156.
    • (1985) Limnol Oceanogr , vol.30 , pp. 146-156
    • Meyer, J.L.1    Schultz, E.T.2
  • 22
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S ribosomal RNA
    • Muyzer G, Dewaal EC Uitterlinden AG (1993) Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S ribosomal RNA. Appl Environ Microb 59 : 695 700.
    • (1993) Appl Environ Microb , vol.59 , pp. 695-700
    • Muyzer, G.1    Dewaal, E.C.2    Uitterlinden, A.G.3
  • 23
    • 37549027613 scopus 로고    scopus 로고
    • SILVA: A comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
    • Pruesse E, Quast C, Knittel K, Fuchs BM, Ludwig WG, Peplies J Glockner FO (2007) SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res 35 : 7188 7196.
    • (2007) Nucleic Acids Res , vol.35 , pp. 7188-7196
    • Pruesse, E.1    Quast, C.2    Knittel, K.3    Fuchs, B.M.4    Ludwig, W.G.5    Peplies, J.6    Glockner, F.O.7
  • 24
    • 0023582599 scopus 로고
    • Fermentative microbial digestion in herbivorous fishes
    • Rimmer DW Wiebe WJ (1987) Fermentative microbial digestion in herbivorous fishes. J Fish Biol 31 : 229 236.
    • (1987) J Fish Biol , vol.31 , pp. 229-236
    • Rimmer, D.W.1    Wiebe, W.J.2
  • 25
    • 0000017403 scopus 로고
    • Fish feces as fish food on a Pacific coral reef
    • Robertson DR (1982) Fish feces as fish food on a Pacific coral reef. Mar Ecol-Prog Ser 7 : 253 265.
    • (1982) Mar Ecol-Prog ser , vol.7 , pp. 253-265
    • Robertson, D.R.1
  • 26
    • 40149088432 scopus 로고    scopus 로고
    • Baselines and degradation of coral reefs in the northern line islands
    • Sandin SA, Smith JE, DeMartini EE et al 2008) Baselines and degradation of coral reefs in the northern line islands. PLoS ONE 3 : e1548.
    • (2008) PLoS ONE , vol.3 , pp. 1548
    • Sandin, S.A.1    Smith, J.E.2    Demartini, E.E.3
  • 27
    • 15444362001 scopus 로고    scopus 로고
    • Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness
    • Schloss PD Handelsman J (2005) Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl Environ Microb 71 : 1501 1506.
    • (2005) Appl Environ Microb , vol.71 , pp. 1501-1506
    • Schloss, P.D.1    Handelsman, J.2
  • 28
    • 0026616183 scopus 로고
    • Intense hydrolytic enzyme activity on marine aggregates and implications for rapid particle dissolution
    • Smith DC, Simon M, Alldredge AL Azam F (1992) Intense hydrolytic enzyme activity on marine aggregates and implications for rapid particle dissolution. Nature 359 : 139 142.
    • (1992) Nature , vol.359 , pp. 139-142
    • Smith, D.C.1    Simon, M.2    Alldredge, A.L.3    Azam, F.4
  • 29
    • 0031893151 scopus 로고    scopus 로고
    • Contributions of microbes in vertebrate gastrointestinal tract to production and conservation of nutrients
    • Stevens CE Hume ID (1998) Contributions of microbes in vertebrate gastrointestinal tract to production and conservation of nutrients. Physiol Rev 78 : 393 427.
    • (1998) Physiol Rev , vol.78 , pp. 393-427
    • Stevens, C.E.1    Hume, I.D.2
  • 32
    • 0036566806 scopus 로고    scopus 로고
    • Heteroduplexes in mixed-template amplifications: Formation, consequence and elimination by 'reconditioning PCR'
    • Thompson JR, Marcelino LA Polz MF (2002) Heteroduplexes in mixed-template amplifications: formation, consequence and elimination by 'reconditioning PCR'. Nucleic Acids Res 30 : 2083 2088.
    • (2002) Nucleic Acids Res , vol.30 , pp. 2083-2088
    • Thompson, J.R.1    Marcelino, L.A.2    Polz, M.F.3
  • 33
    • 34548293679 scopus 로고    scopus 로고
    • Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
    • Wang Q, Garrity GM, Tiedje JM Cole JR (2007) Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 73 : 5261 5267.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 5261-5267
    • Wang, Q.1    Garrity, G.M.2    Tiedje, J.M.3    Cole, J.R.4
  • 35
    • 0034904198 scopus 로고    scopus 로고
    • Feces in aquatic ecosystems
    • Wotton RS Malmquist B (2001) Feces in aquatic ecosystems. Bioscience 51 : 537 544.
    • (2001) Bioscience , vol.51 , pp. 537-544
    • Wotton, R.S.1    Malmquist, B.2
  • 36
    • 34347349134 scopus 로고    scopus 로고
    • Identification and pathogenicity of Vibrio ponticus affecting cultured Japanese sea bass, Lateolabrax japonicus (Cuvier in Cuvier and Valenciennes)
    • Xie ZY, Hu CQ, Zhang LP, Chen C, Ren CH Shen Q (2007) Identification and pathogenicity of Vibrio ponticus affecting cultured Japanese sea bass, Lateolabrax japonicus (Cuvier in Cuvier and Valenciennes). Lett Appl Microbiol 45 : 62 67.
    • (2007) Lett Appl Microbiol , vol.45 , pp. 62-67
    • Xie, Z.Y.1    Hu, C.Q.2    Zhang, L.P.3    Chen, C.4    Ren, C.H.5    Shen, Q.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.