-
1
-
-
0032918555
-
The RNA modification database: 1999 update
-
Rozenski,J., Crain,P.F. and McCloskey,J.A. (1999) The RNA modification database: 1999 update. Nucleic Acids Res., 27, 196-197.
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 196-197
-
-
Rozenski, J.1
Crain, P.F.2
McCloskey, J.A.3
-
2
-
-
0002495140
-
Biosynthesis and function of modified nucleosides
-
Söll,D. and RajBhandary,U.L, eds, ASM Press, Washington DC, pp
-
Bjork,G.R. (1995) Biosynthesis and function of modified nucleosides. In Söll,D. and RajBhandary,U.L. (eds), tRNA: Structure, Biosynthesis and Function., ASM Press, Washington DC, pp. 165-205.
-
(1995)
tRNA: Structure, Biosynthesis and Function
, pp. 165-205
-
-
Bjork, G.R.1
-
3
-
-
0002090634
-
Modified nucleosides in translation
-
Grosjean,H. and Benne,R, eds, ASM Press, Washington, DC, pp
-
Curran,J.F. (1998) Modified nucleosides in translation. In Grosjean,H. and Benne,R. (eds), Modification and Editing of RNA: The Alteration of RNA Structure and Function., ASM Press, Washington, DC, pp. 493-516.
-
(1998)
Modification and Editing of RNA: The Alteration of RNA Structure and Function
, pp. 493-516
-
-
Curran, J.F.1
-
4
-
-
19444374782
-
Biosynthesis and function of tRNA wobble modifications
-
Grosjean,H, ed, Springer, NY, pp
-
Suzuki,T. (2005) Biosynthesis and function of tRNA wobble modifications. In Grosjean,H. (ed), Fine-Tuning of RNA Functions by Modification and Editing, Springer, NY, pp. 24-69.
-
(2005)
Fine-Tuning of RNA Functions by Modification and Editing
, pp. 24-69
-
-
Suzuki, T.1
-
5
-
-
0000238430
-
Molecular mechanism of codon recognition by tRNA species with modified uridine in the first position of the anticodon
-
Yokoyama,S., Watanabe,T., Murao,K., Ishikura,H., Yamaizumi,Z., Nishimura,S. and Miyazawa,T. (1985) Molecular mechanism of codon recognition by tRNA species with modified uridine in the first position of the anticodon. Proc. Natl Acad. Sci. USA, 82, 4905-4909.
-
(1985)
Proc. Natl Acad. Sci. USA
, vol.82
, pp. 4905-4909
-
-
Yokoyama, S.1
Watanabe, T.2
Murao, K.3
Ishikura, H.4
Yamaizumi, Z.5
Nishimura, S.6
Miyazawa, T.7
-
6
-
-
0015868989
-
Biological function of 2-thiouridine in Escherichia coli glutamic acid transfer ribonucleic acid
-
Agris,P.F., Soll,D. and Seno,T. (1973) Biological function of 2-thiouridine in Escherichia coli glutamic acid transfer ribonucleic acid. Biochemistry, 12, 4331-4337.
-
(1973)
Biochemistry
, vol.12
, pp. 4331-4337
-
-
Agris, P.F.1
Soll, D.2
Seno, T.3
-
7
-
-
0344026255
-
Single atom modification (O←S) of tRNA confers ribosome binding
-
Ashraf,S.S., Sochacka,E., Cain,R., Guenther,R., Malkiewicz,A. and Agris,P.F. (1999) Single atom modification (O←S) of tRNA confers ribosome binding. RNA, 5, 188-194.
-
(1999)
RNA
, vol.5
, pp. 188-194
-
-
Ashraf, S.S.1
Sochacka, E.2
Cain, R.3
Guenther, R.4
Malkiewicz, A.5
Agris, P.F.6
-
8
-
-
0027273985
-
A 2-thiouridine derivative in tRNAGlu is a positive determinant for aminoacylation by Escherichia coli glutamyl-tRNA synthetase
-
Sylvers,L.A., Rogers,K.C., Shimizu,M., Ohtsuka,E. and Soll,D. (1993) A 2-thiouridine derivative in tRNAGlu is a positive determinant for aminoacylation by Escherichia coli glutamyl-tRNA synthetase. Biochemistry, 32, 3836-3841.
-
(1993)
Biochemistry
, vol.32
, pp. 3836-3841
-
-
Sylvers, L.A.1
Rogers, K.C.2
Shimizu, M.3
Ohtsuka, E.4
Soll, D.5
-
9
-
-
0033968067
-
Defect in modification at the anticodon wobble nucleotide of mitochondrial tRNA(Lys) with the MERRF encephalomyopathy pathogenic mutation
-
Yasukawa,T., Suzuki,T., Ishii,N., Ueda,T., Ohta,S. and Watanabe,K. (2000) Defect in modification at the anticodon wobble nucleotide of mitochondrial tRNA(Lys) with the MERRF encephalomyopathy pathogenic mutation. FEBS Lett., 467, 175-178.
-
(2000)
FEBS Lett
, vol.467
, pp. 175-178
-
-
Yasukawa, T.1
Suzuki, T.2
Ishii, N.3
Ueda, T.4
Ohta, S.5
Watanabe, K.6
-
10
-
-
0035801225
-
Wobble modification defect in tRNA disturbs codon-anticodon interaction in a mitochondrial disease
-
Yasukawa,T., Suzuki,T., Ishii,N., Ohta,S. and Watanabe,K. (2001) Wobble modification defect in tRNA disturbs codon-anticodon interaction in a mitochondrial disease. EMBO J., 20, 4794-4802.
-
(2001)
EMBO J
, vol.20
, pp. 4794-4802
-
-
Yasukawa, T.1
Suzuki, T.2
Ishii, N.3
Ohta, S.4
Watanabe, K.5
-
11
-
-
33646349748
-
Trafficking in persulfides: Delivering sulfur in biosynthetic pathways
-
Mueller,E.G. (2006) Trafficking in persulfides: Delivering sulfur in biosynthetic pathways. Nat. Chem. Biol., 2, 185-194.
