-
1
-
-
0036083396
-
The ubiquitin-proteasome proteolytic pathway: Destruction for the sake of construction
-
Glickman MH, Ciechanover A (2002) The ubiquitin-proteasome proteolytic pathway: Destruction for the sake of construction. Physiol Rev 82:373-428.
-
(2002)
Physiol. Rev.
, vol.82
, pp. 373-428
-
-
Glickman, M.H.1
Ciechanover, A.2
-
2
-
-
2442437350
-
Isolation of a polypeptide that has lymphocyte-differentiating properties and is probably represented universally in living cells
-
Goldstein G, Scheid M, Hammerling U, et al (1975) Isolation of a polypeptide that has lymphocyte-differentiating properties and is probably represented universally in living cells. Proc Natl Acad Sci USA 72:11-15.
-
(1975)
Proc. Natl. Acad. Sci. USA
, vol.72
, pp. 11-15
-
-
Goldstein, G.1
Scheid, M.2
Hammerling, U.3
-
3
-
-
27344451113
-
The discovery of ubiquitin- dependent proteolysis
-
Wilkinson KD (2005) The discovery of ubiquitin- dependent proteolysis. Proc Natl Acad Sci USA 102 15280-15282.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 15280-15282
-
-
Wilkinson, K.D.1
-
4
-
-
0023644679
-
Structure of ubiquitin refi ned at 1.8 A resolution
-
Vijay-Kumar S, Bugg CE, Cook WJ (1987) Structure of ubiquitin refi ned at 1.8 A resolution. J Mol Biol 194:531-544.
-
(1987)
J. Mol. Biol.
, vol.194
, pp. 531-544
-
-
Vijay-Kumar, S.1
Bugg, C.E.2
Cook, W.J.3
-
5
-
-
0022080874
-
Three-dimensional structure of ubiquitin at 2.8 A resolution
-
Vijay-Kumar S, Bugg CE, Wilkinson KD, Cook,WJ (1985) Three-dimensional structure of ubiquitin at 2.8 A resolution. Proc Natl Acad Sci U S A 82:3582-3585.
-
(1985)
Proc. Natl. Acad. Sci. U S A
, vol.82
, pp. 3582-3585
-
-
Vijay-Kumar, S.1
Bugg, C.E.2
Wilkinson, K.D.3
Cook, W.J.4
-
6
-
-
0028961335
-
SCOP: A structural classifi cation of proteins database for the investigation of sequences and structures
-
Murzin AG, Brenner SE, Hubbard T, Chothia C (1995) SCOP: A structural classifi cation of proteins database for the investigation of sequences and structures. J Mol Biol 247:536-540.
-
(1995)
J. Mol. Biol.
, vol.247
, pp. 536-540
-
-
Murzin, A.G.1
Brenner, S.E.2
Hubbard, T.3
Chothia, C.4
-
7
-
-
0001011321
-
Comparison of threedimensional structures of homologous proteins
-
Overington JP (1992) Comparison of threedimensional structures of homologous proteins. Curr Opin. Struct. Biol. 2:394-401.
-
(1992)
Curr Opin. Struct. Biol.
, vol.2
, pp. 394-401
-
-
Overington, J.P.1
-
8
-
-
0026325259
-
Similarity of protein G and ubiquitin
-
Kraulis PJ (1991) Similarity of protein G and ubiquitin. Science 254:581-582.
-
(1991)
Science
, vol.254
, pp. 581-582
-
-
Kraulis, P.J.1
-
9
-
-
0038434056
-
A superfamily of protein tags: Ubiquitin SUMO and related modifi ers
-
Schwartz DC, and Hochstrasser M (2003) A superfamily of protein tags: ubiquitin SUMO and related modifi ers. Trends Biochem Sci 28:321-328.
-
(2003)
Trends Biochem. Sci.
, vol.28
, pp. 321-328
-
-
Schwartz, D.C.1
Hochstrasser, M.2
-
10
-
-
0035292759
-
Themes and variations on ubiquitylation
-
Weissman AM (2001) Themes and variations on ubiquitylation. Nat Rev Mol Cell Biol 2:169-178.
-
(2001)
Nat. Rev. Mol. Cell Biol.
, vol.2
, pp. 169-178
-
-
Weissman, A.M.1
-
11
-
-
0034677757
-
A protein conjugation system in yeast with homology to biosynthetic enzyme reaction of prokaryotes
-
Furukawa K, Mizushima N, Noda T, Ohsumi Y (2000) A protein conjugation system in yeast with homology to biosynthetic enzyme reaction of prokaryotes. J Biol Chem 275:7462-7465.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 7462-7465
-
-
Furukawa, K.1
Mizushima, N.2
Noda, T.3
Ohsumi, Y.4
-
12
-
-
0032563798
-
A protein conjugation system essential for autophagy
-
Mizushima N, Noda T, Yoshimori T et al. (1998) A protein conjugation system essential for autophagy. Nature 395:395-398.
-
(1998)
Nature
, vol.395
, pp. 395-398
-
-
Mizushima, N.1
Noda, T.2
Yoshimori, T.3
-
13
-
-
0030695339
-
Characterization of NEDD8 a developmentally down-regulated ubiquitin-like protein
-
Kamitani T, Kito K, Nguyen HP, Yeh ET (1997) Characterization of NEDD8 a developmentally down-regulated ubiquitin-like protein. J Biol Chem 272:28557-28562.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 28557-28562
-
-
Kamitani, T.1
Kito, K.2
Nguyen, H.P.3
Yeh, E.T.4
-
14
-
-
9644278013
-
SUMO protein modifi cation
-
Dohmen RJ (2004) SUMO protein modifi cation. Biochim Biophys Acta 1695:113-131.
-
(2004)
Biochim. Biophys. Acta.
, vol.1695
, pp. 113-131
-
-
Dohmen, R.J.1
-
15
-
-
15944406765
-
SUMO: A history of modifi - Cation
-
Hay RT (2005) SUMO: A history of modifi - Cation. Mol Cell 18:1-12.
-
(2005)
Mol. Cell
, vol.18
, pp. 1-12
-
-
Hay, R.T.1
-
16
-
-
63649113699
-
Origin and function of ubiquitin-like proteins
-
Hochstrasser M (2009) Origin and function of ubiquitin-like proteins. Nature 458: 422-429.
-
(2009)
Nature
, vol.458
, pp. 422-429
-
-
Hochstrasser, M.1
-
17
-
-
8544230698
-
Rfaut novel ubiquitin-like domain in IkappaB kinase beta is required for functional activity of the kinase
-
May MJ, Larsen SE, Shim JH, et al (2004) A novel ubiquitin-like domain in IkappaB kinase beta is required for functional activity of the kinase. J Biol Chem 279:45528-45539.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 45528-45539
-
-
May, M.J.1
Larsen, S.E.2
Shim, J.H.3
-
18
-
-
27144535945
-
Ubx2 links the Cdc48 complex to ER-associated protein degradation
-
Neuber O, Jarosch E, Volkwein C, et al (2005) Ubx2 links the Cdc48 complex to ER-associated protein degradation. Nat Cell Biol 7:993-998.
-
(2005)
Nat. Cell Biol.
, vol.7
, pp. 993-998
-
-
Neuber, O.1
Jarosch, E.2
Volkwein, C.3
-
19
-
-
27144539523
-
Membrane-bound Ubx2 recruits Cdc48 to ubiquitin ligases and their substrates to ensure effi cient ER-associated protein degradation
-
Schuberth C, Buchberger A (2005) Membrane-bound Ubx2 recruits Cdc48 to ubiquitin ligases and their substrates to ensure effi cient ER-associated protein degradation. Nat Cell Biol 7:999-1006.
-
(2005)
Nat. Cell Biol.
, vol.7
, pp. 999-1006
-
-
Schuberth, C.1
Buchberger, A.2
-
20
-
-
0035895540
-
Apoptotic molecular machinery: Vastly increased complexity in vertebrates revealed by genome comparisons
-
Aravind L, Dixit VM, Koonin EV (2001) Apoptotic molecular machinery: Vastly increased complexity in vertebrates revealed by genome comparisons. Science 291:1279-1284.
-
(2001)
Science
, vol.291
, pp. 1279-1284
-
-
Aravind, L.1
Dixit, V.M.2
Koonin, E.V.3
-
21
-
-
0032585099
-
The ligation systems for ubiquitin and ubiquitinlike proteins
-
Tanaka K, Suzuki T, Chiba T (1998) The ligation systems for ubiquitin and ubiquitinlike proteins. Mol Cells 8:503-512.
-
(1998)
Mol. Cells
, vol.8
, pp. 503-512
-
-
Tanaka, K.1
Suzuki, T.2
Chiba, T.3
-
23
-
-
0034915764
-
Mechanisms underlying ubiquitination
-
Pickart CM (2001) Mechanisms underlying ubiquitination. Annu Rev Biochem 70:503-533.
