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Zhang, H.1
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0344057030
-
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note
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-1 in a buffer of 5 mM bis-tris-propane, and 200 mM NaCl, 2 mM dithiothreitol (DTT), pH 7.0.
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36
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A. Schoenfeld, E. J. Davidowitz, R. D. Burk, Proc. Natl. Acad. Sci. U. S. A. 95, 8817 (1998); O. Iliopoulos, M. Ohh, W. G. Kaelin Jr., ibid., p. 11661.
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A. Schoenfeld, E. J. Davidowitz, R. D. Burk, Proc. Natl. Acad. Sci. U. S. A. 95, 8817 (1998); O. Iliopoulos, M. Ohh, W. G. Kaelin Jr., ibid., p. 11661.
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Iliopoulos, O.1
M, O.2
Kaelin W.G., Jr.3
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38
-
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0344488215
-
-
note
-
2- and COOH-termini of VHL, respectively, residues 139 to 144 of VHL, residues 50 to 57 of ElonginC, and residues 80 to 87 of ElonginB. Outside these segments, there are no residues in the disallowed region of the Ramachandran plot, and more than 85% of the residues are in the most favored regions.
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-
-
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39
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0022080874
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S. Vijay-Kumar, C. E. Bugg, K. D. Wilkinson, W. J. Cook, Proc. Natl. Acad. Sci. U.S.A. 82, 3582 (1985).
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Vijay-Kumar, S.1
Bugg, C.E.2
Wilkinson, K.D.3
Cook, W.J.4
-
40
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-
0345350603
-
-
note
-
The three-helix cluster would appear unstable in the absence of ElonginC because it would have its hydrophobic core partially exposed. It is conceivable that monomeric VHL has a conformational change that transfers the amphipathic H4 helix from the β domain to the gap in the α domain, sequestering the exposed Hydrophobic residues.
-
-
-
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41
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0030813061
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Y. Takagi, A. Pause, R. C. Conaway, J. W. Conaway, J. Biol. Chem. 272, 27 444 (1997).
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Takagi, Y.1
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42
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0031865006
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L. Holm and C. Sander, Nucleic Acids Res. 26, 316 (1998); A. Kreusch, P. J. Pfaffinger, C. F. Stevens, S. Choe, Nature 392, 945 (1998). The 63 residues aligning with a rmsd of 1.7 Å are (ElonginC followed by the T1 domain): 17-24 with 66-73, 25-37 with 73-85, 40-44 with 90-94, 59-62 with 108-111, 63-80 with 111-128, and 98-112 with 137-151. The characteristic surface hydrophobicity of ElonginC is absent in the mostly polar molecular surface of the T1 domain. We found no evidence that the VCB complex forms multimers in solution.
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Nucleic Acids Res.
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-
-
Holm, L.1
Sander, C.2
-
43
-
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0032580205
-
-
The 63 residues aligning with a rmsd of 1.7 Å are (ElonginC followed by the T1 domain): 17-24 with 66-73, 25-37 with 73-85, 40-44 with 90-94, 59-62 with 108-111, 63-80 with 111-128, and 98-112 with 137-151. The characteristic surface hydrophobicity of ElonginC is absent in the mostly polar molecular surface of the T1 domain. We found no evidence that the VCB complex forms multimers in solution
-
L. Holm and C. Sander, Nucleic Acids Res. 26, 316 (1998); A. Kreusch, P. J. Pfaffinger, C. F. Stevens, S. Choe, Nature 392, 945 (1998). The 63 residues aligning with a rmsd of 1.7 Å are (ElonginC followed by the T1 domain): 17-24 with 66-73, 25-37 with 73-85, 40-44 with 90-94, 59-62 with 108-111, 63-80 with 111-128, and 98-112 with 137-151. The characteristic surface hydrophobicity of ElonginC is absent in the mostly polar molecular surface of the T1 domain. We found no evidence that the VCB complex forms multimers in solution.
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(1998)
Nature
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-
Kreusch, A.1
Pfaffinger, P.J.2
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Choe, S.4
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45
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0029107760
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N. Nassar et al., Nature 375, 554 (1995).