-
(2006)
Nat. Chem. Biol
, vol.2
, pp. 185-194
-
-
Mueller, E.G.1
-
12
-
-
0035478708
-
Enzymology of carbon-sulfur bond formation
-
Marquet,A. (2001) Enzymology of carbon-sulfur bond formation. Curr. Opin. Chem. Biol., 5, 541-549.
-
(2001)
Curr. Opin. Chem. Biol
, vol.5
, pp. 541-549
-
-
Marquet, A.1
-
13
-
-
33646347650
-
Orchestrating sulfur incorporation into RNA
-
Lauhon,C.T. (2006) Orchestrating sulfur incorporation into RNA. Nat. Chem. Biol., 2, 182-183.
-
(2006)
Nat. Chem. Biol
, vol.2
, pp. 182-183
-
-
Lauhon, C.T.1
-
14
-
-
47249094614
-
Maturation of iron-sulfur proteins in eukaryotes: Mechanisms, connected processes, and diseases
-
Lill,R. and Muhlenhoff,U. (2008) Maturation of iron-sulfur proteins in eukaryotes: Mechanisms, connected processes, and diseases. Annu. Rev. Biochem., 77, 669-700.
-
(2008)
Annu. Rev. Biochem
, vol.77
, pp. 669-700
-
-
Lill, R.1
Muhlenhoff, U.2
-
15
-
-
0037397764
-
Formation of iron-sulfur clusters in bacteria: An emerging field in bioinorganic chemistry
-
Frazzon,J. and Dean,D.R. (2003) Formation of iron-sulfur clusters in bacteria: An emerging field in bioinorganic chemistry. Curr. Opin. Chem. Biol., 7, 166-173.
-
(2003)
Curr. Opin. Chem. Biol
, vol.7
, pp. 166-173
-
-
Frazzon, J.1
Dean, D.R.2
-
16
-
-
0036952614
-
Requirement for IscS in biosynthesis of all thionucleosides in Escherichia coli
-
Lauhon,C.T. (2002) Requirement for IscS in biosynthesis of all thionucleosides in Escherichia coli. J. Bacteriol., 184, 6820-6829.
-
(2002)
J. Bacteriol
, vol.184
, pp. 6820-6829
-
-
Lauhon, C.T.1
-
17
-
-
0036955843
-
The cysteine desulfurase IscS is required for synthesis of all five thiolated nucleosides present in tRNA from Salmonella enterica serovar typhimurium
-
Nilsson,K., Lundgren,H.K., Hagervall,T.G. and Bjork,G.R. (2002) The cysteine desulfurase IscS is required for synthesis of all five thiolated nucleosides present in tRNA from Salmonella enterica serovar typhimurium. J. Bacteriol., 184, 6830-6835.
-
(2002)
J. Bacteriol
, vol.184
, pp. 6830-6835
-
-
Nilsson, K.1
Lundgren, H.K.2
Hagervall, T.G.3
Bjork, G.R.4
-
18
-
-
29544452864
-
Mechanistic insights into sulfur relay by multiple sulfur mediators involved in thiouridine biosynthesis at tRNA wobble positions
-
Ikeuchi,Y., Shigi,N., Kato,J., Nishimura,A. and Suzuki,T. (2006) Mechanistic insights into sulfur relay by multiple sulfur mediators involved in thiouridine biosynthesis at tRNA wobble positions. Mol. Cell, 21, 97-108.
-
(2006)
Mol. Cell
, vol.21
, pp. 97-108
-
-
Ikeuchi, Y.1
Shigi, N.2
Kato, J.3
Nishimura, A.4
Suzuki, T.5
-
19
-
-
33747125139
-
Snapshots of tRNA sulphuration via an adenylated intermediate
-
Numata,T., Ikeuchi,Y., Fukai,S., Suzuki,T. and Nureki,O. (2006) Snapshots of tRNA sulphuration via an adenylated intermediate. Nature 442, 419-424.
-
(2006)
Nature
, vol.442
, pp. 419-424
-
-
Numata, T.1
Ikeuchi, Y.2
Fukai, S.3
Suzuki, T.4
Nureki, O.5
-
20
-
-
1842582668
-
Yeast Nfs1p is involved in thio-modification of both mitochondrial and cytoplasmic tRNAs
-
Nakai,Y., Umeda,N., Suzuki,T., Nakai,M., Hayashi,H., Watanabe,K. and Kagamiyama,H. (2004) Yeast Nfs1p is involved in thio-modification of both mitochondrial and cytoplasmic tRNAs. J. Biol. Chem., 279 12363-12368.
-
(2004)
J. Biol. Chem
, vol.279
, pp. 12363-12368
-
-
Nakai, Y.1
Umeda, N.2
Suzuki, T.3
Nakai, M.4
Hayashi, H.5
Watanabe, K.6
Kagamiyama, H.7
-
21
-
-
34147210386
-
Thio modification of yeast cytosolic tRNA is an iron-sulfur protein-dependent pathway
-
Nakai,Y., Nakai,M., Lill,R., Suzuki,T. and Hayashi,H. (2007) Thio modification of yeast cytosolic tRNA is an iron-sulfur protein-dependent pathway. Mol. Cell. Biol., 27, 2841-2847.
-
(2007)
Mol. Cell. Biol
, vol.27
, pp. 2841-2847
-
-
Nakai, Y.1
Nakai, M.2
Lill, R.3
Suzuki, T.4
Hayashi, H.5
-
22
-
-
12544259245
-
Mitochondria-specific RNA-modifying enzymes responsible for the biosynthesis of the wobble base in mitochondrial tRNAs. Implications for the molecular pathogenesis of human mitochondrial diseases
-
Umeda,N., Suzuki,T., Yukawa,M., Ohya,Y., Shindo,H., Watanabe,K. and Suzuki,T. (2005) Mitochondria-specific RNA-modifying enzymes responsible for the biosynthesis of the wobble base in mitochondrial tRNAs. Implications for the molecular pathogenesis of human mitochondrial diseases. J. Biol. Chem., 280, 1613-1624.