-
(2001)
Annu. Rev. Biochem.
, vol.70
, pp. 503-533
-
-
Pickart, C.M.1
-
24
-
-
65649100877
-
Reconstructing the ubiquitin network: Cross-talk with other systems and identifi cation of novel functions
-
Venancio TM, Balaji S, Iyer LM, Aravind L (2009) Reconstructing the ubiquitin network: Cross-talk with other systems and identifi cation of novel functions. Genome Biol 10:R33.
-
(2009)
Genome Biol.
, vol.10
-
-
Venancio, T.M.1
Balaji, S.2
Iyer, L.M.3
Aravind, L.4
-
25
-
-
2442591389
-
Deubiquitinating enzymes: Their functions and substrate specifi city
-
Soboleva TA, Baker RT (2004) Deubiquitinating enzymes: Their functions and substrate specifi city. Curr Protein Pept Sci 5:191-200.
-
(2004)
Curr. Protein Pept. Sci.
, vol.5
, pp. 191-200
-
-
Soboleva, T.A.1
Baker, R.T.2
-
26
-
-
2442551473
-
Deubiquitinating enzymes are IN/(trinsic to proteasome function)
-
Guterman A, Glickman MH (2004) Deubiquitinating enzymes are IN/(trinsic to proteasome function). Curr Protein Pept Sci 5:201-211.
-
(2004)
Curr. Protein Pept. Sci.
, vol.5
, pp. 201-211
-
-
Guterman, A.1
Glickman, M.H.2
-
27
-
-
14644390170
-
Novel predicted peptidases with a potential role in the ubiquitin signaling pathway
-
Iyer LM, Koonin EV, Aravind L (2004) Novel predicted peptidases with a potential role in the ubiquitin signaling pathway. Cell Cycle 3:1440-1450.
-
(2004)
Cell Cycle
, vol.3
, pp. 1440-1450
-
-
Iyer, L.M.1
Koonin, E.V.2
Aravind, L.3
-
28
-
-
28344456279
-
A genomic and functional inventory of deubiquitinating enzymes
-
Nijman SM, Luna-Vargas MP, Velds A, et al (2005) A genomic and functional inventory of deubiquitinating enzymes. Cell 123:773-786.
-
(2005)
Cell
, vol.123
, pp. 773-786
-
-
Nijman, S.M.1
Luna-Vargas, M.P.2
Velds, A.3
-
29
-
-
0037401872
-
Deubiquitinating enzymes-The importance of driving in reverse along the ubiquitin-proteasome pathway
-
Wing SS (2003) Deubiquitinating enzymes- the importance of driving in reverse along the ubiquitin-proteasome pathway. Int J Biochem Cell Biol 35:590-605.
-
(2003)
Int. J. Biochem. Cell Biol.
, vol.35
, pp. 590-605
-
-
Wing, S.S.1
-
30
-
-
0033617335
-
The structure of threonyl- tRNA synthetase-tRNA(Thr) complex enlightens its repressor activity and reveals an essential zinc ion in the active site
-
Sankaranarayanan R, Dock-Bregeon AC, Romby P, et al (1999) The structure of threonyl- tRNA synthetase-tRNA(Thr) complex enlightens its repressor activity and reveals an essential zinc ion in the active site. Cell 97:371-381.
-
(1999)
Cell
, vol.97
, pp. 371-381
-
-
Sankaranarayanan, R.1
Dock-Bregeon, A.C.2
Romby, P.3
-
31
-
-
0032830481
-
Evolution of aminoacyl-tRNA synthetases-analysis of unique domain architectures and phylogenetic trees reveals a complex history of horizontal gene transfer events
-
Wolf YI, Aravind L, Grishin NV, Koonin EV (1999) Evolution of aminoacyl-tRNA synthetases-analysis of unique domain architectures and phylogenetic trees reveals a complex history of horizontal gene transfer events. Genome Res 9:689-710.
-
(1999)
Genome Res.
, vol.9
, pp. 689-710
-
-
Wolf, Y.I.1
Aravind, L.2
Grishin, N.V.3
Koonin, E.V.4
-
32
-
-
0242501574
-
The DCX-domain tandems of doublecortin and doublecortin-like kinase
-
Kim MH, Cierpicki T, Derewenda U, et al (2003) The DCX-domain tandems of doublecortin and doublecortin-like kinase. Nat Struct Biol 10:324-333.
-
(2003)
Nat. Struct. Biol.
, vol.10
, pp. 324-333
-
-
Kim, M.H.1
Cierpicki, T.2
Derewenda, U.3
-
33
-
-
0029107760
-
The 2.2 A crystal structure of the Ras-binding domain of the serine/threonine kinase c-Raf1 in complex with Rap1A and a GTP analogue
-
Nassar N, Horn G, Herrmann C, et al (1995) The 2.2 A crystal structure of the Ras-binding domain of the serine/threonine kinase c-Raf1 in complex with Rap1A and a GTP analogue. Nature 375:554-560.
-
(1995)
Nature
, vol.375
, pp. 554-560
-
-
Nassar, N.1
Horn, G.2
Herrmann, C.3
-
34
-
-
0035421216
-
Novel modular domain PB1 recognizes PC motif to mediate functional protein-protein interactions
-
Ito T, Matsui Y, Ago T, et al (2001) Novel modular domain PB1 recognizes PC motif to mediate functional protein-protein interactions. EMBO J 20:3938-3946.
-
(2001)
EMBO J.
, vol.20
, pp. 3938-3946
-
-
Ito, T.1
Matsui, Y.2
Ago, T.3
-
35
-
-
0034724536
-
Structure of the ERM protein moesin reveals the FERM domain fold masked by an extended actin binding tail domain
-
Pearson MA, Reczek D, Bretscher A, Karplus PA (2000) Structure of the ERM protein moesin reveals the FERM domain fold masked by an extended actin binding tail domain. Cell 101:259-270.
-
(2000)
Cell
, vol.101
, pp. 259-270
-
-
Pearson, M.A.1
Reczek, D.2
Bretscher, A.3
Karplus, P.A.4
-
36
-
-
34248222062
-
A novel superfamily containing the b-grasp fold involved in binding diverse soluble ligands
-
Burroughs AM, Balaji S, Iyer LM, Aravind L (2007) A novel superfamily containing the b-grasp fold involved in binding diverse soluble ligands. Biology Direct 2: 4 .
-
(2007)
Biology Direct.
, vol.2
, pp. 4
-
-
Burroughs, A.M.1
Balaji, S.2
Iyer, L.M.3
Aravind, L.4
-
37
-
-
33644872938
-
Structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus
-
Sazanov LA, Hinchliffe P (2006) Structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus. Science 311: 1430-1436.
-
(2006)
Science
, vol.311
, pp. 1430-1436
-
-
Sazanov, L.A.1
Hinchliffe, P.2
-
38
-
-
33645241987
-
Structural basis for mammalian vitamin B12 transport by transcobalamin
-
Wuerges J, Garau G, Geremia S, et al (2006) Structural basis for mammalian vitamin B12 transport by transcobalamin. Proc Natl Acad Sci U S A 103:4386-4391.
-
(2006)
Proc. Natl. Acad. Sci. U S A.
, vol.103
, pp. 4386-4391
-
-
Wuerges, J.1
Garau, G.2
Geremia, S.3
-
40
-
-
3142777798
-
Crystal structure of the toluene/o-xylene monooxygenasehydroxylasefromPseudomonas stutzeri OX1. Insight into the substrate specifi city substrate channeling and active site tuning of multicomponent monooxygenases
-
Sazinsky MH, Bard J, Di Donato A, Lippard SJ (2004) Crystal structure of the toluene/o-xylene monooxygenasehydroxylasefromPseudomonas stutzeri OX1. Insight into the substrate specifi city substrate channeling and active site tuning of multicomponent monooxygenases. J Biol Chem 279:30600-30610.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 30600-30610
-
-
Sazinsky, M.H.1
Bard, J.2
Di Donato, A.3
Lippard, S.J.4
-
41
-
-
33747219426
-
The prokaryotic antecedents of the ubiquitinsignaling system and the early evolution of ubiquitin-like beta-grasp domains
-
Iyer LM, Burroughs AM, Aravind L (2006) The prokaryotic antecedents of the ubiquitinsignaling system and the early evolution of ubiquitin-like beta-grasp domains. Genome Biol 7:R60.
-
(2006)
Genome Biol.
, vol.7
-
-
Iyer, L.M.1
Burroughs, A.M.2
Aravind, L.3
-
42
-
-
0035827332
-
Structural basis of transcription: An RNA polymerase II elongation complex at 3.3 A resolution
-
Gnatt AL Cramer P, Fu J, et al (2001) Structural basis of transcription: An RNA polymerase II elongation complex at 3.3 A resolution. Science 292:1876-1882.
