Rapid DNA hybridization in microfluidics

TrAC - Trends in Analytical Chemistry

Volumn 33, Issue , 2012, Pages 9-22

  Henry, Olivier Y F ^a   O'Sullivan, Ciara K ^b  

^a UNIVERSITAT ROVIRA I VIRGILI   (Spain)

^b INSTITUCIÓ CATALANA DE RECERCA I ESTUDIS AVANÇATS ICREA   (Spain)

Author keywords

Centrifugal fluid actuation; DNA; Electrophoresis; Genetic testing; Hybridization; Micro total analytical system; Microarray; Microcavitation; Microfluidics; Oligonucleotide

Indexed keywords

ANALYTICAL SYSTEMS; CENTRIFUGAL FLUIDS; GENETIC TESTING; HYBRIDIZATION; MICROCAVITATION;

CENTRIFUGATION; DISEASE CONTROL; ELECTROPHORESIS; MICROARRAYS; MICROFLUIDICS; OLIGONUCLEOTIDES; RELIABILITY ANALYSIS;

DNA;

ACRYLAMIDE; DIMETICONE; DNA; DOUBLE STRANDED DNA; QUANTUM DOT; SINGLE STRANDED DNA;

ADVECTION; CAPILLARY ELECTROPHORESIS; CENTRIFUGAL ANALYZER; DNA DETERMINATION; DNA DNA HYBRIDIZATION; DNA HYBRIDIZATION; DNA PROBE; FINITE ELEMENT ANALYSIS; GENETIC SCREENING; GRAVITY; HUMAN; LABORATORY TEST; LIMIT OF DETECTION; MICROBUBBLE; MICROFLUIDIC ANALYSIS; NONHUMAN; POLYACRYLAMIDE GEL ELECTROPHORESIS; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RELIABILITY; REVIEW; SENSITIVITY ANALYSIS; SIMPLE SEQUENCE REPEAT; SINGLE NUCLEOTIDE POLYMORPHISM;

EID: 84857503889     PISSN: 01659936     EISSN: 18793142     Source Type: Journal    
DOI: 10.1016/j.trac.2011.09.014     Document Type: Review

References (101)