-
(2005)
J. Biol. Chem
, vol.280
, pp. 1613-1624
-
-
Umeda, N.1
Suzuki, T.2
Yukawa, M.3
Ohya, Y.4
Shindo, H.5
Watanabe, K.6
Suzuki, T.7
-
23
-
-
34447518814
-
A conserved modified wobble nucleoside (mcm5s2U) in lysyl-tRNA is required for viability in yeast
-
Bjork,G.R., Huang,B., Persson,O.P. and Bystrom,A.S. (2007) A conserved modified wobble nucleoside (mcm5s2U) in lysyl-tRNA is required for viability in yeast. RNA., 13, 1245-1255.
-
(2007)
RNA
, vol.13
, pp. 1245-1255
-
-
Bjork, G.R.1
Huang, B.2
Persson, O.P.3
Bystrom, A.S.4
-
24
-
-
44449147412
-
The conserved Wobble uridine tRNA thiolase Ctu1-Ctu2 is required to maintain genome integrity
-
Dewez,M., Bauer,F., Dieu,M., Raes,M., Vandenhaute,J. and Hermand,D. (2008) The conserved Wobble uridine tRNA thiolase Ctu1-Ctu2 is required to maintain genome integrity. Proc. Natl Acad. Sci. USA, 105 5459-5464.
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 5459-5464
-
-
Dewez, M.1
Bauer, F.2
Dieu, M.3
Raes, M.4
Vandenhaute, J.5
Hermand, D.6
-
25
-
-
33646778150
-
Biosynthesis of wybutosine, a hyper-modified nucleoside in eukaryotic phenylalanine tRNA
-
Noma,A., Kirino,Y., Ikeuchi,Y. and Suzuki,T. (2006) Biosynthesis of wybutosine, a hyper-modified nucleoside in eukaryotic phenylalanine tRNA. EMBO J., 25, 2142-2154.
-
(2006)
EMBO J
, vol.25
, pp. 2142-2154
-
-
Noma, A.1
Kirino, Y.2
Ikeuchi, Y.3
Suzuki, T.4
-
26
-
-
34548789633
-
Mass spectrometric identification and characterization of RNA-modifying enzymes
-
Suzuki,T., Ikeuchi,Y., Noma,A., Suzuki,T. and Sakaguchi,Y. (2007) Mass spectrometric identification and characterization of RNA-modifying enzymes. Methods Enzymol., 425, 211-229.
-
(2007)
Methods Enzymol
, vol.425
, pp. 211-229
-
-
Suzuki, T.1
Ikeuchi, Y.2
Noma, A.3
Suzuki, T.4
Sakaguchi, Y.5
-
27
-
-
10744229752
-
-
Soma,A., Ikeuchi,Y., Kanemasa,S., Kobayashi,K., Ogasawara,N., 27. Soma,A., Ikeuchi,Y., Kanemasa,S., Kobayashi,K., Ogasawara,N., Ote,T., Kato,J., Watanabe,K., Sekine,Y. and Suzuki,T. (2003) An RNA-modifying enzyme that governs both the codon and amino acid specificities of isoleucine tRNA. Mol. Cell, 12, 689-698.
-
Soma,A., Ikeuchi,Y., Kanemasa,S., Kobayashi,K., Ogasawara,N., 27. Soma,A., Ikeuchi,Y., Kanemasa,S., Kobayashi,K., Ogasawara,N., Ote,T., Kato,J., Watanabe,K., Sekine,Y. and Suzuki,T. (2003) An RNA-modifying enzyme that governs both the codon and amino acid specificities of isoleucine tRNA. Mol. Cell, 12, 689-698.
-
-
-
-
28
-
-
49949086040
-
The RNA acetyl-transferase driven by ATP hydrolysis synthesizes N4-acetylcytidine of tRNA anticodon
-
Ikeuchi,Y., Kitahara,K. and Suzuki,T. (2008) The RNA acetyl-transferase driven by ATP hydrolysis synthesizes N4-acetylcytidine of tRNA anticodon. EMBO J., 27, 2194-2203.
-
(2008)
EMBO J
, vol.27
, pp. 2194-2203
-
-
Ikeuchi, Y.1
Kitahara, K.2
Suzuki, T.3
-
29
-
-
2242453224
-
Characterization of iron-sulfur protein assembly in isolated mitochondria. A requirement for ATP, NADH, and reduced iron
-
Muhlenhoff,U., Richhardt,N., Gerber,J. and Lill,R. (2002) Characterization of iron-sulfur protein assembly in isolated mitochondria. A requirement for ATP, NADH, and reduced iron. J. Biol. Chem., 277, 29810-29816.
-
(2002)
J. Biol. Chem
, vol.277
, pp. 29810-29816
-
-
Muhlenhoff, U.1
Richhardt, N.2
Gerber, J.3
Lill, R.4
-
30
-
-
0037415690
-
Wobble modification differences and subcellular localization of tRNAs in Leishmania tarentolae: Implication for tRNA sorting mechanism
-
Kaneko,T., Suzuki,T., Kapushoc,S.T., Rubio,M.A., Ghazvini,J., Watanabe,K., Simpson,L. and Suzuki,T. (2003) Wobble modification differences and subcellular localization of tRNAs in Leishmania tarentolae: Implication for tRNA sorting mechanism. EMBO J., 22 657-667.
-
(2003)
EMBO J
, vol.22
, pp. 657-667
-
-
Kaneko, T.1
Suzuki, T.2
Kapushoc, S.T.3
Rubio, M.A.4
Ghazvini, J.5
Watanabe, K.6
Simpson, L.7
Suzuki, T.8
-
31
-
-
34548767727
-
Chaplet column chromatography: Isolation of a large set of individual RNAs in a single step
-
Suzuki,T. and Suzuki,T. (2007) Chaplet column chromatography: Isolation of a large set of individual RNAs in a single step. Methods Enzymol. 425, 231-239.