-
(2001)
Science
, vol.292
, pp. 1876-1882
-
-
Gnatt, A.L.1
Cramer, P.2
Fu, J.3
-
43
-
-
0029111710
-
X-ray crystallography shows that translational initiation factor IF3 consists of two compact alpha/ beta domains linked by an alpha-helix
-
Biou V, Shu F, Ramakrishnan V (1995) X-ray crystallography shows that translational initiation factor IF3 consists of two compact alpha/ beta domains linked by an alpha-helix. EMBO J 14:4056-4064.
-
(1995)
EMBO J.
, vol.14
, pp. 4056-4064
-
-
Biou, V.1
Shu, F.2
Ramakrishnan, V.3
-
44
-
-
0028998987
-
Prokaryotic translation initiation factor IF3 is an elongated protein consisting of two crystallizable domains
-
Kycia JH, Biou V, Shu F, et al (1995) Prokaryotic translation initiation factor IF3 is an elongated protein consisting of two crystallizable domains. Biochemistry 34:6183-6187.
-
(1995)
Biochemistry
, vol.34
, pp. 6183-6187
-
-
Kycia, J.H.1
Biou, V.2
Shu, F.3
-
45
-
-
0037791613
-
Evolutionary connection between the catalytic subunits of DNA-dependent RNA polymerases and eukaryotic RNA-dependent RNA polymerases and the origin of RNA polymerases
-
Iyer LM Koonin EV, Aravind L (2003) Evolutionary connection between the catalytic subunits of DNA-dependent RNA polymerases and eukaryotic RNA-dependent RNA polymerases and the origin of RNA polymerases. BMC Struct Biol 3:1.
-
(2003)
BMC Struct. Biol.
, vol.3
, pp. 1
-
-
Iyer, L.M.1
Koonin, E.V.2
Aravind, L.3
-
46
-
-
0030888405
-
Three-dimensional structure of staphylokinase a plasminogen activator with therapeutic potential
-
Rabijns A, De Bondt HL, De Ranter C (1997) Three-dimensional structure of staphylokinase a plasminogen activator with therapeutic potential. Nat Struct Biol 4:357-360.
-
(1997)
Nat. Struct. Biol.
, vol.4
, pp. 357-360
-
-
Rabijns, A.1
De Bondt, H.L.2
De Ranter, C.3
-
48
-
-
0035891318
-
Mechanism of ubiquitin activation revealed by the structure of a bacterial MoeB-MoaD complex
-
Lake MW, Wuebbens MM, Rajagopalan KV, Schindelin H (2001) Mechanism of ubiquitin activation revealed by the structure of a bacterial MoeB-MoaD complex. Nature 414:325-329.
-
(2001)
Nature
, vol.414
, pp. 325-329
-
-
Lake, M.W.1
Wuebbens, M.M.2
Rajagopalan, K.V.3
Schindelin, H.4
-
49
-
-
0035902526
-
Biosynthesis of the thiazole moiety of thiamin in Escherichia coli: Identifi cation of an acyldisulfi de-linked protein-protein conjugate that is functionally analogous to the ubiquitin/E1 complex
-
Xi J, Ge Y, Kinsland C, et al (2001) Biosynthesis of the thiazole moiety of thiamin in Escherichia coli: Identifi cation of an acyldisulfi de-linked protein-protein conjugate that is functionally analogous to the ubiquitin/E1 complex. Proc Natl Acad Sci USA 98: 8513-8518.
-
(2001)
Proc. Natl. Acad. Sci. USA.
, vol.98
, pp. 8513-8518
-
-
Xi, J.1
Ge, Y.2
Kinsland, C.3
-
51
-
-
30144434909
-
Structure of the Escherichia coli ThiS-ThiF complex a key component of the sulfur transfer system in thiamin biosynthesis
-
Lehmann C, Begley TP, Ealick SE (2006) Structure of the Escherichia coli ThiS-ThiF complex a key component of the sulfur transfer system in thiamin biosynthesis. Biochemistry 45:11-19.
-
(2006)
Biochemistry
, vol.45
, pp. 11-19
-
-
Lehmann, C.1
Begley, T.P.2
Ealick, S.E.3
-
52
-
-
0035167185
-
Crystal structure of molybdopterin synthase and its evolutionary relationship to ubiquitin activation
-
Rudolph MJ, Wuebbens MM, Rajagopalan KV, Schindelin H (2001) Crystal structure of molybdopterin synthase and its evolutionary relationship to ubiquitin activation. Nat Struct Biol 8:42-46.
-
(2001)
Nat. Struct. Biol.
, vol.8
, pp. 42-46
-
-
Rudolph, M.J.1
Wuebbens, M.M.2
Rajagopalan, K.V.3
Schindelin, H.4
-
53
-
-
57449121400
-
A functional proteomics approach links the ubiquitin-related modifi er Urm1 to at RNA modifi cation pathway
-
Schlieker CD, Van der Veen AG, Damon JR, et al (2008) A functional proteomics approach links the ubiquitin-related modifi er Urm1 to a tRNA modifi cation pathway. Proc Natl Acad Sci U S A 105:18255-18260 .
-
(2008)
Proc. Natl. Acad. Sci. U S A.
, vol.105
, pp. 18255-18260
-
-
Schlieker, C.D.1
Van Der Veen, A.G.2
Damon, J.R.3
-
54
-
-
62549117409
-
Mechanistic characterization of the sulfur-relay system for eukaryotic 2-thiouridine biogenesis at tRNA wobble positions
-
Noma A, Sakaguchi Y, Suzuki T (2009) Mechanistic characterization of the sulfur-relay system for eukaryotic 2-thiouridine biogenesis at tRNA wobble positions. Nucleic Acids Res 37:1335-1352 .
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 1335-1352
-
-
Noma, A.1
Sakaguchi, Y.2
Suzuki, T.3
-
55
-
-
55549137731
-
Thiomodifi cation of yeast cytosolic tRNA requires a ubiquitin-related system that resembles bacterial sulfur transfer systems
-
Nakai Y, Nakai M, Hayashi H (2008) Thiomodifi cation of yeast cytosolic tRNA requires a ubiquitin-related system that resembles bacterial sulfur transfer systems. J Biol Chem 283:27469-27476 .
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 27469-27476
-
-
Nakai, Y.1
Nakai, M.2
Hayashi, H.3
-
56
-
-
62249160690
-
Ubiquitin-related modifi er Urm1 acts as a sulphur carrier in thiolation of eukaryotic transfer RNA
-
Leidel S, Pedrioli PG, Bucher T, et al (2009) Ubiquitin-related modifi er Urm1 acts as a sulphur carrier in thiolation of eukaryotic transfer RNA. Nature 458:228-232 .
-
(2009)
Nature
, vol.458
, pp. 228-232
-
-
Leidel, S.1
Pedrioli, P.G.2
Bucher, T.3
-
57
-
-
66149175454
-
Natural history of the E1-like superfamily: Implication for adenylation sulfur transfer and ubiquitin conjugation
-
Burroughs AM, Iyer LM, Aravind L (2009) Natural history of the E1-like superfamily: Implication for adenylation sulfur transfer and ubiquitin conjugation. Proteins 75:895-910 .
-
(2009)
Proteins
, vol.75
, pp. 895-910
-
-
Burroughs, A.M.1
Iyer, L.M.2
Aravind, L.3
-
58
-
-
79952142375
-
Role of the ubiquitin-like protein Urm1 as a noncanonical lysine-directed protein modifi er
-
Van der Veen AG, Schorpp K, Schlieker C, et al (2011) Role of the ubiquitin-like protein Urm1 as a noncanonical lysine-directed protein modifi er. Proc Natl Acad Sci U S A 108:1763-1770.
-
(2011)
Proc. Natl. Acad. Sci. U S A.
, vol.108
, pp. 1763-1770
-
-
Van Der Veen, A.G.1
Schorpp, K.2
Schlieker, C.3
-
59
-
-
0142216125
-
Attachment of the ubiquitin-related protein Urm1p to the antioxidant protein Ahp1p
-
Goehring AS, Rivers DM, Sprague GF Jr (2003) Attachment of the ubiquitin-related protein Urm1p to the antioxidant protein Ahp1p. Eukaryot Cell 2:930-936.
-
(2003)
Eukaryot Cell
, vol.2
, pp. 930-936
-
-
Goehring, A.S.1
Rivers, D.M.2
Sprague Jr., G.F.3
-
60
-
-
0344824569
-
Urmylation: A ubiquitin-like pathway that functions during invasive growth and budding in yeast
-
Goehring AS, Rivers DM, Sprague GF Jr (2003) Urmylation: A ubiquitin-like pathway that functions during invasive growth and budding in yeast. Mol Biol Cell 14:4329-4341.