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Nature
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Nassar, N.1
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46
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0031778630
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Huang, L.1
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48
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0032085240
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M. Ohh et al., Mol. Cell 1, 959 (1998).
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Mol. Cell
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Ohh, M.1
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51
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0344057024
-
-
note
-
We performed sequence threading analysis using the program THREADER2 (32) with equal weights for threading and sequence alignment, and it was performed against a library of 1925 folds augmented with the folds of the VHL α and β domains and of ElonginC. The sequences of Skp1 (1 to 112), the SOCS-1 SOCS box (170 to 211), and the Skp2 F box (107 to 147) yielded Z scores of 3.7 (ElonginC structure ranked first), 2.5 (VHL a domain ranked first), and 1.6 (VHL α domain ranked third), respectively. In threading analyses of additional F-box sequences we also used a randomization test based on sequence shuffling (32). The best alignment was obtained with the CyclinF F box, which ranked the VHL a domain first with a score of 1.6. Most F boxes produced consistent alignments with the VHL α domain, with the exception that some lacked the one-residue insertion between the H2 and H3 helices (Fig. 5A). In the threading analysis of ElonginA, the VHL a domain structure ranked 704th, suggesting that the ElonginC-binding domain of ElonginA would be divergent. ElonginA sequences encompassing both the region of homology with the VHL H1 helix and the proposed F-box sequences (residues 545 to 610) were threaded as above.
-
-
-
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52
-
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0345350600
-
-
note
-
To test for cross-reactivity between the ElonginC and Skpl components, we coexpressed ElonginB, Skp1, and GST-VHL, isolated the GST-VHL with glutathione beads, and found no Skp1 copurifying with GST-VHL; this suggested that VHL has no affinity for Skp1. Conversely, we coexpressed ElonginB, ElonginC, and GST-Skp2 and found that a small amount of the ElonginC-ElonginB complex associated with CST-Skp2. Upon further purification, this complex did not persist like the VCB complex would, indicating that any ElonginC-Skp2 interaction would be very weak relative to the ElonginC-VHL or the Skp1-Skp2 interaction (C. E. Stebbins, W. G. Kaelin Jr., N. P. Pavletich, data not shown).
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-
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53
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0031831274
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E. E. Patton, A. R. Willems, M. Tyers, Trends Genet. 14, 236 (1998); E. E. Patton et al., Genes Dev. 12, 692 (1998).
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Patton, E.E.1
Willems, A.R.2
Tyers, M.3
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54
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0032031607
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E. E. Patton, A. R. Willems, M. Tyers, Trends Genet. 14, 236 (1998); E. E. Patton et al., Genes Dev. 12, 692 (1998).
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Patton, E.E.1
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56
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0028103275
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CCP4, Acta Crystalogr. D 50, 760 (1994).
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Acta Crystalogr. D
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57
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84889120137
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T. A. Jones, J.-Y. Zou, S. W. Cowan, M. Kjeldgaard, Acta Crystallogr. A 47, 110 (1991).
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Jones, T.A.1
Zou, J.-Y.2
Cowan, S.W.3
Kjeldgaard, M.4
-
59
-
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0344488212
-
-
note
-
Single-letter abbreviations for the amino acid residues are as follows: A, Ala; C, Cys; D, Asp; E, Glu; F, Phe; G, Gly; H, His; I, Ile; K, Lys; L, Leu; M, Met; N, Asn; P, Pro; Q, Gly; R, Arg; S, Ser; T, Thr; V, Val; W, Trp; and Y, Tyr.
-
-
-
-
61
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0344488209
-
-
note
-
2-terminal sequence and mass spectroscopic analyses, A. Batchelor for the pBB75 plasmid, M. Sullivan of the National Synchrotron Light Source X9 beam line and the staff of the Cornell High Energy Synchrotron Source MacChess for help with data collection, and C. Murray for administrative help. Coordinates have been deposited with the Brookhaven Protein Data Bank (accession code 1vcb).
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