메뉴 건너뛰기




Volumn 143, Issue 2, 2010, Pages 470-481

Numerical modeling of the effect of histidine protonation on pH distribution and DNA hybridization in electronically active microarrays

Author keywords

Buffers; DNA hybridization; Electrokinetics; Electromigration; Electronically active microarrays; FEA; Histidine; Hybridization efficiency; Nucleotides; pH; Protonation; Reaction rates

Indexed keywords

ACTIVE MICROARRAY; BUFFERS; DNA HYBRIDIZATION; ELECTRONICALLY ACTIVE MICROARRAYS; HYBRIDIZATION EFFICIENCY; PROTONATION REACTIONS;

EID: 73149108401     PISSN: 09254005     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.snb.2009.09.044     Document Type: Article
Times cited : (8)

References (32)
  • 1
    • 0031029961 scopus 로고    scopus 로고
    • Rapid determination of single base mismatch mutations in DNA hybrids by direct electric field control
    • Sosnowski R.G., Tu E., Butler W.F., O'Connell J.P., and Heller M.J. Rapid determination of single base mismatch mutations in DNA hybrids by direct electric field control. Proc. Natl. Acad. Sci. 94 (1997) 1119-1123
    • (1997) Proc. Natl. Acad. Sci. , vol.94 , pp. 1119-1123
    • Sosnowski, R.G.1    Tu, E.2    Butler, W.F.3    O'Connell, J.P.4    Heller, M.J.5
  • 2
    • 0033621575 scopus 로고    scopus 로고
    • Active microelectronic chip devices which utilize controlled electrophoretic fields for multiplex DNA hybridization and other genomic applications
    • Heller M.J., Forster A.H., and Tu E. Active microelectronic chip devices which utilize controlled electrophoretic fields for multiplex DNA hybridization and other genomic applications. J. Electrophor. 21 (2000) 157-164
    • (2000) J. Electrophor. , vol.21 , pp. 157-164
    • Heller, M.J.1    Forster, A.H.2    Tu, E.3
  • 3
    • 0036405278 scopus 로고    scopus 로고
    • DNA microarray technology: devices, systems, and applications
    • Heller M.J. DNA microarray technology: devices, systems, and applications. Ann. Rev. Biomed. Eng. 4 (2002) 129-153
    • (2002) Ann. Rev. Biomed. Eng. , vol.4 , pp. 129-153
    • Heller, M.J.1
  • 4
    • 0033891762 scopus 로고    scopus 로고
    • Monitoring the expression profiles of doxorubicin-induced and doxorubicin-resistant cancer cells by cDNA microarray
    • Kudoh K., Ramanna M., Ravatn R., Elkahloun A.G., Bittner M.L., Meltzer P.S., et al. Monitoring the expression profiles of doxorubicin-induced and doxorubicin-resistant cancer cells by cDNA microarray. Cancer Res. 60 (2000) 4161-4166
    • (2000) Cancer Res. , vol.60 , pp. 4161-4166
    • Kudoh, K.1    Ramanna, M.2    Ravatn, R.3    Elkahloun, A.G.4    Bittner, M.L.5    Meltzer, P.S.6
  • 7
    • 0033982165 scopus 로고    scopus 로고
    • Shotgun DNA microarrays and stage-specific gene expression in Plasmodium falciparum malaria
    • Hayward R.E., Derisi J.L., Alfahdi S., Kaslow D.C., Brown P.O., and Rathod P.K. Shotgun DNA microarrays and stage-specific gene expression in Plasmodium falciparum malaria. Mol. Microbiol. 35 1 (2000) 6-14
    • (2000) Mol. Microbiol. , vol.35 , Issue.1 , pp. 6-14
    • Hayward, R.E.1    Derisi, J.L.2    Alfahdi, S.3    Kaslow, D.C.4    Brown, P.O.5    Rathod, P.K.6
  • 8
    • 30344484578 scopus 로고    scopus 로고
    • Recent applications of DNA microarray technology to toxicology and ecotoxicology