-
(2003)
Mol. Biol. Cell
, vol.14
, pp. 4329-4341
-
-
Goehring, A.S.1
Rivers, D.M.2
Sprague Jr., G.F.3
-
61
-
-
73849149089
-
Ubiquitin-like small archaeal modifi er proteins (SAMPs) in Haloferax volcanii
-
Humbard MA, Miranda HV, Lim JM, et al (2010) Ubiquitin-like small archaeal modifi er proteins (SAMPs) in Haloferax volcanii. Nature 463:54-60.
-
(2010)
Nature
, vol.463
, pp. 54-60
-
-
Humbard, M.A.1
Miranda, H.V.2
Lim, J.M.3
-
62
-
-
57049162958
-
Urm1 at the crossroad of modifi cations. Protein modifi cations: Beyond the usual suspects review series
-
Pedrioli PG, Leidel S, Hofmann K (2008) Urm1 at the crossroad of modifi cations. 'Protein Modifi cations: Beyond the Usual Suspects' Review Series. EMBO Rep 9:1196-1202.
-
(2008)
EMBO Rep.
, vol.9
, pp. 1196-1202
-
-
Pedrioli, P.G.1
Leidel, S.2
Hofmann, K.3
-
63
-
-
33746803334
-
Solution structure of Urm1 and its implications for the origin of protein modifi ers
-
Xu J, Zhang J, Wang L, et al (2006) Solution structure of Urm1 and its implications for the origin of protein modifi ers. Proc Natl Acad Sci U S A 103:11625-11630.
-
(2006)
Proc. Natl. Acad. Sci. U S A.
, vol.103
, pp. 11625-11630
-
-
Xu, J.1
Zhang, J.2
Wang, L.3
-
64
-
-
79955598535
-
Insights into the evolution of Archaea and eukaryotic protein modifi er systems revealed by the genome of a novel archaeal group
-
Nunoura T, Takaki Y, Kakuta J, et al (2011) Insights into the evolution of Archaea and eukaryotic protein modifi er systems revealed by the genome of a novel archaeal group. Nucleic Acids Res 39:3204-3223.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 3204-3223
-
-
Nunoura, T.1
Takaki, Y.2
Kakuta, J.3
-
65
-
-
79959214387
-
Functional diversifi cation of the RING fi nger and other binuclear treble clef domains in prokaryotes and the early evolution of the ubiquitin system
-
Pubmed ID 21547297, doi: 10.1039/C1MB05061C
-
Burroughs AM, Iyer LM, Aravind L (2011) Functional diversifi cation of the RING fi nger and other binuclear treble clef domains in prokaryotes and the early evolution of the ubiquitin system. Molecular Biosystems 7(7):2261-2277. Pubmed ID: 21547297, doi: 10.1039/C1MB05061C
-
(2011)
Molecular Biosystems.
, vol.7
, Issue.7
, pp. 2261-2277
-
-
Burroughs, A.M.1
Iyer, L.M.2
Aravind, L.3
-
66
-
-
79953005868
-
Mycobacterial ubiquitin-like protein ligase PafA follows a two-step reaction pathway with a phosphorylated pup intermediate
-
Guth E, Thommen M, Weber-Ban E. (2011) Mycobacterial ubiquitin-like protein ligase PafA follows a two-step reaction pathway with a phosphorylated pup intermediate. J Biol Chem 286:4412-4419.
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 4412-4419
-
-
Guth, E.1
Thommen, M.2
Weber-Ban, E.3
-
67
-
-
77956162428
-
Molecular analysis of the prokaryotic ubiquitin-like protein (Pup) conjugation pathway in Mycobacterium tuberculosis
-
Cerda-Maira FA, Pearce MJ, Fuortes M, et al (2010) Molecular analysis of the prokaryotic ubiquitin-like protein (Pup) conjugation pathway in Mycobacterium tuberculosis. Mol Microbiol 77:1123-1135.
-
(2010)
Mol. Microbiol.
, vol.77
, pp. 1123-1135
-
-
Cerda-Maira, F.A.1
Pearce, M.J.2
Fuortes, M.3
-
68
-
-
77952559910
-
Prokaryotic ubiquitin-like protein (Pup) is coupled to substrates via the side chain of its C-terminal glutamate
-
Sutter M, Damberger FF, Imkamp F, et al (2010) Prokaryotic ubiquitin-like protein (Pup) is coupled to substrates via the side chain of its C-terminal glutamate. J Am Chem Soc 132:5610-5612.
-
(2010)
J. Am. Chem. Soc.
, vol.132
, pp. 5610-5612
-
-
Sutter, M.1
Damberger, F.F.2
Imkamp, F.3
-
69
-
-
75149113560
-
Deletion of dop in Mycobacterium smegmatis abolishes pupylation of protein substrates in vivo
-
Imkamp F, Rosenberger T, Striebel F, et al (2010) Deletion of dop in Mycobacterium smegmatis abolishes pupylation of protein substrates in vivo. Mol Microbiol 75:744-754.
-
(2010)
Mol. Microbiol.
, vol.75
, pp. 744-754
-
-
Imkamp, F.1
Rosenberger, T.2
Striebel, F.3
-
70
-
-
67349193285
-
Bacterial ubiquitin-like modifi er Pup is deamidated and conjugated to substrates by distinct but homologous enzymes
-
Striebel F, Imkamp F Sutter M, et al (2009) Bacterial ubiquitin-like modifi er Pup is deamidated and conjugated to substrates by distinct but homologous enzymes. Nat Struct Mol Biol 16:647-651.
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 647-651
-
-
Striebel, F.1
Imkamp, F.2
Sutter, M.3
-
71
-
-
56449118262
-
Ubiquitin-like protein involved in the proteasome pathway of Mycobacterium tuberculosis
-
Pearce MJ, Mintseris J, Ferreyra J, et al (2008) Ubiquitin-like protein involved in the proteasome pathway of Mycobacterium tuberculosis. Science 322:1104-1107.
-
(2008)
Science
, vol.322
, pp. 1104-1107
-
-
Pearce, M.J.1
Mintseris, J.2
Ferreyra, J.3
-
72
-
-
57149130818
-
Unraveling the biochemistry and provenance of pupylation: A prokaryotic analog of ubiquitination
-
Iyer LM, Burroughs AM, Aravind L (2008) Unraveling the biochemistry and provenance of pupylation: A prokaryotic analog of ubiquitination. Biol Direct 3:45.
-
(2008)
Biol. Direct.
, vol.3
, pp. 45
-
-
Iyer, L.M.1
Burroughs, A.M.2
Aravind, L.3
-
73
-
-
70149094758
-
Pup a prokaryotic ubiquitin-like protein is an intrinsically disordered protein
-
Liao S, Shang Q, Zhang X, et al (2009) Pup a prokaryotic ubiquitin-like protein is an intrinsically disordered protein. Biochem J 422: 207-215.
-
(2009)
Biochem. J.
, vol.422
, pp. 207-215
-
-
Liao, S.1
Shang, Q.2
Zhang, X.3
-
74
-
-
68949184714
-
Prokaryotic ubiquitin-like protein pup is intrinsically disordered
-
Chen X, Solomon WC, Kang Y, et al (2009) Prokaryotic ubiquitin-like protein pup is intrinsically disordered. J Mol Biol 392: 208-217.
-
(2009)
J. Mol. Biol.
, vol.392
, pp. 208-217
-
-
Chen, X.1
Solomon, W.C.2
Kang, Y.3
-
75
-
-
72949106699
-
Amidoligases with ATPgrasp glutamine synthetase-like and acetyltransferase- like domains: Synthesis of novel metabolites and peptide modifi cations of proteins
-
Iyer LM, Abhiman S, Maxwell Burroughs A, Aravind L (2009) Amidoligases with ATPgrasp glutamine synthetase-like and acetyltransferase- like domains: Synthesis of novel metabolites and peptide modifi cations of proteins. Mol Biosyst 5:1636-1660.
-
(2009)
Mol. Biosyst.
, vol.5
, pp. 1636-1660
-
-
Iyer, L.M.1
Abhiman, S.2
Maxwell Burroughs, A.3
Aravind, L.4
-
76
-
-
34548154812
-
Small but versatile: The extraordinary functional and structural diversity of the betagrasp fold
-
Burroughs AM, Balaji S, Iyer LM, Aravind L (2007) Small but versatile: The extraordinary functional and structural diversity of the betagrasp fold. Biol Direct 2:18.
-
(2007)
Biol. Direct.