-
(2007)
Methods Enzymol
, vol.425
, pp. 231-239
-
-
Suzuki, T.1
Suzuki, T.2
-
32
-
-
34047143747
-
Automated parallel isolation of multiple species of non-coding RNAs by the reciprocal circulating chromatography method
-
Miyauchi,K., Ohara,T. and Suzuki,T. (2007) Automated parallel isolation of multiple species of non-coding RNAs by the reciprocal circulating chromatography method. Nucleic Acids Res., 35, e24.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Miyauchi, K.1
Ohara, T.2
Suzuki, T.3
-
33
-
-
0024290398
-
Interaction of tRNAs and of phosphorothioate-substituted nucleic acids with an organomercurial. Probing the chemical environment of thiolated residues by affinity electrophoresis
-
Igloi,G.L. (1988) Interaction of tRNAs and of phosphorothioate-substituted nucleic acids with an organomercurial. Probing the chemical environment of thiolated residues by affinity electrophoresis. Biochemistry, 27, 3842-3849.
-
(1988)
Biochemistry
, vol.27
, pp. 3842-3849
-
-
Igloi, G.L.1
-
34
-
-
13444306676
-
CYGD: The Comprehensive Yeast Genome Database
-
Guldener,U., Munsterkotter,M., Kastenmuller,G., Strack,N., van Helden,J., Lemer,C., Richelles,J., Wodak,S.J., Garcia-Martinez,J., Perez-Ortin,J.E. et al. (2005) CYGD: The Comprehensive Yeast Genome Database. Nucleic Acids Res., 33, D364-D368.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Guldener, U.1
Munsterkotter, M.2
Kastenmuller, G.3
Strack, N.4
van Helden, J.5
Lemer, C.6
Richelles, J.7
Wodak, S.J.8
Garcia-Martinez, J.9
Perez-Ortin, J.E.10
-
35
-
-
0344824569
-
Urmylation: A ubiquitin-like pathway that functions during invasive growth and budding in yeast
-
Goehring,A.S., Rivers,D.M. and Sprague,G.F. Jr. (2003) Urmylation: A ubiquitin-like pathway that functions during invasive growth and budding in yeast. Mol. Biol. Cell, 14, 4329-4341.
-
(2003)
Mol. Biol. Cell
, vol.14
, pp. 4329-4341
-
-
Goehring, A.S.1
Rivers, D.M.2
Sprague Jr., G.F.3
-
36
-
-
0142216125
-
Attachment of the ubiquitin-related protein Urm1p to the antioxidant protein Ahplp
-
Goehring,A.S., Rivers,D.M. and Sprague,G.F. Jr. (2003) Attachment of the ubiquitin-related protein Urm1p to the antioxidant protein Ahplp. Eukaryot. Cell, 2, 930-936.
-
(2003)
Eukaryot. Cell
, vol.2
, pp. 930-936
-
-
Goehring, A.S.1
Rivers, D.M.2
Sprague Jr., G.F.3
-
37
-
-
33846412972
-
Urmylation controls Nil1p and Gln3p-dependent expression of nitrogen-catabolite repressed genes in Saccharomyces cerevisiae
-
Rubio-Texeira,M. (2007) Urmylation controls Nil1p and Gln3p-dependent expression of nitrogen-catabolite repressed genes in Saccharomyces cerevisiae. FEBS Lett., 581, 541-550.
-
(2007)
FEBS Lett
, vol.581
, pp. 541-550
-
-
Rubio-Texeira, M.1
-
38
-
-
0034677757
-
A protein conjugation system in yeast with homology to biosynthetic enzyme reaction of prokaryotes
-
Furukawa,K., Mizushima,N., Noda,T. and Ohsumi,Y. (2000) A protein conjugation system in yeast with homology to biosynthetic enzyme reaction of prokaryotes. J. Biol. Chem., 275, 7462-7465.
-
(2000)
J. Biol. Chem
, vol.275
, pp. 7462-7465
-
-
Furukawa, K.1
Mizushima, N.2
Noda, T.3
Ohsumi, Y.4
-
39
-
-
55549137731
-
Thio modification of yeast cytosolic tRNA requires a ubiquitin-related system that resembles bacterial sulfur transfer systems
-
Nakai,Y., Nakai,M. and Hayashi,H. (2008) Thio modification of yeast cytosolic tRNA requires a ubiquitin-related system that resembles bacterial sulfur transfer systems. J. Biol. Chem., 283, 27469-27476.
-
(2008)
J. Biol. Chem
, vol.283
, pp. 27469-27476
-
-
Nakai, Y.1
Nakai, M.2
Hayashi, H.3
-
40
-
-
0036668633
-
The rhodanese/Cdc25 phosphatase superfamily. Sequence-structure-function relations
-
Bordo,D. and Bork,P. (2002) The rhodanese/Cdc25 phosphatase superfamily. Sequence-structure-function relations. EMBO Rep., 3, 741-746.
-
(2002)
EMBO Rep
, vol.3
, pp. 741-746
-
-
Bordo, D.1
Bork, P.2
-
41
-
-
45749124348
-
The sulfurtransferase activity of Uba4 presents a link between ubiquitin-like protein conjugation and activation of sulfur carrier proteins
-
Schmitz,J., Chowdhury,M.M., Hanzelmann,P., Nimtz,M., Lee,E.Y., Schindelin,H. and Leimkuhler,S. (2008) The sulfurtransferase activity of Uba4 presents a link between ubiquitin-like protein conjugation and activation of sulfur carrier proteins. Biochemistry, 47, 6479-6489.
-
(2008)
Biochemistry
, vol.47
, pp. 6479-6489
-
-
Schmitz, J.1
Chowdhury, M.M.2
Hanzelmann, P.3
Nimtz, M.4
Lee, E.Y.5
Schindelin, H.6
Leimkuhler, S.7
-
42
-
-
33749346301
-
Modification of proteins by ubiquitin and ubiquitin-like proteins
-
Kerscher,O., Felberbaum,R. and Hochstrasser,M. (2006) Modification of proteins by ubiquitin and ubiquitin-like proteins. Annu. Rev. Cell Dev. Biol., 22, 159-180.