    • Lettieri T. Recent applications of DNA microarray technology to toxicology and ecotoxicology. Environ. Health Perspect. 114 1 (2006) 4-9
    • (2006) Environ. Health Perspect. , vol.114 , Issue.1 , pp. 4-9
    • Lettieri, T.1
  • 14
    • 0034837991 scopus 로고    scopus 로고
    • On-chip electrophoretic accumulation of DNA-oligomers and streptavidin
    • Stelzle M., Durr M., and Nisch W. On-chip electrophoretic accumulation of DNA-oligomers and streptavidin. J. Anal. Chem. 371 (2001) 112-119
    • (2001) J. Anal. Chem. , vol.371 , pp. 112-119
    • Stelzle, M.1    Durr, M.2    Nisch, W.3
  • 15
    • 0037620483 scopus 로고    scopus 로고
    • Modelling of DNA hybridization kinetics for spatially resolved biochips
    • Erickson D., Li D., and Krull U.J. Modelling of DNA hybridization kinetics for spatially resolved biochips. Anal. Biochem. 317 (2003) 186-200
    • (2003) Anal. Biochem. , vol.317 , pp. 186-200
    • Erickson, D.1    Li, D.2    Krull, U.J.3
  • 16
    • 29244448286 scopus 로고    scopus 로고
    • Characterization of DNA hybridization kinetics in a microfluidic flow channel
    • Kim J., Marafie A., Jia X.Y., Zoval J., and Madou M.J. Characterization of DNA hybridization kinetics in a microfluidic flow channel. Sens. Actuators B: Chem. 113 1, 17 (2006) 281-289
    • (2006) Sens. Actuators B: Chem. , vol.113 , Issue.1-17 , pp. 281-289
    • Kim, J.1    Marafie, A.2    Jia, X.Y.3    Zoval, J.4    Madou, M.J.5
  • 17
    • 33645148050 scopus 로고    scopus 로고
    • Analytical solutions for the rate of DNA hybridization in a microchannel in the presence of pressure-driven and electroosmotic flows
    • Das S., Das T., and Chakraborty S. Analytical solutions for the rate of DNA hybridization in a microchannel in the presence of pressure-driven and electroosmotic flows. Sens. Actuators B: Chem. 114 2, 26 (2006) 957-963
    • (2006) Sens. Actuators B: Chem. , vol.114 , Issue.2-26 , pp. 957-963
    • Das, S.1    Das, T.2    Chakraborty, S.3
  • 18
    • 34248576499 scopus 로고    scopus 로고
    • Transverse electrodes for improved DNA hybridization in microchannels
    • Das S., and Chakraborty S. Transverse electrodes for improved DNA hybridization in microchannels. AIChE J. 53 5 (2007) 1086-1099
    • (2007) AIChE J. , vol.53 , Issue.5 , pp. 1086-1099
    • Das, S.1    Chakraborty, S.2
  • 19
    • 0014413352 scopus 로고
    • Kinetics of renaturation of DNA
    • Wetmur J.G., and Davidson N. Kinetics of renaturation of DNA. J. Mol. Biol. 31 (1968) 349-370
    • (1968) J. Mol. Biol. , vol.31 , pp. 349-370
    • Wetmur, J.G.1    Davidson, N.2
  • 20
    • 0028881098 scopus 로고
    • The biophysics of DNA hybridization with immobilized oligonucleotide probes
    • Chan V., Graves D.J., and McKenzie S.E. The biophysics of DNA hybridization with immobilized oligonucleotide probes. Biophys. J. 69 (1995) 2243-2255
    • (1995) Biophys. J. , vol.69 , pp. 2243-2255
    • Chan, V.1    Graves, D.J.2    McKenzie, S.E.3
  • 21
    • 0028295474 scopus 로고
    • Reduction-of-dimensionality kinetics at reaction-limited cell surface receptors
    • Axelrod D., and Wang M.D. Reduction-of-dimensionality kinetics at reaction-limited cell surface receptors. Biophys. J. 66 (1995) 588-600
    • (1995) Biophys. J. , vol.66 , pp. 588-600
    • Axelrod, D.1    Wang, M.D.2
  • 22