, vol.2
, pp. 18
-
-
Burroughs, A.M.1
Balaji, S.2
Iyer, L.M.3
Aravind, L.4
-
77
-
-
33846548206
-
Basis for a ubiquitin-like protein thioester switch toggling E1-E2 affi nity
-
Huang DT, Hunt HW, Zhuang M, et al (2007) Basis for a ubiquitin-like protein thioester switch toggling E1-E2 affi nity. Nature 445:394-398.
-
(2007)
Nature
, vol.445
, pp. 394-398
-
-
Huang, D.T.1
Hunt, H.W.2
Zhuang, M.3
-
78
-
-
14844291338
-
Structures of the SUMO E1 provide mechanistic insights into SUMO activation and E2 recruitment to E1
-
Lois LM, Lima CD (2005) Structures of the SUMO E1 provide mechanistic insights into SUMO activation and E2 recruitment to E1. EMBO J 24:439-451.
-
(2005)
EMBO J.
, vol.24
, pp. 439-451
-
-
Lois, L.M.1
Lima, C.D.2
-
79
-
-
0031016108
-
BofC encodes a putative forespore regulator of the Bacillus subtilis sigma K checkpoint
-
Gomez M, Cutting SM (1997) BofC encodes a putative forespore regulator of the Bacillus subtilis sigma K checkpoint. Microbiology 143:157-170.
-
(1997)
Microbiology
, vol.143
, pp. 157-170
-
-
Gomez, M.1
Cutting, S.M.2
-
80
-
-
0033937403
-
BofC negatively regulates SpoIVB-mediated signaling in the Bacillus subtilis sigmaK-checkpoint
-
Wakeley P, Hoa NT, Cutting S (2000) BofC negatively regulates SpoIVB-mediated signaling in the Bacillus subtilis sigmaK-checkpoint. Mol Microbiol 36:1415-1424.
-
(2000)
Mol. Microbiol.
, vol.36
, pp. 1415-1424
-
-
Wakeley, P.1
Hoa, N.T.2
Cutting, S.3
-
81
-
-
0029835350
-
The MutT proteins or Nudix hydrolases a family of versatile widely distributed housecleaning enzymes
-
Bessman MJ, Frick DN, O'Handley SF (1996) The MutT proteins or "Nudix" hydrolases a family of versatile widely distributed "housecleaning" enzymes. J Biol Chem 271:25059-25062.
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 25059-25062
-
-
Bessman, M.J.1
Frick, D.N.2
O'Handley, S.F.3
-
82
-
-
0027522193
-
A highly conserved sequence motif defi ning the family of MutTrelated proteins from eubacteria eukaryotes and viruses
-
Koonin EV (1993) A highly conserved sequence motif defi ning the family of MutTrelated proteins from eubacteria eukaryotes and viruses. Nucleic Acids Res 21:4847.
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 4847
-
-
Koonin, E.V.1
-
83
-
-
0037317272
-
Novel fold revealed by the structure of a FAS1 domain pair from the insect cell adhesion molecule fasciclin I
-
Clout NJ, Tisi D, Hohenester E (2003) Novel fold revealed by the structure of a FAS1 domain pair from the insect cell adhesion molecule fasciclin I. Structure 11:197-203.
-
(2003)
Structure.
, vol.11
, pp. 197-203
-
-
Clout, N.J.1
Tisi, D.2
Hohenester, E.3
-
84
-
-
0032476667
-
The NMR structure of Escherichia coli ribosomal protein L25 shows homology to general stress proteins and glutaminyltRNA synthetases
-
Stoldt M. Wohnert J. Gorlach M Brown L.R. (1998) The NMR structure of Escherichia coli ribosomal protein L25 shows homology to general stress proteins and glutaminyltRNA synthetases. EMBO J 17:6377-6384.
-
(1998)
EMBO J.
, vol.17
, pp. 6377-6384
-
-
Stoldt, M.1
Wohnert, J.2
Gorlach M Brown, L.R.3
-
85
-
-
23044447870
-
Crystal structure of Methanobacterium thermoautotrophicum phosphoribosyl-AMP cyclohydrolase HisI
-
Sivaraman J, Myers RS, Boju L, et al (2005) Crystal structure of Methanobacterium thermoautotrophicum phosphoribosyl-AMP cyclohydrolase HisI. Biochemistry 44:10071-10080.
-
(2005)
Biochemistry
, vol.44
, pp. 10071-10080
-
-
Sivaraman, J.1
Myers, R.S.2
Boju, L.3
-
86
-
-
24744462313
-
Crystal structure of a novel FAD- FMNand ATP-containing L-proline dehydrogenase complex from Pyrococcus horikoshii
-
Tsuge H, Kawakami R, Sakuraba H, et al (2005) Crystal structure of a novel FAD- FMNand ATP-containing L-proline dehydrogenase complex from Pyrococcus horikoshii. J Biol Chem 280:31045-31049.
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 31045-31049
-
-
Tsuge, H.1
Kawakami, R.2
Sakuraba, H.3
-
87
-
-
0028961901
-
Structure of a hyperthermophilic tungstopterin enzyme aldehyde ferredoxin oxidoreductase
-
Chan MK, Mukund S, Kletzin A, et al (1995) Structure of a hyperthermophilic tungstopterin enzyme aldehyde ferredoxin oxidoreductase. Science 267:1463-1469.
-
(1995)
Science
, vol.267
, pp. 1463-1469
-
-
Chan, M.K.1
Mukund, S.2
Kletzin, A.3
-
89
-
-
33845931634
-
X-ray structure of a hydroxylaseregulatory protein complex from a hydrocarbon- oxidizing multicomponent monooxygenase Pseudomonas sp. OX1 phenol hydroxylase
-
Sazinsky MH, Dunten PW, McCormick M.S. et al (2006) X-ray structure of a hydroxylaseregulatory protein complex from a hydrocarbon- oxidizing multicomponent monooxygenase Pseudomonas sp. OX1 phenol hydroxylase. Biochemistry 45:15392-15404.
-
(2006)
Biochemistry
, vol.45
, pp. 15392-15404
-
-
Sazinsky, M.H.1
Dunten, P.W.2
McCormick, M.S.3
-
90
-
-
0035800409
-
Dioxygen Activation and Methane Hydroxylation by Soluble Methane Monooxygenase: A Tale of Two Irons and Three Proteins A list of abbreviations can be found in Section 7
-
Merkx M, Kopp DA, Sazinsky MH, et al (2001) Dioxygen Activation and Methane Hydroxylation by Soluble Methane Monooxygenase: A Tale of Two Irons and Three Proteins A list of abbreviations can be found in Section 7. Angew Chem Int Ed Engl 40:2782-2807.
-
(2001)
Angew Chem. Int. Ed. Engl.
, vol.40
, pp. 2782-2807
-
-
Merkx, M.1
Kopp, D.A.2
Sazinsky, M.H.3
-
91
-
-
34147162110
-
Biosynthesis of the thioquinolobactin siderophore: An interesting variation on sulfur transfer
-
Godert AM, Jin M, McLafferty FW, Begley TP (2007) Biosynthesis of the thioquinolobactin siderophore: An interesting variation on sulfur transfer. J Bacteriol 189:2941-2944.
-
(2007)
J. Bacteriol.
, vol.189
, pp. 2941-2944
-
-
Godert, A.M.1
Jin, M.2
McLafferty, F.W.3
Begley, T.P.4
-
93
-
-
0027480074
-
Identifi cation of molybdopterin as the organic component of the tungsten cofactor in four enzymes from hyperthermophilic Archaea
-
Johnson J.L. Rajagopalan K.V. Mukund S Adams M.W. (1993) Identifi cation of molybdopterin as the organic component of the tungsten cofactor in four enzymes from hyperthermophilic Archaea. J Biol Chem 268 4848-4852.
-
(1993)
J. Biol. Chem.
, vol.268
, pp. 4848-4852
-
-
Johnson, J.L.1
Rajagopalan, K.V.2
Mukund S Adams, M.W.3
-
94
-
-
32444437179
-
The genome of the novel phage Rtp with a rosette-like tail tip is homologous to the genome of phage T1
-
Wietzorrek A, Schwarz H, Herrmann C, Braun V (2006) The genome of the novel phage Rtp with a rosette-like tail tip is homologous to the genome of phage T1. J Bacteriol 188:1419-1436.
-
(2006)
J. Bacteriol.
, vol.188
, pp. 1419-1436
-
-
Wietzorrek, A.1
Schwarz, H.2
Herrmann, C.3
Braun, V.4
-
95
-
-
21244491211
-
Crystal structure of the ubiquitin-like protein YukD from Bacillus subtilis
-
van den Ent F, Lowe J. (2005) Crystal structure of the ubiquitin-like protein YukD from Bacillus subtilis. FEBS Lett 579:3837-3841.
-
(2005)
FEBS Lett.