-
(2006)
Annu. Rev. Cell Dev. Biol
, vol.22
, pp. 159-180
-
-
Kerscher, O.1
Felberbaum, R.2
Hochstrasser, M.3
-
43
-
-
0032568948
-
Thiamin biosynthesis in Escherichia coli. Identification of this thiocarboxylate as the immediate sulfur donor in the thiazole formation
-
Taylor,S.V., Kelleher,N.L., Kinsland,C., Chiu,H.J., Costello,C.A., Backstrom,A.D., McLafferty,F.W. and Begley,T.P. (1998) Thiamin biosynthesis in Escherichia coli. Identification of this thiocarboxylate as the immediate sulfur donor in the thiazole formation. J. Biol. Chem., 273, 16555-16560.
-
(1998)
J. Biol. Chem
, vol.273
, pp. 16555-16560
-
-
Taylor, S.V.1
Kelleher, N.L.2
Kinsland, C.3
Chiu, H.J.4
Costello, C.A.5
Backstrom, A.D.6
McLafferty, F.W.7
Begley, T.P.8
-
44
-
-
0035965266
-
Thiocarboxylation of molybdopterin synthase provides evidence for the mechanism of dithiolene formation in metal-binding pterins
-
Gutzke,G., Fischer,B., Mendel,R.R. and Schwarz,G. (2001) Thiocarboxylation of molybdopterin synthase provides evidence for the mechanism of dithiolene formation in metal-binding pterins. J. Biol. Chem., 276, 36268-36274.
-
(2001)
J. Biol. Chem
, vol.276
, pp. 36268-36274
-
-
Gutzke, G.1
Fischer, B.2
Mendel, R.R.3
Schwarz, G.4
-
45
-
-
0030794729
-
The ubiquitin-like protein Smt3p is activated for conjugation to other proteins by an Aos1p/Uba2p heterodimer
-
Johnson,E.S., Schwienhorst,I., Dohmen,R.J. and Blobel,G. (1997) The ubiquitin-like protein Smt3p is activated for conjugation to other proteins by an Aos1p/Uba2p heterodimer. EMBO J., 16, 5509-5519.
-
(1997)
EMBO J
, vol.16
, pp. 5509-5519
-
-
Johnson, E.S.1
Schwienhorst, I.2
Dohmen, R.J.3
Blobel, G.4
-
46
-
-
0032522382
-
A novel protein modification pathway related to the ubiquitin system
-
Liakopoulos,D., Doenges,G., Matuschewski,K. and Jentsch,S. (1998) A novel protein modification pathway related to the ubiquitin system. EMBO J., 17, 2208-2214.
-
(1998)
EMBO J
, vol.17
, pp. 2208-2214
-
-
Liakopoulos, D.1
Doenges, G.2
Matuschewski, K.3
Jentsch, S.4
-
47
-
-
0032898636
-
Apg7p/Cvt2p: A novel protein-activating enzyme essential for autophagy
-
Tanida,I., Mizushima,N., Kiyooka,M., Ohsumi,M., Ueno,T., Ohsumi,Y. and Kominami,E. (1999) Apg7p/Cvt2p: A novel protein-activating enzyme essential for autophagy. Mol. Biol. Cell, 10, 1367-1379.
-
(1999)
Mol. Biol. Cell
, vol.10
, pp. 1367-1379
-
-
Tanida, I.1
Mizushima, N.2
Kiyooka, M.3
Ohsumi, M.4
Ueno, T.5
Ohsumi, Y.6
Kominami, E.7
-
48
-
-
0037417771
-
MnmA and IscS are required for in vitro 2-thiouridine biosynthesis in Escherichia coli
-
Kambampati,R. and Lauhon,C.T. (2003) MnmA and IscS are required for in vitro 2-thiouridine biosynthesis in Escherichia coli. Biochemistry 42, 1109-1117.
-
(2003)
Biochemistry
, vol.42
, pp. 1109-1117
-
-
Kambampati, R.1
Lauhon, C.T.2
-
49
-
-
0021770444
-
Novel E. coli mutants deficient in biosynthesis of 5-methylaminomethyl-2-thiouridine
-
Elseviers,D., Petrullo,L.A. and Gallagher,P.J. (1984) Novel E. coli mutants deficient in biosynthesis of 5-methylaminomethyl-2-thiouridine. Nucleic Acids Res. 12, 3521-3534.
-
(1984)
Nucleic Acids Res
, vol.12
, pp. 3521-3534
-
-
Elseviers, D.1
Petrullo, L.A.2
Gallagher, P.J.3
-
50
-
-
0032553438
-
Reduced misreading of asparagine codons by Escherichia coli tRNALys with hypomodified derivatives of 5-methylaminomethyl-2-thiouridine in the wobble position
-
Hagervall,T.G., Pomerantz,S.C. and McCloskey,J.A. (1998) Reduced misreading of asparagine codons by Escherichia coli tRNALys with hypomodified derivatives of 5-methylaminomethyl-2-thiouridine in the wobble position. J. Mol. Biol., 284, 33-42.
-
(1998)
J. Mol. Biol
, vol.284
, pp. 33-42
-
-
Hagervall, T.G.1
Pomerantz, S.C.2
McCloskey, J.A.3
-
51
-
-
15444371415
-
An early step in wobble uridine tRNA modification requires the Elongator complex
-
Huang,B., Johansson,M.J. and Bystrom,A.S. (2005) An early step in wobble uridine tRNA modification requires the Elongator complex. RNA, 11, 424-436.
-
(2005)
RNA
, vol.11
, pp. 424-436
-
-
Huang, B.1
Johansson, M.J.2
Bystrom, A.S.3
-
52
-
-
0345060040
-
Novel methyltransferase for modified uridine residues at the wobble position of tRNA
-
Kalhor,H.R. and Clarke,S. (2003) Novel methyltransferase for modified uridine residues at the wobble position of tRNA. Mol. Cell. Biol., 23, 9283-9292.