    • 0035253318 scopus 로고    scopus 로고
    • Formation of natural pH gradients in a microfluidic device under flow conditions: model and experimental validation
    • Cabrera C.R., Finlayson B., and Yager P. Formation of natural pH gradients in a microfluidic device under flow conditions: model and experimental validation. Anal. Chem. 73 (2001) 658-666
    • (2001) Anal. Chem. , vol.73 , pp. 658-666
    • Cabrera, C.R.1    Finlayson, B.2    Yager, P.3
  • 25
    • 0141495414 scopus 로고    scopus 로고
    • Generalized numerical formulations for multi-physics microfluidics-type applications
    • Chatterjee A. Generalized numerical formulations for multi-physics microfluidics-type applications. J. Micromech. Microeng. 13 (2003) 758-767
    • (2003) J. Micromech. Microeng. , vol.13 , pp. 758-767
    • Chatterjee, A.1
  • 27
    • 0035881206 scopus 로고    scopus 로고
    • Expression microarray hybridization kinetics depend on length of the immobilized DNA but are independent of immobilization substrate
    • Stillman B.A., and Tonkinson J.L. Expression microarray hybridization kinetics depend on length of the immobilized DNA but are independent of immobilization substrate. Anal. Biochem. 295 (2001) 149-157
    • (2001) Anal. Biochem. , vol.295 , pp. 149-157
    • Stillman, B.A.1    Tonkinson, J.L.2
  • 28
    • 0031234623 scopus 로고    scopus 로고
    • Combined worm like-chain and bead model for dynamic simulations of long linear DNA
    • Jian H.M., Vologodshi A.V., and Schlick T. Combined worm like-chain and bead model for dynamic simulations of long linear DNA. J. Computat. Phys. 136 1 (1997) 168-179
    • (1997) J. Computat. Phys. , vol.136 , Issue.1 , pp. 168-179
    • Jian, H.M.1    Vologodshi, A.V.2    Schlick, T.3
  • 29
    • 33745814377 scopus 로고    scopus 로고
    • Voltammetric currents of the reduction of hydrogen ions from monoprotic acids, in the effect of water dissociation
    • (Special Issue in honor of Petr Zuman on the occasion of his 80th birthday)
    • Pirogov B.Y., and Zelinsky A.G. Voltammetric currents of the reduction of hydrogen ions from monoprotic acids, in the effect of water dissociation. J. Electroanal. Chem. 593 1-2 (2006) 119-124 (Special Issue in honor of Petr Zuman on the occasion of his 80th birthday)
    • (2006) J. Electroanal. Chem. , vol.593 , Issue.1-2 , pp. 119-124
    • Pirogov, B.Y.1    Zelinsky, A.G.2
  • 30
    • 0036646551 scopus 로고    scopus 로고
    • Proton and hydroxide ion mobility in capillary electrophoresis
    • Duso A.B., and Chen D.D.Y. Proton and hydroxide ion mobility in capillary electrophoresis. Anal. Chem. (2002) 2938-2942
    • (2002) Anal. Chem. , pp. 2938-2942
    • Duso, A.B.1    Chen, D.D.Y.2
  • 32
    • 0032532376 scopus 로고    scopus 로고
    • Metmyoglobin/fluoride: effect of distal histidine protonation on the association and dissociation rate constants
    • Merryweather J., Summers F., Vitello L.B., and Erman J.E. Metmyoglobin/fluoride: effect of distal histidine protonation on the association and dissociation rate constants. Archives of Biochemistry and Biophysics 358 2 (1998) 359-368
    • (1998) Archives of Biochemistry and Biophysics , vol.358 , Issue.2 , pp. 359-368
    • Merryweather, J.1    Summers, F.2    Vitello, L.B.3    Erman, J.E.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.