, vol.579
, pp. 3837-3841
-
-
Van Den Ent, F.1
Lowe, J.2
-
96
-
-
10044293087
-
Bacillus subtilis operon encoding a membrane receptor for bacteriophage SPP1
-
Sao-Jose C, Baptista C, Santos MA (2004) Bacillus subtilis operon encoding a membrane receptor for bacteriophage SPP1. J Bacteriol 186,8337-8346.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 8337-8346
-
-
Sao-Jose, C.1
Baptista, C.2
Santos, M.A.3
-
98
-
-
5144223072
-
Comparative genomics of the FtsKHerA superfamily of pumping ATPases: Implications for the origins of chromosome segregation cell division and viral capsid packaging
-
Iyer LM, Makarova KS, Koonin EV, Aravind L (2004) Comparative genomics of the FtsKHerA superfamily of pumping ATPases: Implications for the origins of chromosome segregation cell division and viral capsid packaging. Nucleic Acids Res 32:5260-5279.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 5260-5279
-
-
Iyer, L.M.1
Makarova, K.S.2
Koonin, E.V.3
Aravind, L.4
-
99
-
-
0036568776
-
The ESAT-6/WXG100 superfamily - And a new Gram-positive secretion system?
-
Pallen MJ (2002) The ESAT-6/WXG100 superfamily - and a new Gram-positive secretion system? Trends Microbiol 10:209-212.
-
(2002)
Trends Microbiol.
, vol.10
, pp. 209-212
-
-
Pallen, M.J.1
-
100
-
-
0030932134
-
A small ubiquitin-related polypeptide involved in targeting RanGAP1 to nuclear pore complex protein RanBP2
-
Mahajan R, Delphin C, Guan T, et al (1997) A small ubiquitin-related polypeptide involved in targeting RanGAP1 to nuclear pore complex protein RanBP2. Cell 88:97-107.
-
(1997)
Cell
, vol.88
, pp. 97-107
-
-
Mahajan, R.1
Delphin, C.2
Guan, T.3
-
101
-
-
0030455748
-
Rfaut novel ubiquitin-like modifi cation modulates the partitioning of the Ran-GTPase-activating protein RanGAP1 between the cytosol and the nuclear pore complex
-
Matunis MJ Coutavas E, Blobel G (1996) A novel ubiquitin-like modifi cation modulates the partitioning of the Ran-GTPase-activating protein RanGAP1 between the cytosol and the nuclear pore complex. J Cell Biol 135: 1457-1470.
-
(1996)
J. Cell Biol.
, vol.135
, pp. 1457-1470
-
-
Matunis, M.J.1
Coutavas, E.2
Blobel, G.3
-
102
-
-
2942610866
-
Domain analysis of the tubulin cofactor system: A model for tubulin folding and dimerization
-
Grynberg M, Jaroszewski L, Godzik A (2003) Domain analysis of the tubulin cofactor system: A model for tubulin folding and dimerization. BMC Bioinformatics 4:46.
-
(2003)
BMC Bioinformatics.
, vol.4
, pp. 46
-
-
Grynberg, M.1
Jaroszewski, L.2
Godzik, A.3
-
103
-
-
0033581886
-
Structural insights into phosphoinositide 3-kinase catalysis and signalling
-
Walker EH, Perisic O, Ried C, et al (1999) Structural insights into phosphoinositide 3-kinase catalysis and signalling. Nature 402: 313-320.
-
(1999)
Nature
, vol.402
, pp. 313-320
-
-
Walker, E.H.1
Perisic, O.2
Ried, C.3
-
104
-
-
0033046425
-
Novel predicted RNA-binding domains associated with the translation machinery
-
Aravind L, Koonin EV (1999) Novel predicted RNA-binding domains associated with the translation machinery. J Mol Evol 48:291-302.
-
(1999)
J. Mol. Evol.
, vol.48
, pp. 291-302
-
-
Aravind, L.1
Koonin, E.V.2
-
105
-
-
32044441848
-
DWNN a novel ubiquitin-like domain implicates RBBP6 in mRNA processing and ubiquitinlike pathways
-
Pugh DJ, Ab E, Faro A, et al (2006) DWNN a novel ubiquitin-like domain implicates RBBP6 in mRNA processing and ubiquitinlike pathways. BMC Struct Biol 6:1.
-
(2006)
BMC Struct. Biol.
, vol.6
, pp. 1
-
-
Pugh, D.J.1
Ab, E.2
Faro, A.3
-
106
-
-
0027292249
-
The Saccharomyces cerevisiae PRP21 gene product is an integral component of the prespliceosome
-
Arenas JE, Abelson JN (1993) The Saccharomyces cerevisiae PRP21 gene product is an integral component of the prespliceosome. Proc Natl Acad Sci U S A 90:6771-6775.
-
(1993)
Proc. Natl. Acad. Sci. U S A.
, vol.90
, pp. 6771-6775
-
-
Arenas, J.E.1
Abelson, J.N.2
-
107
-
-
33646349748
-
Traffi cking in persulfi des: Delivering sulfur in biosynthetic pathways
-
Mueller EG (2006) Traffi cking in persulfi des: Delivering sulfur in biosynthetic pathways. Nat Chem Biol 2:185-194.
-
(2006)
Nat. Chem. Biol.
, vol.2
, pp. 185-194
-
-
Mueller, E.G.1
-
108
-
-
11144357935
-
The Pseudomonas siderophore quinolobactin is synthesized from xanthurenic acid an intermediate of the kynurenine pathway
-
Matthijs S, Baysse C, Koedam N, et al (2004) The Pseudomonas siderophore quinolobactin is synthesized from xanthurenic acid an intermediate of the kynurenine pathway. Mol Microbiol 52:371-384.
-
(2004)
Mol. Microbiol.
, vol.52
, pp. 371-384
-
-
Matthijs, S.1
Baysse, C.2
Koedam, N.3
-
109
-
-
0025069863
-
The fi mD gene required for cell surface localization of Escherichia coli type 1 fi mbriae
-
Klemm P, Christiansen G (1990) The fi mD gene required for cell surface localization of Escherichia coli type 1 fi mbriae. Mol Gen Genet 220:334-338.
-
(1990)
Mol. Gen Genet.
, vol.220
, pp. 334-338
-
-
Klemm, P.1
Christiansen, G.2
-
111
-
-
0032522714
-
Ramifi cations of kinetic partitioning on usher-mediated pilus biogenesis
-
Saulino ET, Thanassi DG, Pinkner JS, Hultgren SJ (1998) Ramifi cations of kinetic partitioning on usher-mediated pilus biogenesis. EMBO J 17:2177-2185.
-
(1998)
EMBO J.
, vol.17
, pp. 2177-2185
-
-
Saulino, E.T.1
Thanassi, D.G.2
Pinkner, J.S.3
Hultgren, S.J.4
-
112
-
-
0032549518
-
Crystal structure of microbial superantigen staphylococcal enterotoxin B at 1.5 A resolution: Implications for superantigen recognition by MHC class II molecules and T-cell receptors
-
Papageorgiou AC, Tranter HS, Acharya KR (1998) Crystal structure of microbial superantigen staphylococcal enterotoxin B at 1.5 A resolution: Implications for superantigen recognition by MHC class II molecules and T-cell receptors. J Mol Biol 277:61-79.
-
(1998)
J. Mol. Biol.
, vol.277
, pp. 61-79
-
-
Papageorgiou, A.C.1
Tranter, H.S.2
Acharya, K.R.3
-
113
-
-
0028080176
-
The third IgGbinding domain from streptococcal protein G. An analysis by X-ray crystallography of the structure alone and in a complex with Fab
-
Derrick JP, Wigley DB (1994) The third IgGbinding domain from streptococcal protein G. An analysis by X-ray crystallography of the structure alone and in a complex with Fab. J Mol Biol 243:906-918.
-
(1994)
J. Mol. Biol.
, vol.243
, pp. 906-918
-
-
Derrick, J.P.1
Wigley, D.B.2
-
114
-
-
39449124112
-
The Sulfolobus solfataricus AAA protein Sso0909 a homologue of the eukaryotic ESCRT Vps4 ATPase
-
Hobel CF, Albers SV, Driessen AJ, Lupas AN (2008) The Sulfolobus solfataricus AAA protein Sso0909 a homologue of the eukaryotic ESCRT Vps4 ATPase. Biochem Soc Trans 36:94-98.
-
(2008)
Biochem. Soc Trans.
, vol.36
, pp. 94-98
-
-
Hobel, C.F.1
Albers, S.V.2
Driessen, A.J.3
Lupas, A.N.4
-
115
-
-
2342509638
-
Archaeal histones: Structures stability and DNA binding
-
Reeve JN, Bailey KA, Li WT, et al (2004) Archaeal histones: Structures stability and DNA binding. Biochem Soc Trans 32:227-230.
-
(2004)
Biochem. Soc Trans.