-
(2003)
Mol. Cell. Biol
, vol.23
, pp. 9283-9292
-
-
Kalhor, H.R.1
Clarke, S.2
-
53
-
-
52949102950
-
A genome-wide screen identifies genes required for formation of the wobble nucleoside 5-methoxycarbonylmethyl-2-thiouridine in Saccharomyces cerevisiae
-
Huang,B., Lu,J. and Bystrom,A. (2008) A genome-wide screen identifies genes required for formation of the wobble nucleoside 5-methoxycarbonylmethyl-2-thiouridine in Saccharomyces cerevisiae. RNA, 14, 2183-2194.
-
(2008)
RNA
, vol.14
, pp. 2183-2194
-
-
Huang, B.1
Lu, J.2
Bystrom, A.3
-
54
-
-
57449121400
-
A functional proteomics approach links the ubiquitin-related modifier Urm1 to a tRNA modification pathway
-
Schlieker,C.D., Van der Veen,A.G., Damon,J.R., Spooner,E. and Ploegh,H.L. (2008) A functional proteomics approach links the ubiquitin-related modifier Urm1 to a tRNA modification pathway. Proc. Natl Acad. Sci. USA, 105, 18255-18260.
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 18255-18260
-
-
Schlieker, C.D.1
Van der Veen, A.G.2
Damon, J.R.3
Spooner, E.4
Ploegh, H.L.5
-
55
-
-
0034253588
-
Evolution and function of ubiquitin-like protein-conjugation systems
-
Hochstrasser,M. (2000) Evolution and function of ubiquitin-like protein-conjugation systems. Nat. Cell Biol., 2, E153-E157.
-
(2000)
Nat. Cell Biol
, vol.2
-
-
Hochstrasser, M.1
-
56
-
-
0034915764
-
Mechanisms underlying ubiquitination
-
Pickart,C.M. (2001) Mechanisms underlying ubiquitination. Annu. Rev. Biochem., 70, 503-533.
-
(2001)
Annu. Rev. Biochem
, vol.70
, pp. 503-533
-
-
Pickart, C.M.1
-
57
-
-
1342307414
-
The conserved Cys-X1-X2-Cys motif present in the TtcA protein is required for the thiolation of cytidine in position 32 of tRNA from Salmonella enterica serovar Typhimurium
-
Jager,G., Leipuviene,R., Pollard,M.G., Qian,Q. and Bjork,G.R. (2004) The conserved Cys-X1-X2-Cys motif present in the TtcA protein is required for the thiolation of cytidine in position 32 of tRNA from Salmonella enterica serovar Typhimurium. J. Bacteriol., 186, 750-757.
-
(2004)
J. Bacteriol
, vol.186
, pp. 750-757
-
-
Jager, G.1
Leipuviene, R.2
Pollard, M.G.3
Qian, Q.4
Bjork, G.R.5
-
58
-
-
22544480568
-
Molecular mechamism of lysidine synthesis that determines tRNA identity and codon recognition
-
Ikeuchi,Y., Soma,A., Ote,T., Kato,J., Sekine,Y. and Suzuki,T. (2005) Molecular mechamism of lysidine synthesis that determines tRNA identity and codon recognition. Mol. Cell, 19, 235-246.
-
(2005)
Mol. Cell
, vol.19
, pp. 235-246
-
-
Ikeuchi, Y.1
Soma, A.2
Ote, T.3
Kato, J.4
Sekine, Y.5
Suzuki, T.6
-
59
-
-
0034646676
-
Evidence for the transfer of sulfane sulfur from IscS to ThiI during the in vitro biosynthesis of 4-thiouridine in Escherichia coli tRNA
-
Kambampati,R. and Lauhon,C.T. (2000) Evidence for the transfer of sulfane sulfur from IscS to ThiI during the in vitro biosynthesis of 4-thiouridine in Escherichia coli tRNA. J. Biol. Chem., 275, 10727-10730.
-
(2000)
J. Biol. Chem
, vol.275
, pp. 10727-10730
-
-
Kambampati, R.1
Lauhon, C.T.2
-
60
-
-
0033565665
-
The mitochondrial proteins Atm1p and Nfs1p are essential for biogenesis of cytosolic Fe/S proteins
-
Kispal,G., Csere,P., Prohl,C. and Lill,R. (1999) The mitochondrial proteins Atm1p and Nfs1p are essential for biogenesis of cytosolic Fe/S proteins. EMBO J., 18, 3981-3989.
-
(1999)
EMBO J
, vol.18
, pp. 3981-3989
-
-
Kispal, G.1
Csere, P.2
Prohl, C.3
Lill, R.4
-
61
-
-
0032722872
-
Yeast mitochondrial protein, Nfs1p, coordinately regulates iron-sulfur cluster proteins, cellular iron uptake, and iron distribution
-
Li,J., Kogan,M., Knight,S.A., Pain,D. and Dancis,A. (1999) Yeast mitochondrial protein, Nfs1p, coordinately regulates iron-sulfur cluster proteins, cellular iron uptake, and iron distribution. J. Biol. Chem. 274, 33025-33034.
-
(1999)
J. Biol. Chem
, vol.274
, pp. 33025-33034
-
-
Li, J.1
Kogan, M.2
Knight, S.A.3
Pain, D.4
Dancis, A.5
-
62
-
-
0031813621
-
cDNA cloning and characterization of mouse nifS-like protein, m-Nfs1: Mitochondrial localization of eukaryotic NifS-like proteins
-
Nakai,Y., Yoshihara,Y., Hayashi,H. and Kagamiyama,H. (1998) cDNA cloning and characterization of mouse nifS-like protein, m-Nfs1: Mitochondrial localization of eukaryotic NifS-like proteins. FEBS Lett., 433 143-148.
-
(1998)
FEBS Lett
, vol.433
, pp. 143-148
-
-
Nakai, Y.1
Yoshihara, Y.2
Hayashi, H.3
Kagamiyama, H.4
-
63
-
-
0037087575
-
Subcellular localization of the yeast proteome
-
Kumar,A., Agarwal,S., Heyman,J.A., Matson,S., Heidtman,M., Piccirillo,S., Umansky,L., Drawid,A., Jansen,R., Liu,Y. et al. (2002) Subcellular localization of the yeast proteome. Genes Dev., 16, 707-719.