1. Amir-Aslani A., Mangematin V. Technol. Forecast. Social Change 2010, 77:203.
2. Khan M.A.K., Long Y.T., Schatte G., Kraatz H.B. Anal. Chem. 2007, 79:2877.
3. Kroger S., Law R.J. Trends Biotechnol. 2005, 23:250.
4. Lee T.M.H. Sensors 2008, 8:5535.
5. Palchetti I., Mascini M. Analyst (Cambridge, UK) 2008, 133:846.
6. Sims M.R., Cullen D.C., Bannister N.P., Grant W.D., Henry O., Jones R., McKnight D., Thompson D.P., Wilson P.K. Planet. Space Sci. 2005, 53:781.
7. Tecon R., van der Meer J.R. Sensors 2008, 8:4062.
8. Venugopal V. Biosens. Bioelectron. 2002, 17:147.
9. Hassibi A., Vikalo H., Riechmann J.L., Hassibi B. Nucl. Acids Res. 2009, 37:e132.
10. Chan V., Graves D.J., McKenzie S.E. Biophys. J. 1995, 69:2243.
11. Vontel S., Ramakrishnan A., Sadana A. Biotechnol. Appl. Biochem. 2000, 31:161.
12. Wetmur J.G. Crit. Rev. Biochem. Mol. Biol. 1991, 26:227.
13. Herne T.M., Tarlov M.J. J. Am. Chem. Soc. 1997, 119:8916.
14. Korri-Youssoufi H., Garnier F., Srivastava P., Godillot P., Yassarp A. J. Am. Chem. Soc. 1997, 119:7388.
15. Lemieux B., Aharoni A., Schena M. Mol. Breed. 1998, 4:277.
16. Murphy J.N., Cheng A.K.H., Yu H.-Z., Bizzotto D. J. Am. Chem. Soc. 2009, 131:4042.
17. Rickman D.S., Herbert C.J., Aggerbeck L.P. Nucl. Acids Res. 2003, 31:e109.
18. Levicky R., Horgan A. Trends Biotechnol. 2005, 23:143.
19. Das S., Das T., Chakraborty S. Microfluid. Nanofluid. 2006, 2:37.
20. Batchelor-McAuley C., Wildgoose G.G., Compton R.G. Biosens. Bioelectron. 2009, 24:3183.
21. Bishop J., Chagovetz A.M., Blair S. Biophys. J. 2008, 94:1726.
22. Keighley S.D., Li P., Estrela P., Mighorato P. Biosens. Bioelectron. 2008, 23:1291.
23. Boozer C., Chen S.F., Jiang S.Y. Langmuir 2006, 22:4694.
24. Henry O.Y.F., Acero Sanchez J.L., O'Sullivan C.K. Biosens. Bioelectron. 2010, 26:1500.
25. Georgiadis R., Peterlinz K.P., Peterson A.W. J. Am. Chem. Soc. 2000, 122:3166.
26. Peterson A.W., Heaton R.J., Georgiadis R.M. Nucl. Acids Res. 2001, 29:5163.
27. Skvortsov D., Abdueva D., Curtis C., Schaub B., Tavaré S. Nucl. Acids Res. 2007, 35:4154.
28. H. Vikalo, B. Hassibi, A. Hassibi, IEEE J. Select. Topics Signal Process. Special Issue Genomic Proteomic Signal Process. 2 (2008) 286.
29. Zeng J., Almadidy A., Watterson J., Krull U.J. Sens. Actuators, B 2003, 90:68.
30. Erickson D., Li D., Krull U.J. Anal. Biochem. 2003, 317:186.
31. Jobs M., Fredriksson S., Brookes A.J., Landegren U. Anal. Chem. 2002, 74:199.
32. Peterson A.W., Heaton R.J., Georgiadis R. J. Am. Chem. Soc. 2000, 122:7837.
33. Levicky R., Herne T.M., Tarlov M.J., Satija S.K. J. Am. Chem. Soc. 1998, 120:9787.
34. Tegenfeldt J., Prinz C., Cao H., Huang R., Austin R., Chou S., Cox E., Sturm J. Anal. Bioanal. Chem. 2004, 378:1678.
35. Lien K.Y., Lee G.B. Analyst (Cambridge, UK) 2010, 135:1499.
36. Erickson D., Liu X., Krull U., Li D. Anal. Chem. 2004, 76:7269.
37. Zheng J., Li H.W., Yeung E.S. J. Phys. Chem. B 2004, 108:10357.
38. Zheng J., Yeung E.S. Anal. Chem. 2003, 75:3675.
39. Kim J.H.-S., Marafie A., Jia X.-Y., Zoval J.V., Madou M.J. Sens. Actuators, B 2006, 113:281.
40. Huber D.E., Markel M.L., Pennathur S., Patel K.D. Lab Chip 2009, 9:2933.
41. Sosnowski R.G., Tu E., Butler W.F., O'Connell J.P., Heller M.J. Proc. Natl. Acad. Sci. USA 1997, 94:1119.
42. Gurtner C., Tu E., Jamshidi N., Haigis R.W., Onofrey T.J., Edman C.F., Sosnowski R., Wallace B., Heller M.J. Electrophoresis 2002, 23:1543.
43. Gilles P.N., Wu D.J., Foster C.B., Dillon P.J., Chanock S.J. Nat. Biotechnol. 1999, 17:365.
44. Radtkey R., Feng L., Muralhidar M., Duhon M., Canter D., DiPierro D., Fallon S., Tu E., McElfresh K., Nerenberg M., Sosnowski R. Nucl. Acids Res. 2000, 28:e17.
45. Edman C.F., Mehta P., Press R., Spargo C.A., Walker G.T., Nerenberg M. J. Invest. Medicine 2000, 48:93.
46. Ewalt K.L., Haigis R.W., Rooney R., Ackley D., Krihak M. Anal. Biochem. 2001, 289:162.
47. Westin L., Miller C., Vollmer D., Canter D., Radtkey R., Nerenberg M., O'Connell J.P. J. Clin. Microbiol. 2001, 39:1097.
48. Kassegne S.K., Reese H., Hodko D., Yang J.M., Sarkar K., Smolko D., Swanson P., Raymond D.E., Heller M.J., Madou M.J. Sens. Actuators, B 2003, 94:81.
49. Kassegne S., Arya B., Yadav N. Sens. Actuators, B 2010, 143:470.
50. Wong I.Y., Melosh N.A. Biophys. J. 2010, 98:2954.