, vol.32
, pp. 227-230
-
-
Reeve, J.N.1
Bailey, K.A.2
Li, W.T.3
-
117
-
-
0032518303
-
Overexpression in Escherichia coli of the rnf genes from Rhodobacter capsulatus- characterization of two membrane-bound ironsulfur proteins
-
Jouanneau Y, Jeong HS, Hugo N, et al (1998) Overexpression in Escherichia coli of the rnf genes from Rhodobacter capsulatus- characterization of two membrane-bound ironsulfur proteins. Eur J Biochem 251:54-64.
-
(1998)
Eur. J. Biochem.
, vol.251
, pp. 54-64
-
-
Jouanneau, Y.1
Jeong, H.S.2
Hugo, N.3
-
118
-
-
0035342462
-
Adaptations of the helix-grip fold for ligand binding and catalysis in the START domain superfamily
-
Iyer LM, Koonin EV, Aravind L (2001) Adaptations of the helix-grip fold for ligand binding and catalysis in the START domain superfamily. Proteins 43:134-144.
-
(2001)
Proteins
, vol.43
, pp. 134-144
-
-
Iyer, L.M.1
Koonin, E.V.2
Aravind, L.3
-
119
-
-
0034046020
-
The SsrA-SmpB system for protein tagging directed degradation and ribosome rescue
-
Karzai AW, Roche ED, Sauer RT (2000) The SsrA-SmpB system for protein tagging directed degradation and ribosome rescue. Nat Struct Biol 7:449-455.
-
(2000)
Nat. Struct. Biol.
, vol.7
, pp. 449-455
-
-
Karzai, A.W.1
Roche, E.D.2
Sauer, R.T.3
-
120
-
-
32544432878
-
ClpS is an essential component of the N-end rule pathway in Escherichia coli
-
Erbse A, Schmidt R, Bornemann T (2006) ClpS is an essential component of the N-end rule pathway in Escherichia coli. Nature 439:753-756.
-
(2006)
Nature
, vol.439
, pp. 753-756
-
-
Erbse, A.1
Schmidt, R.2
Bornemann, T.3
-
121
-
-
0037287864
-
Bioinformatic analysis of ClpS a protein module involved in prokaryotic and eukaryotic protein degradation
-
Lupas AN, Koretke KK (2003) Bioinformatic analysis of ClpS a protein module involved in prokaryotic and eukaryotic protein degradation. J Struct Biol 141:77-83.
-
(2003)
J. Struct Biol.
, vol.141
, pp. 77-83
-
-
Lupas, A.N.1
Koretke, K.K.2
-
122
-
-
0023067286
-
The origin of eukaryotic and archaebacterial cells
-
Cavalier-Smith T (1987) The origin of eukaryotic and archaebacterial cells. Ann N-Rfpy1 Acad Sci 503:17-54.
-
(1987)
Ann. N. Acad. Sci.
, vol.503
, pp. 17-54
-
-
Cavalier-Smith, T.1
-
124
-
-
0026277471
-
Comparative biochemistry of Archaea and Bacteria
-
Zillig W (1991) Comparative biochemistry of Archaea and Bacteria. Curr Opin Genet Dev 1:544-551.
-
(1991)
Curr. Opin. Genet. Dev.
, vol.1
, pp. 544-551
-
-
Zillig, W.1
-
125
-
-
9644255751
-
The AAA ATPase p97/VCP interacts with its alternative co-factors Ufd1-Npl4 and p47 through a common bipartite binding mechanism
-
Bruderer RM, Brasseur C, Meyer HH (2004) The AAA ATPase p97/VCP interacts with its alternative co-factors Ufd1-Npl4 and p47 through a common bipartite binding mechanism. J Biol Chem 279:49609-49616.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 49609-49616
-
-
Bruderer, R.M.1
Brasseur, C.2
Meyer, H.H.3
-
126
-
-
33747838835
-
SUMOsp: A web server for sumoylation site prediction
-
Xue Y, Zhou F, Fu C, et al (2006) SUMOsp: A web server for sumoylation site prediction. Nucleic Acids Res 34:W254-W257.
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Xue, Y.1
Zhou, F.2
Fu, C.3
-
127
-
-
0041706156
-
Rfaut proteomics approach to understanding protein ubiquitination
-
Peng J, Schwartz D, Elias JE, et al (2003) A proteomics approach to understanding protein ubiquitination. Nat Biotechnol 21:921-926.
-
(2003)
Nat. Biotechnol.
, vol.21
, pp. 921-926
-
-
Peng, J.1
Schwartz, D.2
Elias, J.E.3
-
129
-
-
0031888955
-
A caspase-activated DNase that degrades DNA during apoptosis and its inhibitor ICAD
-
Enari M, Sakahira H, Yokoyama H, et al (1998) A caspase-activated DNase that degrades DNA during apoptosis and its inhibitor ICAD. Nature 391:43-50.
-
(1998)
Nature
, vol.391
, pp. 43-50
-
-
Enari, M.1
Sakahira, H.2
Yokoyama, H.3
-
130
-
-
0032560073
-
CPAN a human nuclease regulated by the caspase-sensitive inhibitor DFF45
-
Halenbeck R, MacDonald H, Roulston A, et al (1998) CPAN a human nuclease regulated by the caspase-sensitive inhibitor DFF45. Curr Biol 8.537-540.
-
(1998)
Curr. Biol.
, vol.8
, pp. 537-540
-
-
Halenbeck, R.1
MacDonald, H.2
Roulston, A.3
-
131
-
-
0032555215
-
The 40-kDa subunit of DNA fragmentation factor induces DNA fragmentation and chromatin condensation during apoptosis
-
Liu X, Li P, Widlak P, et al (1998) The 40-kDa subunit of DNA fragmentation factor induces DNA fragmentation and chromatin condensation during apoptosis. Proc Natl Acad Sci U S A 95:8461-8466.
-
(1998)
Proc. Natl. Acad. Sci. U S A.
, vol.95
, pp. 8461-8466
-
-
Liu, X.1
Li, P.2
Widlak, P.3
-
132
-
-
0032482949
-
Molecular cloning and characterization of human caspase-activated DNase
-
Mukae N, Enari M, Sakahira H, et al (1998) Molecular cloning and characterization of human caspase-activated DNase. Proc Natl Acad Sci U S A 95:9123-9128.
-
(1998)
Proc. Natl. Acad. Sci. U S A.
, vol.95
, pp. 9123-9128
-
-
Mukae, N.1
Enari, M.2
Sakahira, H.3
-
133
-
-
35848954758
-
Comparative Genomics of Protists: New Insights on Evolution of Eukaryotic Signal Transduction and Gene Regulation
-
Anantharaman V, Iyer LM, Aravind L (2007) Comparative Genomics of Protists: New Insights on Evolution of Eukaryotic Signal Transduction and Gene Regulation. Annu Rev Microbiol 61:453-75.
-
(2007)
Annu. Rev. Microbiol.
, vol.61
, pp. 453-75
-
-
Anantharaman, V.1
Iyer, L.M.2
Aravind, L.3
-
134
-
-
0034536033
-
Insertion of cellular NEDD8 coding sequences in a pestivirus
-
Baroth M, Orlich M, Thiel HJ, Becher P (2000) Insertion of cellular NEDD8 coding sequences in a pestivirus. Virology 278:456-466.
-
(2000)
Virology
, vol.278
, pp. 456-466
-
-
Baroth, M.1
Orlich, M.2
Thiel, H.J.3
Becher, P.4
-
135
-
-
0027360808
-
Processing of poly-ubiquitin in the polyprotein of an RNA virus
-
Tautz N, Meyers G, Thiel HJ (1993) Processing of poly-ubiquitin in the polyprotein of an RNA virus. Virology 197:74-85.
-
(1993)
Virology
, vol.197
, pp. 74-85
-
-
Tautz, N.1
Meyers, G.2
Thiel, H.J.3
-
136
-
-
0033828623
-
Guilt by association: Contextual information in genome analysis
-
Aravind L (2000) Guilt by association: Contextual information in genome analysis. Genome Res 10:1074-1077.
-
(2000)
Genome Res.
, vol.10
, pp. 1074-1077
-
-
Aravind, L.1
-
137
-
-
0035853296
-
Regulatory potential phyletic distribution and evolution of ancient intracellular smallmolecule- binding domains
-
Anantharaman V, Koonin EV, Aravind L (2001) Regulatory potential phyletic distribution and evolution of ancient intracellular smallmolecule- binding domains. J Mol Biol 307: 1271-1292.
-
(2001)
J. Mol. Biol.
, vol.307
, pp. 1271-1292
-
-
Anantharaman, V.1
Koonin, E.V.2
Aravind, L.3
-
138
-
-
33846528971
-
Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis
-
Carlton JM, Hirt RP, Silva JC, et al (2007) Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis. Science 315:207-212.