-
(2002)
Genes Dev
, vol.16
, pp. 707-719
-
-
Kumar, A.1
Agarwal, S.2
Heyman, J.A.3
Matson, S.4
Heidtman, M.5
Piccirillo, S.6
Umansky, L.7
Drawid, A.8
Jansen, R.9
Liu, Y.10
-
64
-
-
0142184341
-
Global analysis of protein localization in budding yeast
-
Huh,W.K., Falvo,J.V., Gerke,L.C., Carroll,A.S., Howson,R.W., Weissman,J.S. and O'Shea,E.K. (2003) Global analysis of protein localization in budding yeast. Nature, 425, 686-691.
-
(2003)
Nature
, vol.425
, pp. 686-691
-
-
Huh, W.K.1
Falvo, J.V.2
Gerke, L.C.3
Carroll, A.S.4
Howson, R.W.5
Weissman, J.S.6
O'Shea, E.K.7
-
65
-
-
0345687191
-
The proteome of Saccharomyces cerevisiae mitochondria
-
Sickmann,A., Reinders,J., Wagner,Y., Joppich,C., Zahedi,R., Meyer,H.E., Schonfisch,B., Perschil,I., Chacinska,A., Guiard,B. et al. (2003) The proteome of Saccharomyces cerevisiae mitochondria. Proc. Natl Acad. Sci. USA, 100, 13207-13212.
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 13207-13212
-
-
Sickmann, A.1
Reinders, J.2
Wagner, Y.3
Joppich, C.4
Zahedi, R.5
Meyer, H.E.6
Schonfisch, B.7
Perschil, I.8
Chacinska, A.9
Guiard, B.10
-
66
-
-
0030868420
-
Biosynthesis and processing of the molybdenum cofactors
-
Rajagopalan,K.V. (1997) Biosynthesis and processing of the molybdenum cofactors. Biochem. Soc. Trans., 25, 757-761.
-
(1997)
Biochem. Soc. Trans
, vol.25
, pp. 757-761
-
-
Rajagopalan, K.V.1
-
67
-
-
0035860726
-
Characterization of Escherichia coli MoeB and its involvement in the activation of molybdopterin synthase for the biosynthesis of the molybdenum cofactor
-
Leimkuhler,S., Wuebbens,M.M. and Rajagopalan,K.V. (2001) Characterization of Escherichia coli MoeB and its involvement in the activation of molybdopterin synthase for the biosynthesis of the molybdenum cofactor. J. Biol. Chem., 276, 34695-34701.
-
(2001)
J. Biol. Chem
, vol.276
, pp. 34695-34701
-
-
Leimkuhler, S.1
Wuebbens, M.M.2
Rajagopalan, K.V.3
-
68
-
-
0035933851
-
A sulfurtransferase is required in the transfer of cysteine sulfur in the in vitro synthesis of molybdopterin from precursor Z in Escherichia coli
-
Leimkuhler,S. and Rajagopalan,K.V. (2001) A sulfurtransferase is required in the transfer of cysteine sulfur in the in vitro synthesis of molybdopterin from precursor Z in Escherichia coli. J. Biol. Chem. 276, 22024-22031.
-
(2001)
J. Biol. Chem
, vol.276
, pp. 22024-22031
-
-
Leimkuhler, S.1
Rajagopalan, K.V.2
-
69
-
-
36749085941
-
Trm9-catalyzed tRNA modifications link translation to the DNA damage response
-
Begley,U., Dyavaiah,M., Patil,A., Rooney,J.P., DiRenzo,D., Young,C.M., Conklin,D.S., Zitomer,R.S. and Begley,T.J. (2007) Trm9-catalyzed tRNA modifications link translation to the DNA damage response. Mol. Cell 28, 860-870.
-
(2007)
Mol. Cell
, vol.28
, pp. 860-870
-
-
Begley, U.1
Dyavaiah, M.2
Patil, A.3
Rooney, J.P.4
DiRenzo, D.5
Young, C.M.6
Conklin, D.S.7
Zitomer, R.S.8
Begley, T.J.9
-
70
-
-
0034708503
-
Evidence that ThiI, an enzyme shared between thiamin and 4-thiouridine biosynthesis, may be a sulfurtransferase that proceeds through a persulfide intermediate
-
Palenchar,P.M., Buck,C.J., Cheng,H., Larson,T.J. and Mueller,E.G. (2000) Evidence that ThiI, an enzyme shared between thiamin and 4-thiouridine biosynthesis, may be a sulfurtransferase that proceeds through a persulfide intermediate. J. Biol. Chem., 275, 8283-8286.
-
(2000)
J. Biol. Chem
, vol.275
, pp. 8283-8286
-
-
Palenchar, P.M.1
Buck, C.J.2
Cheng, H.3
Larson, T.J.4
Mueller, E.G.5
-
71
-
-
34249278086
-
Site-directed mutagenesis of the active site loop of the rhodanese-like domain of the human molybdopterin synthase sulfurase MOCS3. Major differences in substrate specificity between eukaryotic and bacterial homologs
-
Krepinsky,K. and Leimkuhler,S. (2007) Site-directed mutagenesis of the active site loop of the rhodanese-like domain of the human molybdopterin synthase sulfurase MOCS3. Major differences in substrate specificity between eukaryotic and bacterial homologs. FEBS J., 274, 2778-2787.
-
(2007)
FEBS J
, vol.274
, pp. 2778-2787
-
-
Krepinsky, K.1
Leimkuhler, S.2
-
72
-
-
0038168025
-
Mechanistic studies of human molybdopterin synthase reaction and characterization of mutants identified in group B patients of molybdenum cofactor deficiency
-
Leimkuhler,S., Freuer,A., Araujo,J.A., Rajagopalan,K.V. and Mendel,R.R. (2003) Mechanistic studies of human molybdopterin synthase reaction and characterization of mutants identified in group B patients of molybdenum cofactor deficiency. J. Biol. Chem., 278, 26127-26134.