51. Pohl H.A. Dielectrophoresis the Behavior of Neutral Matter in Nonuniform Electric Fields 1978, Cambridge University Press, Cambridge, UK.
52. Cheng I.F., Senapati S., Cheng X., Basuray S., Chang H.C. Lab Chip 2010, 10:828.
53. Swami N., Chou C.F., Ramamurthy V., Chaurey V. Lab Chip 2009, 9:3212.
54. Henning A., Bier F.F., Hölzel R. Biomicrofluidics 2010, 4:3.
55. Kenney M., Ray S., Boles T.C. Biotechniques 1998, 25:516.
56. Nelson C., Hendy S., Reid K., Cavanagh J. BioTechniques 2002, 32:808.
57. Rubina A.Y., Pan'kov S.V., Dementieva E.I., Pen'kov D.N., Butygin A.V., Vasiliskov V.A., Chudinov A.V., Mikheikin A.L., Mikhailovich V.M., Mirzabekov A.D. Anal. Biochem. 2004, 325:92.
58. Olsen K.G., Ross D.J., Tarlov M.J. Anal. Chem. 2002, 74:1436.
59. Zangmeister R.A., Tarlov M.J. Langmuir 2003, 19:6901.
60. Han A., Inoue A., Hosokawa K., Maeda M. Anal. Biochem. 2007, 371:124.
61. Inoue A., Han A., Makino K., Hosokawa K., Maeda M. Lab Chip 2009, 9:3297.
62. Duffy D.C., McDonald J.C., Schueller O.J.A., Whitesides G.M. Anal. Chem. 1998, 70:4974.
63. Thorslund S., Klett O., Nikolajeff F., Markides K., Bergquist J. Biomed. Microdev. 2006, 8:73.
64. Zhou J., Ellis A.V., Voelcker N.H. Electrophoresis 2010, 31:2.
65. Ito T., Inoue A., Sato K., Hosokawa K., Maeda M. Anal. Chem. 2005, 77:4759.
66. Laser D.J., Santiago J.G. J. Micromech. Microeng. 2004, 14:R35.
67. Oh K.W., Ahn C.H. J. Micromech. Microeng. 2006, 16:R13.
68. Tabeling P. Lab Chip 2009, 9:2428.
69. Kohara Y. Anal. Chem. 2003, 75:3079.
70. Kim J., Heo J., Crooks R.M. Langmuir 2006, 22:10130.
71. Ng J.K.K., Feng H., Liu W.T. Anal. Chim. Acta 2007, 582:295.
72. Vojtísek M., Iles A., Pamme N. Biosens. Bioelectron. 2010, 25:2172.
73. Peyman S.A., Patel H., Belli N., Iles A., Pamme N. Magnetohydrodynamics 2009, 361.
74. Stremler M.A., Cola B.A. Phys. Fluids 2006, 18:011701.
75. Cola B.A., Schaffer D.K., Fisher T.S., Stremler M.A. J. Microelectromech. Syst. 2006, 15:259.
76. McQuain M.K., Seale K., Peek J., Fisher T.S., Levy S., Stremler M.A., Haselton F.R. Anal. Biochem. 2004, 325:215.
77. Raynal F., Beuf A., Plaza F., Scott J., Carrire P., Cabrera M., Cloarec J.P., Souteyrand E. Phys. Fluids 2007, 19:017112.
78. Raynal F., Plaza F., Beuf A., Carrie P., Souteyrand E., Martin J.R., Cloarec J.P., Cabrera M. Phys. Fluids 2004, 16:L63.
79. Stremler M.A., Haselton F.R., Aref H. Philos. Trans. R. Soc. London, Ser. A 2004, 362:1019.
80. Huang S., Li C., Lin B., Qin J. Lab Chip 2010, 10:2925.
81. Heule M., Manz A. Lab Chip 2004, 4:506.
82. Briones M.P., Yamashita K., Numata S., Miyazaki M., Nakamura Y., Maeda H. Int. Conf. Microtechnol. Med. Biol. 2006, 209.
83. Yamashita K., Yamaguchi Y., Miyazaki M., Nakamura H., Shimizu H., Maeda H. Lab Chip 2004, 4:1.
84. Hsieh A.T.H., Pan P.J.H., Lee A.P. Microfluid. Nanofluid. 2009, 6:391.
85. Zhang H., Xu T., Li C.W., Yang M. Biosens. Bioelectron. 2010, 25:2402.
86. Laschi S., Miranda-Castro R., Gonzalez-Fernandez E., Palchetti I., Reymond F., Rossier J.S., Marrazza G. Electrophoresis 2010, 31:3727.
87. Glynou K., Ioannou P.C., Christopoulos T.K., Syriopoulou V. Anal. Chem. 2003, 75:4155.
88. Matsubara Y., Kure S. Human Mutat. 2003, 22:166.
89. Haeberle S., Zengerle R. Lab Chip 2007, 7:1094.
90. Vlachou M.A., Glynou K.M., Ioannou P.C., Christopoulos T.K., Vartholomatos G. Biosens. Bioelectron. 2010, 26:228.
91. Madou M., Zoval J., Jia G., Kido H., Kim J., Kim N. Annu. Rev. Biomed. Eng. 2006, 8:601.
92. Gorkin R., Park J., Siegrist J., Amasia M., Lee B.S., Park J.M., Kim J., Kim H., Madou M., Cho Y.K. Lab Chip 2010, 10:1758.
93. Peytavi R., Raymond F.R., Gagno D., Picard F.J., Jia G., Zoval J., Madou M., Boissinot K., Boissinot M., Bissonnette L., Ouellette M., Bergeron M.G. Clin. Chem. 2005, 51:1836.
94. Jia G., Ma K.S., Kim J., Zoval J.V., Peytavi R., Bergeron M.G., Madou M.J. Sens. Actuators, B 2006, 114:173.
95. Wang L., Li P.C.H., Yu H.Z., Parameswaran A.M. Anal. Chim. Acta 2008, 610:97.
96. Wang L., Li P.C.H. Anal. Biochem. 2010, 400:282.
97. Li C., Dong X., Qin J., Lin B. Anal. Chim. Acta 2009, 640:93.
98. Deng P., Lee Y.K., Cheng P. Biosens. Bioelectron. 2006, 21:1443.
99. Elder S.A. J. Acoust. Soc. Am. 1959, 31:54.
100. Liu R.H., Lenigk R., Druyor-Sanchez R.L., Yang J., Grodzinski P. Anal. Chem. 2003, 75:1911.
101. Liu R.H., Yang J., Pindera M.Z., Athavale M., Grodzinski P. Lab Chip 2002, 2:151.