-
(2007)
Science
, vol.315
, pp. 207-212
-
-
Carlton, J.M.1
Hirt, R.P.2
Silva, J.C.3
-
139
-
-
0035658442
-
HRD4/NPL4 is required for the proteasomal processing of ubiquitinated ER proteins
-
Bays NW, Wilhovsky SK, Goradia A, et al (2001) HRD4/NPL4 is required for the proteasomal processing of ubiquitinated ER proteins. Mol Biol Cell 12:4114-4128.
-
(2001)
Mol. Biol. Cell
, vol.12
, pp. 4114-4128
-
-
Bays, N.W.1
Wilhovsky, S.K.2
Goradia, A.3
-
140
-
-
0022776515
-
Novel subunit-subunit interactions in the structure of glutamine synthetase
-
Almassy RJ, Janson CA, Hamlin R, et al (1986) Novel subunit-subunit interactions in the structure of glutamine synthetase. Nature 323:304-309.
-
(1986)
Nature
, vol.323
, pp. 304-309
-
-
Almassy, R.J.1
Janson, C.A.2
Hamlin, R.3
-
141
-
-
0033514092
-
N1-(5'-phosphoribosyl)adenosine-5'-monophosphate cyclohydrolase: Purifi cation and characterization of a unique metalloenzyme
-
D'Ordine RL, Klem TJ, Davisson VJ (1999) N1-(5'-phosphoribosyl)adenosine- 5'-monophosphate cyclohydrolase: Purifi cation and characterization of a unique metalloenzyme. Biochemistry 38:1537-1546.
-
(1999)
Biochemistry
, vol.38
, pp. 1537-1546
-
-
D'Ordine, R.L.1
Klem, T.J.2
Davisson, V.J.3
-
142
-
-
0034613378
-
Identifi cation of motifs for cell adhesion within the repeated domains of transforming growth factor-beta-induced gene betaig-h3
-
Kim JE, Kim SJ, Lee BH, et al (2000) Identifi cation of motifs for cell adhesion within the repeated domains of transforming growth factor-beta-induced gene betaig-h3. J Biol Chem 275:30907-30915.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 30907-30915
-
-
Kim, J.E.1
Kim, S.J.2
Lee, B.H.3
-
143
-
-
0038687057
-
Vertebrate-type and plant-type ferredoxins: Crystal structure comparison and electron transfer pathway modelling
-
Muller JJ, Muller A, Rottmann M, et al (1999) Vertebrate-type and plant-type ferredoxins: Crystal structure comparison and electron transfer pathway modelling. J Mol Biol 294:501-513.
-
(1999)
J. Mol. Biol.
, vol.294
, pp. 501-513
-
-
Muller, J.J.1
Muller, A.2
Rottmann, M.3
-
144
-
-
0036153761
-
Crystal structures of the active and alloxanthine-inhibited forms of xanthine dehydrogenase from Rhodobacter capsulatus
-
Truglio JJ, Theis K, Leimkuhler S, et al (2002) Crystal structures of the active and alloxanthine-inhibited forms of xanthine dehydrogenase from Rhodobacter capsulatus. Structure 10:115-125.
-
(2002)
Structure.
, vol.10
, pp. 115-125
-
-
Truglio, J.J.1
Theis, K.2
Leimkuhler, S.3
-
145
-
-
0348150715
-
Architecture of succinate dehydrogenase and reactive oxygen species generation
-
Yankovskaya V, Horsefi eld R, Tornroth S, et al (2003) Architecture of succinate dehydrogenase and reactive oxygen species generation. Science 299:700-704.
-
(2003)
Science
, vol.299
, pp. 700-704
-
-
Yankovskaya, V.1
Horsefield, R.2
Tornroth, S.3
-
147
-
-
0033574737
-
Structure of the VHL-ElonginCElonginB complex: Implications for VHL tumor suppressor function
-
Stebbins CE, Kaelin WG Jr, Pavletich NP (1999) Structure of the VHL-ElonginCElonginB complex: Implications for VHL tumor suppressor function. Science 284:455-461.
-
(1999)
Science
, vol.284
, pp. 455-461
-
-
Stebbins, C.E.1
Kaelin Jr., W.G.2
Pavletich, N.P.3
-
148
-
-
0030794729
-
The ubiquitin-like protein Smt3p is activated for conjugation to other proteins by an Aos1p/Uba2p heterodimer
-
Johnson ES, Schwienhorst I, Dohmen RJ, Blobel G (1997) The ubiquitin-like protein Smt3p is activated for conjugation to other proteins by an Aos1p/Uba2p heterodimer. EMBO J 16:5509-5519.
-
(1997)
EMBO J.
, vol.16
, pp. 5509-5519
-
-
Johnson, E.S.1
Schwienhorst, I.2
Dohmen, R.J.3
Blobel, G.4
-
149
-
-
0019877280
-
Stimulation of ATP-dependent proteolysis requires ubiquitin with the COOH-terminal sequence Arg-Gly-Gly
-
Wilkinson KD, and Audhya TK (1981) Stimulation of ATP-dependent proteolysis requires ubiquitin with the COOH-terminal sequence Arg-Gly-Gly. J Biol Chem 256:9235-9241.
-
(1981)
J. Biol. Chem.
, vol.256
, pp. 9235-9241
-
-
Wilkinson, K.D.1
Audhya, T.K.2
-
150
-
-
0034708503
-
Evidence that ThiI an enzyme shared between thiamin and 4-thiouridine biosynthesis may be a sulfurtransferase that proceeds through a persulfi de intermediate
-
Palenchar PM, Buck CJ, Cheng H, et al (2000) Evidence that ThiI an enzyme shared between thiamin and 4-thiouridine biosynthesis may be a sulfurtransferase that proceeds through a persulfi de intermediate. J Biol Chem 275:8283-8286.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 8283-8286
-
-
Palenchar, P.M.1
Buck, C.J.2
Cheng, H.3
-
151
-
-
41449111223
-
Maturation of an Escherichia coli ribosomal peptide antibiotic by ATPconsuming N-P bond formation in microcin C7
-
Roush RF, Nolan EM, Lohr F, Walsh CT (2008) Maturation of an Escherichia coli ribosomal peptide antibiotic by ATPconsuming N-P bond formation in microcin C7. J Am Chem Soc 130:3603-3609.
-
(2008)
J. Am. Chem. Soc.
, vol.130
, pp. 3603-3609
-
-
Roush, R.F.1
Nolan, E.M.2
Lohr, F.3
Walsh, C.T.4
-
152
-
-
29244470531
-
Cloning and characterization of the goadsporin biosynthetic gene cluster from Streptomyces sp. TP-A0584
-
Onaka H, Nakaho M, Hayashi K, et al (2005) Cloning and characterization of the goadsporin biosynthetic gene cluster from Streptomyces sp. TP-A0584. Microbiology 151:3923-3933.
-
(2005)
Microbiology
, vol.151
, pp. 3923-3933
-
-
Onaka, H.1
Nakaho, M.2
Hayashi, K.3
-
153
-
-
0028868830
-
Structure and organization of plasmid genes required to produce the translation inhibitor microcin C7
-
Gonzalez-Pastor JE, San Millan JL, Castilla MA, Moreno F (1995) Structure and organization of plasmid genes required to produce the translation inhibitor microcin C7. J Bacteriol 177:7131-7140.
-
(1995)
J. Bacteriol.
, vol.177
, pp. 7131-7140
-
-
Gonzalez-Pastor, J.E.1
San Millan, J.L.2
Castilla, M.A.3
Moreno, F.4
-
154
-
-
42649124278
-
Anatomy of the E2 ligase fold: Implications for enzymology and evolution of ubiquitin/Ub-like protein conjugation
-
Burroughs A.M. Jaffee M. Iyer L.M Aravind L. (2008) Anatomy of the E2 ligase fold: Implications for enzymology and evolution of ubiquitin/Ub-like protein conjugation. J Struct Biol 162 205-218.
-
(2008)
J. Struct Biol.
, vol.162
, pp. 205-218
-
-
Burroughs, A.M.1
Jaffee, M.2
Iyer, L.M.3
Aravind, L.4
-
155
-
-
34948848684
-
E2-BRCA1 RING interactions dictate synthesis of mono- or specifi c polyubiquitin chain linkages
-
Christensen DE, Brzovic PS, Klevit RE (2007) E2-BRCA1 RING interactions dictate synthesis of mono- or specifi c polyubiquitin chain linkages. Nat Struct Mol Biol 14:941-948.
-
(2007)
Nat. Struct. Mol. Biol.
, vol.14
, pp. 941-948
-
-
Christensen, D.E.1
Brzovic, P.S.2
Klevit, R.E.3
|