-
(2003)
J. Biol. Chem
, vol.278
, pp. 26127-26134
-
-
Leimkuhler, S.1
Freuer, A.2
Araujo, J.A.3
Rajagopalan, K.V.4
Mendel, R.R.5
-
73
-
-
0028231006
-
Regulation of THI4 (MOL1), a thiamine-biosynthetic gene of Saccharomyces cerevisiae
-
Praekelt,U.M., Byrne,K.L. and Meacock,P.A. (1994) Regulation of THI4 (MOL1), a thiamine-biosynthetic gene of Saccharomyces cerevisiae. Yeast, 10, 481-490.
-
(1994)
Yeast
, vol.10
, pp. 481-490
-
-
Praekelt, U.M.1
Byrne, K.L.2
Meacock, P.A.3
-
74
-
-
54449085541
-
A novel role for human Nfs1 in the cytoplasm: Nfs1 acts as a sulfur donor for MOCS3, a protein involved in molybdenum cofactor biosynthesis
-
Marelja,Z., Stocklein,W., Nimtz,M. and Leimkuhler,S. (2008) A novel role for human Nfs1 in the cytoplasm: Nfs1 acts as a sulfur donor for MOCS3, a protein involved in molybdenum cofactor biosynthesis. J. Biol. Chem., 283, 25178-25185.
-
(2008)
J. Biol. Chem
, vol.283
, pp. 25178-25185
-
-
Marelja, Z.1
Stocklein, W.2
Nimtz, M.3
Leimkuhler, S.4
-
75
-
-
0038523874
-
Synthetic lethal analysis implicates Ste20p, a p21-activated potein kinase, in polarisome activation
-
Goehring,A.S., Mitchell,D.A., Tong,A.H., Keniry,M.E., Boone,C. and Sprague,G.F. Jr. (2003) Synthetic lethal analysis implicates Ste20p, a p21-activated potein kinase, in polarisome activation. Mol. Biol. Cell, 14, 1501-1516.
-
(2003)
Mol. Biol. Cell
, vol.14
, pp. 1501-1516
-
-
Goehring, A.S.1
Mitchell, D.A.2
Tong, A.H.3
Keniry, M.E.4
Boone, C.5
Sprague Jr., G.F.6
-
76
-
-
0000300772
-
Purification and characterization of a second type thioredoxin peroxidase (type II TPx) from Saccharomyces cerevisiae
-
Jeong,J.S., Kwon,S.J., Kang,S.W., Rhee,S.G. and Kim,K. (1999) Purification and characterization of a second type thioredoxin peroxidase (type II TPx) from Saccharomyces cerevisiae. Biochemistry 38, 776-783.
-
(1999)
Biochemistry
, vol.38
, pp. 776-783
-
-
Jeong, J.S.1
Kwon, S.J.2
Kang, S.W.3
Rhee, S.G.4
Kim, K.5
-
77
-
-
0000056465
-
Distinct physiological functions of thiol peroxidase isoenzymes in Saccharomyces cerevisiae
-
Park,S.G., Cha,M.K., Jeong,W. and Kim,I.H. (2000) Distinct physiological functions of thiol peroxidase isoenzymes in Saccharomyces cerevisiae. J. Biol. Chem., 275, 5723-5732.
-
(2000)
J. Biol. Chem
, vol.275
, pp. 5723-5732
-
-
Park, S.G.1
Cha, M.K.2
Jeong, W.3
Kim, I.H.4
-
78
-
-
0016219098
-
Replacement of ribothymidine by 5-methyl-2-thiouridine in sequence GT psi C in tRNA of an extreme thermophile
-
Watanabe,K., Oshima,T., Saneyoshi,M. and Nishimura,S. (1974) Replacement of ribothymidine by 5-methyl-2-thiouridine in sequence GT psi C in tRNA of an extreme thermophile. FEBS Lett., 43, 59-63.
-
(1974)
FEBS Lett
, vol.43
, pp. 59-63
-
-
Watanabe, K.1
Oshima, T.2
Saneyoshi, M.3
Nishimura, S.4
-
79
-
-
0023461673
-
Dynamic structures and functions of transfer ribonucleic acids from extreme thermophiles
-
Yokoyama,S., Watanabe,K. and Miyazawa,T. (1987) Dynamic structures and functions of transfer ribonucleic acids from extreme thermophiles. Adv. Biophys., 23, 115-147.
-
(1987)
Adv. Biophys
, vol.23
, pp. 115-147
-
-
Yokoyama, S.1
Watanabe, K.2
Miyazawa, T.3
-
80
-
-
33744946077
-
Identification of two tRNA thiolation genes required for cell growth at extremely high temperatures
-
Shigi,N., Sakaguchi,Y., Suzuki,T. and Watanabe,K. (2006) Identification of two tRNA thiolation genes required for cell growth at extremely high temperatures. J. Biol. Chem., 281, 14296-14306.
-
(2006)
J. Biol. Chem
, vol.281
, pp. 14296-14306
-
-
Shigi, N.1
Sakaguchi, Y.2
Suzuki, T.3
Watanabe, K.4
-
81
-
-
58049192822
-
Common thiolation mechanism in the biosynthesis of tRNA thiouridine and sulphur-containing cofactors
-
Shigi,N., Sakaguchi,Y., Asai,S.I., Suzuki,T. and Watanabe,K. (2008) Common thiolation mechanism in the biosynthesis of tRNA thiouridine and sulphur-containing cofactors. EMBO J., 27, 3267-3278.
-
(2008)
EMBO J
, vol.27
, pp. 3267-3278
-
-
Shigi, N.1
Sakaguchi, Y.2
Asai, S.I.3
Suzuki, T.4
Watanabe, K.5
-
82
-
-
0031574072
-
The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson,J.D., Gibson,T.J., Plewniak,F., Jeanmougin,F. and Higgins,D.G. (1997) The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res., 25, 4876-4882.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
|